Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:17:07 (3047369): wrapper (7.7.26015): starting
21:17:07 (3047369): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 21:17:07] Arguments: --nthreads 12
[2025-11-21 21:17:07] Threads: 12
[2025-11-21 21:17:07] Checking for CVMFS
[2025-11-21 21:17:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:17:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:17:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:17:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:17:07] 2.11.5.0 2081521 22151 251616 153159 0 504 42260041 45568000 18321 130560 0 141014342 99.795 82497773 17893 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 21:17:07] CVMFS is ok
[2025-11-21 21:17:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:17:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 21:17:07] Further information can be found at the LHC@home message board.
[2025-11-21 21:17:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:17:07] Checking for apptainer binary...
[2025-11-21 21:17:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:17:07] Running /usr/bin/apptainer --version
[2025-11-21 21:17:07] apptainer version 1.4.1-1.el9
[2025-11-21 21:17:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:17:07] wns0041.triumf.lcg
[2025-11-21 21:17:07] apptainer works
[2025-11-21 21:17:08] Set ATHENA_PROC_NUMBER=12
[2025-11-21 21:17:08] Set ATHENA_CORE_NUMBER=12
[2025-11-21 21:17:08] Starting ATLAS job with PandaID=6895329313
[2025-11-21 21:17:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:21:43]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | could have reported an average CPU frequency of 1450 MHz (4 samples)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | ..............................
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . Timing measurements:
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . get job = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . initial setup = 3 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . payload setup = 7 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . stage-in = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . payload execution = 76 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . stage-out = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . log creation = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | ..............................
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895329313/pilotlog.txt
[2025-11-21 21:21:43] 2025-11-22 05:21:10,423 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 21:21:43] - Log from pilotlog.txt -
[2025-11-21 21:21:43] 2025-11-22 05:21:10,404 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895329313/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,405 | INFO     | extracted standard info from prmon json
[2025-11-21 21:21:43] 2025-11-22 05:21:10,405 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:21:43] 2025-11-22 05:21:10,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:21:43] 2025-11-22 05:21:10,406 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 21:21:43] 2025-11-22 05:21:10,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 21:21:43] 2025-11-22 05:21:10,407 | WARNING  | wrong length of table data, x=[1763788673.0, 1763788734.0], y=[1248.0, 730115.0] (must be same and length>=4)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | could have reported an average CPU frequency of 1450 MHz (4 samples)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | ..............................
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . Timing measurements:
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . get job = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . initial setup = 3 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . payload setup = 7 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . stage-in = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . payload execution = 76 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . stage-out = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . log creation = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | ..............................
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895329313/pilotlog.txt
[2025-11-21 21:21:43] 2025-11-22 05:21:10,424 | WARNING  | 
[2025-11-21 21:21:43] [begin log extracts]
[2025-11-21 21:21:43] - Log from pilotlog.txt -
[2025-11-21 21:21:43] 2025-11-22 05:21:10,404 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895329313/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,405 | INFO     | extracted standard info from prmon json
[2025-11-21 21:21:43] 2025-11-22 05:21:10,405 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:21:43] 2025-11-22 05:21:10,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:21:43] 2025-11-22 05:21:10,406 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 21:21:43] 2025-11-22 05:21:10,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 21:21:43] 2025-11-22 05:21:10,407 | WARNING  | wrong length of table data, x=[1763788673.0, 1763788734.0], y=[1248.0, 730115.0] (must be same and length>=4)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | could have reported an average CPU frequency of 1450 MHz (4 samples)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | ..............................
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . Timing measurements:
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . get job = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . initial setup = 3 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . payload setup = 7 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . stage-in = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . payload execution = 76 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . stage-out = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,408 | INFO     | . log creation = 0 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | ..............................
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 21:21:43] 2025-11-22 05:21:10,409 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895329313/pilotlog.txt
[2025-11-21 21:21:43] [end log extracts]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,424 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,425 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 21:21:43] 2025-11-22 05:21:10,570 | INFO     | 
[2025-11-21 21:21:43] 2025-11-22 05:21:10,570 | INFO     | job summary report
[2025-11-21 21:21:43] 2025-11-22 05:21:10,570 | INFO     | --------------------------------------------------
[2025-11-21 21:21:43] 2025-11-22 05:21:10,570 | INFO     | PanDA job id: 6895329313
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | task id: 47556137
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 21:18:58,561 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | pilot state: failed 
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | transexitcode: 65
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | exeerrorcode: 65
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | exitcode: 65
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 21:21:43] 2025-11-22 05:21:10,571 | INFO     | cpuconsumptiontime: 69 s
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | nevents: 0
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | neventsw: 0
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | pid: 3057682
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | pgrp: 3057682
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | corecount: 12
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | event service: False
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | sizes: {0: 2298632, 1: 2298831, 7: 2299093, 11: 2299121, 87: 2324518, 88: 2328808, 89: 2328964, 211: 2329130}
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | --------------------------------------------------
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | 
[2025-11-21 21:21:43] 2025-11-22 05:21:10,572 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 21:21:43] 2025-11-22 05:21:10,593 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:21:43] 2025-11-22 05:21:10,596 | INFO     | job 6895329313 has completed (purged errors)
[2025-11-21 21:21:43] 2025-11-22 05:21:10,596 | INFO     | overall cleanup function is called
[2025-11-21 21:21:43] 2025-11-22 05:21:11,604 | INFO     | --- collectZombieJob: --- 10, [3057682]
[2025-11-21 21:21:43] 2025-11-22 05:21:11,604 | INFO     | zombie collector waiting for pid 3057682
[2025-11-21 21:21:43] 2025-11-22 05:21:11,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:21:43] 2025-11-22 05:21:11,604 | INFO     | collected zombie processes
[2025-11-21 21:21:43] 2025-11-22 05:21:11,605 | INFO     | will attempt to kill all subprocesses of pid=3057682
[2025-11-21 21:21:43] 2025-11-22 05:21:11,915 | INFO     | process IDs to be killed: [3057682] (in reverse order)
[2025-11-21 21:21:43] 2025-11-22 05:21:12,021 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:21:43] 2025-11-22 05:21:12,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:21:43] 2025-11-22 05:21:12,032 | INFO     | did not find any defunct processes belonging to 3057682
[2025-11-21 21:21:43] 2025-11-22 05:21:12,042 | INFO     | did not find any defunct processes belonging to 3057682
[2025-11-21 21:21:43] 2025-11-22 05:21:12,043 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:21:43] 2025-11-22 05:21:12,043 | INFO     | ready for new job
[2025-11-21 21:21:43] 2025-11-22 05:21:12,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:21:43] 2025-11-22 05:21:12,045 | INFO     | ***************************************
[2025-11-21 21:21:43] 2025-11-22 05:21:12,045 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:21:43] 2025-11-22 05:21:12,045 | INFO     | ***************************************
[2025-11-21 21:21:43] 2025-11-22 05:21:12,045 | INFO     | 
[2025-11-21 21:21:43] 2025-11-22 05:21:12,049 | INFO     | architecture information:
[2025-11-21 21:21:43] 2025-11-22 05:21:12,050 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:21:43] 2025-11-22 05:21:12,063 | INFO     | cat /etc/os-release:
[2025-11-21 21:21:43] NAME="CentOS Linux"
[2025-11-21 21:21:43] VERSION="7 (Core)"
[2025-11-21 21:21:43] ID="centos"
[2025-11-21 21:21:43] ID_LIKE="rhel fedora"
[2025-11-21 21:21:43] VERSION_ID="7"
[2025-11-21 21:21:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:21:43] ANSI_COLOR="0;31"
[2025-11-21 21:21:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:21:43] HOME_URL="https://www.centos.org/"
[2025-11-21 21:21:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:21:43] 
[2025-11-21 21:21:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:21:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:21:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:21:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:21:43] 
[2025-11-21 21:21:43] 2025-11-22 05:21:12,064 | INFO     | ***************************************
[2025-11-21 21:21:43] 2025-11-22 05:21:12,567 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 21:21:43] 2025-11-22 05:21:12,583 | INFO     | sufficient remaining disk space (1952100384768 B)
[2025-11-21 21:21:43] 2025-11-22 05:21:12,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:21:43] 2025-11-22 05:21:12,584 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:21:43] 2025-11-22 05:21:12,584 | INFO     | update_server=False
[2025-11-21 21:21:43] 2025-11-22 05:21:12,584 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:21:43] 2025-11-22 05:21:12,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:21:43] 2025-11-22 05:21:13,080 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 21:21:43] 2025-11-22 05:21:13,081 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 21:21:43] 2025-11-22 05:21:13,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:21:43] 2025-11-22 05:21:13,081 | INFO     | will abort loop
[2025-11-21 21:21:43] 2025-11-22 05:21:13,395 | INFO     | all payload control threads have been joined
[2025-11-21 21:21:43] 2025-11-22 05:21:13,476 | INFO     | all data control threads have been joined
[2025-11-21 21:21:43] 2025-11-22 05:21:13,589 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:13,620 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:13,626 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:13,677 | INFO     | all job control threads have been joined
[2025-11-21 21:21:43] 2025-11-22 05:21:13,922 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,086 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,400 | INFO     | [payload] control thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,481 | INFO     | [data] control thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,590 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,682 | INFO     | [job] control thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,686 | INFO     | [job] validate thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,891 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,914 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:14,958 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:15,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:21:43] 2025-11-22 05:21:15,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:21:43] 2025-11-22 05:21:16,540 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:19,264 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:21:43] 2025-11-22 05:21:21,843 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:21:43] 2025-11-22 05:21:22,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140504366995264)>', '<ExcThread(monitor, started 140503437780736)>']
[2025-11-21 21:21:43] 2025-11-22 05:21:27,722 | INFO     | all workflow threads have been joined
[2025-11-21 21:21:43] 2025-11-22 05:21:27,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:21:43] 2025-11-22 05:21:27,723 | INFO     | traces error code: 0
[2025-11-21 21:21:43] 2025-11-22 05:21:27,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:21:43] 2025-11-22 05:21:43,204 | INFO     | PID=3051078 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 21:21:43] 2025-11-22 05:21:43,205 | INFO     | .. there are 23 such processes running
[2025-11-21 21:21:43] 2025-11-22 05:21:43,206 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:21:43] 2025-11-22 05:21:43,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:21:43] 2025-11-22 05:21:43,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:21:43] 2025-11-22 05:21:43,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:21:43] 2025-11-22 05:21:43,206 | INFO     | [monitor] control thread has ended
[2025-11-21 21:21:43] 2025-11-22 05:21:43,386 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:21:43] 2025-11-22 05:21:43,389 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:21:43] 2025-11-22 05:21:43,392 [wrapper] pilotpid: 3051078
[2025-11-21 21:21:43] 2025-11-22 05:21:43,395 [wrapper] Pilot exit status: 0
[2025-11-21 21:21:43] 2025-11-22 05:21:43,406 [wrapper] pandaids: 6895329313
[2025-11-21 21:21:43] 2025-11-22 05:21:43,473 [wrapper] cleanup supervisor_pilot 3051084 3051079
[2025-11-21 21:21:43] 2025-11-22 05:21:43,477 [wrapper] Test setup, not cleaning
[2025-11-21 21:21:43] 2025-11-22 05:21:43,480 [wrapper] apfmon messages muted
[2025-11-21 21:21:43] 2025-11-22 05:21:43,483 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:21:43] 2025-11-22 05:21:43,486 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:21:43]  *** Error codes and diagnostics ***
[2025-11-21 21:21:43]     "exeErrorCode": 65,
[2025-11-21 21:21:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 21:21:43]     "pilotErrorCode": 1305,
[2025-11-21 21:21:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 21:21:43]  *** Listing of results directory ***
[2025-11-21 21:21:43] total 406228
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc    576529 Nov 21 10:54 pilot3.tar.gz
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc      5112 Nov 21 10:55 queuedata.json
[2025-11-21 21:21:43] -rwx------. 1 boinc boinc     36292 Nov 21 10:56 runpilot2-wrapper.sh
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:21:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:17 run_atlas
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:17 job.xml
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc      6595 Nov 21 21:17 init_data.xml
[2025-11-21 21:21:43] -rw-r--r--. 2 boinc boinc 411775701 Nov 21 21:17 EVNT.47483658._000110.pool.root.1
[2025-11-21 21:21:43] -rw-r--r--. 2 boinc boinc     15847 Nov 21 21:17 start_atlas.sh
[2025-11-21 21:21:43] drwxrwx--x. 2 boinc boinc      4096 Nov 21 21:17 shared
[2025-11-21 21:21:43] -rw-r--r--. 2 boinc boinc    590099 Nov 21 21:17 input.tar.gz
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:17 boinc_lockfile
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc      2785 Nov 21 21:17 pandaJob.out
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc    989752 Nov 21 21:17 agis_schedconf.cvmfs.json
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc   1526164 Nov 21 21:17 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:21:43] drwx------. 5 boinc boinc      4096 Nov 21 21:17 pilot3
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc       524 Nov 21 21:18 boinc_task_state.xml
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc       994 Nov 21 21:19 memory_monitor_summary.json
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc     48544 Nov 21 21:19 log.47556137._001096.job.log.tgz.1
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc     10334 Nov 21 21:21 heartbeat.json
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc      8192 Nov 21 21:21 boinc_mmap_file
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc        23 Nov 21 21:21 wrapper_checkpoint.txt
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc       823 Nov 21 21:21 pilotlog.txt
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc        95 Nov 21 21:21 pilot_heartbeat.json
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc     96269 Nov 21 21:21 log.47556137._001096.job.log.1
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc       186 Nov 21 21:21 output.list
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc       620 Nov 21 21:21 runtime_log
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc    163840 Nov 21 21:21 result.tar.gz
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc       646 Nov 21 21:21 VZ6KDmkTlg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmheJKDmWrHZ4m.diag
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc      8636 Nov 21 21:21 runtime_log.err
[2025-11-21 21:21:43] -rw-r--r--. 1 boinc boinc     22437 Nov 21 21:21 stderr.txt
[2025-11-21 21:21:43] No HITS result produced
[2025-11-21 21:21:43]  *** Contents of shared directory: ***
[2025-11-21 21:21:43] total 402888
[2025-11-21 21:21:43] -rw-r--r--. 2 boinc boinc 411775701 Nov 21 21:17 ATLAS.root_0
[2025-11-21 21:21:43] -rw-r--r--. 2 boinc boinc     15847 Nov 21 21:17 start_atlas.sh
[2025-11-21 21:21:43] -rw-r--r--. 2 boinc boinc    590099 Nov 21 21:17 input.tar.gz
[2025-11-21 21:21:43] -rw-------. 1 boinc boinc    163840 Nov 21 21:21 result.tar.gz
21:21:45 (3047369): run_atlas exited; CPU time 67.221118
21:21:45 (3047369): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN