Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:00:30 (46658): wrapper (7.7.26015): starting
16:00:30 (46658): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 16:00:30] Arguments: --nthreads 12
[2025-11-22 16:00:30] Threads: 12
[2025-11-22 16:00:30] Checking for CVMFS
[2025-11-22 16:00:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 16:00:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 16:00:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 16:00:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 16:00:34] 2.13.3.0 5957 1353 105524 153176 0 130 4704633 102400001 1673 130560 29 4769194 99.995 55257 10 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 16:00:34] CVMFS is ok
[2025-11-22 16:00:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 16:00:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 16:00:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 16:00:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 16:00:34] Further information can be found at the LHC@home message board.
[2025-11-22 16:00:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 16:00:34] Checking for apptainer binary...
[2025-11-22 16:00:34] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 16:00:34] apptainer is not installed, using version from CVMFS
[2025-11-22 16:00:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 16:00:35] crocidura-russula
[2025-11-22 16:00:35] apptainer works
[2025-11-22 16:00:35] Set ATHENA_PROC_NUMBER=12
[2025-11-22 16:00:35] Set ATHENA_CORE_NUMBER=12
[2025-11-22 16:00:35] Starting ATLAS job with PandaID=6894289293
[2025-11-22 16:00:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:11:31]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:11:31] 2025-11-22 19:10:21,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:11:31] 2025-11-22 19:10:21,503 | INFO     | time since job start (11354s) is within the limit (172800.0s)
[2025-11-22 19:11:31] 2025-11-22 19:10:21,835 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:11:31] 2025-11-22 19:10:21,835 | INFO     | job 6894289293 has state=finished
[2025-11-22 19:11:31] 2025-11-22 19:10:21,835 | INFO     | preparing for final server update for job 6894289293 in state='finished'
[2025-11-22 19:11:31] 2025-11-22 19:10:21,836 | INFO     | this job has now completed (state=finished)
[2025-11-22 19:11:31] 2025-11-22 19:10:21,836 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 19:11:31] 2025-11-22 19:10:21,836 | INFO     | log transfer has been attempted: DONE
[2025-11-22 19:11:31] 2025-11-22 19:10:21,836 | INFO     | job 6894289293 has finished - writing final server update
[2025-11-22 19:11:31] 2025-11-22 19:10:21,836 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 19:11:31] 2025-11-22 19:10:21,836 | INFO     | executing command: lscpu
[2025-11-22 19:11:31] 2025-11-22 19:10:21,862 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 19:11:31] 2025-11-22 19:10:23,506 | INFO     | time since job start (11356s) is within the limit (172800.0s)
[2025-11-22 19:11:31] 2025-11-22 19:10:23,561 | INFO     | monitor loop #835: job 0:6894289293 is in state 'finished'
[2025-11-22 19:11:31] 2025-11-22 19:10:23,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,099 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 19:11:31] 2025-11-22 19:10:24,103 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4264.590666666668
[2025-11-22 19:11:31] 2025-11-22 19:10:24,107 | INFO     | using path: /virtma/boinc/slots/0/PanDA_Pilot-6894289293/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,108 | INFO     | extracted standard info from prmon json
[2025-11-22 19:11:31] 2025-11-22 19:10:24,108 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:11:31] 2025-11-22 19:10:24,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:11:31] 2025-11-22 19:10:24,110 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:11:31] 2025-11-22 19:10:24,110 | INFO     | sum of square deviations: 1995283922.5
[2025-11-22 19:11:31] 2025-11-22 19:10:24,111 | INFO     | sum of deviations: 617731990218.0001
[2025-11-22 19:11:31] 2025-11-22 19:10:24,111 | INFO     | mean x: 1763832928.5
[2025-11-22 19:11:31] 2025-11-22 19:10:24,111 | INFO     | mean y: 2692699.860215054
[2025-11-22 19:11:31] 2025-11-22 19:10:24,111 | INFO     | intersect: -546072987581.85095
[2025-11-22 19:11:31] 2025-11-22 19:10:24,111 | INFO     | chi2: 22.74975821455729
[2025-11-22 19:11:31] 2025-11-22 19:10:24,111 | INFO     | sum of square deviations: 1838657730.0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | sum of deviations: 650856752569.0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | mean x: 1763832776.0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | mean y: 2724591.955801105
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | intersect: -624367137145.239
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | chi2: 17.801224992961373
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | current chi2=17.801224992961373 (change=21.752025559680064 %)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | right removable region: 180
[2025-11-22 19:11:31] 2025-11-22 19:10:24,112 | INFO     | sum of square deviations: 1838657730.0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | sum of deviations: 557584949192.0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | mean x: 1763833081.0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | mean y: 2751189.497237569
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | intersect: -534891135152.5539
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | chi2: 21.621500183004844
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | current chi2=21.621500183004844 (change=4.959428671336324 %)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | left removable region: 10
[2025-11-22 19:11:31] 2025-11-22 19:10:24,113 | INFO     | sum of square deviations: 1523386702.5
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | sum of deviations: 531465117082.9999
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | mean x: 1763833050.5
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | mean y: 2840003.505882353
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | intersect: -615346983623.3334
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | chi2: 16.527579623107684
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | current memory leak: 348.87 B/s (using 170 data points, chi2=16.53)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | could have reported an average CPU frequency of 4201 MHz (10 samples)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | ..............................
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . Timing measurements:
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . get job = 0 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . initial setup = 28 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . payload setup = 2 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . stage-in = 0 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . payload execution = 11326 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . stage-out = 2 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | . log creation = 0 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,114 | INFO     | ..............................
[2025-11-22 19:11:31] 2025-11-22 19:10:24,169 | INFO     | 
[2025-11-22 19:11:31] 2025-11-22 19:10:24,169 | INFO     | job summary report
[2025-11-22 19:11:31] 2025-11-22 19:10:24,169 | INFO     | --------------------------------------------------
[2025-11-22 19:11:31] 2025-11-22 19:10:24,169 | INFO     | PanDA job id: 6894289293
[2025-11-22 19:11:31] 2025-11-22 19:10:24,169 | INFO     | task id: 47533967
[2025-11-22 19:11:31] 2025-11-22 19:10:24,169 | INFO     | errors: (none)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | pilot state: finished 
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | transexitcode: 0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | exeerrorcode: 0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | exeerrordiag: 
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | exitcode: 0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | exitmsg: OK
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | cpuconsumptiontime: 91934 s
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | nevents: 1000
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | neventsw: 0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | pid: 8915
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | pgrp: 8915
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | corecount: 12
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | event service: False
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | sizes: {0: 2298806, 2: 2299068, 11: 2299096, 11332: 2329375, 11333: 2329374, 11337: 2338422, 11338: 2338606, 11343: 2338852}
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | --------------------------------------------------
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | 
[2025-11-22 19:11:31] 2025-11-22 19:10:24,170 | INFO     | executing command: ls -lF /virtma/boinc/slots/0
[2025-11-22 19:11:31] 2025-11-22 19:10:24,184 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,185 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,186 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:11:31] 2025-11-22 19:10:24,186 | INFO     | job 6894289293 has completed (purged errors)
[2025-11-22 19:11:31] 2025-11-22 19:10:24,186 | INFO     | overall cleanup function is called
[2025-11-22 19:11:31] 2025-11-22 19:10:25,202 | INFO     | --- collectZombieJob: --- 10, [8915]
[2025-11-22 19:11:31] 2025-11-22 19:10:25,203 | INFO     | zombie collector waiting for pid 8915
[2025-11-22 19:11:31] 2025-11-22 19:10:25,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:11:31] 2025-11-22 19:10:25,203 | INFO     | collected zombie processes
[2025-11-22 19:11:31] 2025-11-22 19:10:25,203 | INFO     | will attempt to kill all subprocesses of pid=8915
[2025-11-22 19:11:31] 2025-11-22 19:10:25,326 | INFO     | process IDs to be killed: [8915] (in reverse order)
[2025-11-22 19:11:31] 2025-11-22 19:10:25,373 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:11:31] 2025-11-22 19:10:25,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:11:31] 2025-11-22 19:10:25,376 | INFO     | did not find any defunct processes belonging to 8915
[2025-11-22 19:11:31] 2025-11-22 19:10:25,379 | INFO     | did not find any defunct processes belonging to 8915
[2025-11-22 19:11:31] 2025-11-22 19:10:25,380 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:11:31] 2025-11-22 19:10:25,380 | INFO     | ready for new job
[2025-11-22 19:11:31] 2025-11-22 19:10:25,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:11:31] 2025-11-22 19:10:25,381 | INFO     | ***************************************
[2025-11-22 19:11:31] 2025-11-22 19:10:25,381 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:11:31] 2025-11-22 19:10:25,381 | INFO     | ***************************************
[2025-11-22 19:11:31] 2025-11-22 19:10:25,381 | INFO     | 
[2025-11-22 19:11:31] 2025-11-22 19:10:25,383 | INFO     | architecture information:
[2025-11-22 19:11:31] 2025-11-22 19:10:25,384 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:11:31] 2025-11-22 19:10:25,394 | INFO     | cat /etc/os-release:
[2025-11-22 19:11:31] NAME="CentOS Linux"
[2025-11-22 19:11:31] VERSION="7 (Core)"
[2025-11-22 19:11:31] ID="centos"
[2025-11-22 19:11:31] ID_LIKE="rhel fedora"
[2025-11-22 19:11:31] VERSION_ID="7"
[2025-11-22 19:11:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:11:31] ANSI_COLOR="0;31"
[2025-11-22 19:11:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:11:31] HOME_URL="https://www.centos.org/"
[2025-11-22 19:11:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:11:31] 
[2025-11-22 19:11:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:11:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:11:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:11:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:11:31] 
[2025-11-22 19:11:31] 2025-11-22 19:10:25,394 | INFO     | ***************************************
[2025-11-22 19:11:31] 2025-11-22 19:10:25,897 | INFO     | executing command: df -mP /virtma/boinc/slots/0
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | INFO     | sufficient remaining disk space (963046801408 B)
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | INFO     | update_server=False
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:11:31] 2025-11-22 19:10:25,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:11:31] 2025-11-22 19:10:26,064 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 19:11:31] 2025-11-22 19:10:26,065 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 19:11:31] 2025-11-22 19:10:26,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:11:31] 2025-11-22 19:10:26,065 | INFO     | will abort loop
[2025-11-22 19:11:31] 2025-11-22 19:10:26,134 | INFO     | all payload control threads have been joined
[2025-11-22 19:11:31] 2025-11-22 19:10:26,794 | INFO     | all data control threads have been joined
[2025-11-22 19:11:31] 2025-11-22 19:10:26,914 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:26,914 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,070 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,118 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,139 | INFO     | [payload] control thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,254 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,360 | INFO     | [job] validate thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,438 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,478 | INFO     | all job control threads have been joined
[2025-11-22 19:11:31] 2025-11-22 19:10:27,598 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,726 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,799 | INFO     | [data] control thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,902 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,914 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:27,962 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:28,482 | INFO     | [job] control thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:29,914 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:11:31] 2025-11-22 19:10:56,708 | INFO     | PID=2034 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 19:11:31] 2025-11-22 19:10:56,708 | INFO     | .. there are 3 such processes running
[2025-11-22 19:11:31] 2025-11-22 19:10:56,708 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:11:31] 2025-11-22 19:10:56,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:11:31] 2025-11-22 19:10:56,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:11:31] 2025-11-22 19:11:24,326 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:11:31] 2025-11-22 19:11:26,230 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380561475392)>', '<ExcThread(monitor, started 140379865216768)>']
[2025-11-22 19:11:31] 2025-11-22 19:11:26,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:11:31] 2025-11-22 19:11:26,826 | INFO     | [monitor] control thread has ended
[2025-11-22 19:11:31] 2025-11-22 19:11:31,255 | INFO     | all workflow threads have been joined
[2025-11-22 19:11:31] 2025-11-22 19:11:31,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:11:31] 2025-11-22 19:11:31,256 | INFO     | traces error code: 0
[2025-11-22 19:11:31] 2025-11-22 19:11:31,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:11:31] 2025-11-22 19:11:31,343 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:11:31] 2025-11-22 19:11:31,345 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:11:31] 2025-11-22 19:11:31,347 [wrapper] pilotpid: 2034
[2025-11-22 19:11:31] 2025-11-22 19:11:31,348 [wrapper] Pilot exit status: 0
[2025-11-22 19:11:31] 2025-11-22 19:11:31,355 [wrapper] pandaids: 6894289293
[2025-11-22 19:11:31] 2025-11-22 19:11:31,378 [wrapper] cleanup supervisor_pilot 40900 2035
[2025-11-22 19:11:31] 2025-11-22 19:11:31,380 [wrapper] Test setup, not cleaning
[2025-11-22 19:11:31] 2025-11-22 19:11:31,381 [wrapper] apfmon messages muted
[2025-11-22 19:11:31] 2025-11-22 19:11:31,382 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:11:31] 2025-11-22 19:11:31,384 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:11:31]  *** Error codes and diagnostics ***
[2025-11-22 19:11:31]     "exeErrorCode": 0,
[2025-11-22 19:11:31]     "exeErrorDiag": "",
[2025-11-22 19:11:31]     "pilotErrorCode": 0,
[2025-11-22 19:11:31]     "pilotErrorDiag": "",
[2025-11-22 19:11:31]  *** Listing of results directory ***
[2025-11-22 19:11:31] total 1298748
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc    576529 Nov 21 10:50 pilot3.tar.gz
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc      5112 Nov 21 11:21 queuedata.json
[2025-11-22 19:11:31] -rwx------ 1 boinc boinc     36292 Nov 21 11:22 runpilot2-wrapper.sh
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc       100 Nov 22 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:11:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 16:00 run_atlas
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc       105 Nov 22 16:00 job.xml
[2025-11-22 19:11:31] -rw-r--r-- 2 boinc boinc     15847 Nov 22 16:00 start_atlas.sh
[2025-11-22 19:11:31] drwxrwx--x 2 boinc boinc        68 Nov 22 16:00 shared
[2025-11-22 19:11:31] -rw-r--r-- 2 boinc boinc    590109 Nov 22 16:00 input.tar.gz
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc      8919 Nov 22 16:00 init_data.xml
[2025-11-22 19:11:31] -rw-r--r-- 2 boinc boinc 409416615 Nov 22 16:00 EVNT.47493127._002404.pool.root.1
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc         0 Nov 22 16:00 boinc_setup_complete
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc         0 Nov 22 16:00 boinc_lockfile
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc      2786 Nov 22 16:00 pandaJob.out
[2025-11-22 19:11:31] -rw------- 1 boinc boinc    989768 Nov 22 16:00 agis_schedconf.cvmfs.json
[2025-11-22 19:11:31] drwx------ 5 boinc boinc      4096 Nov 22 16:01 pilot3
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc       532 Nov 22 19:04 boinc_task_state.xml
[2025-11-22 19:11:31] -rw------- 1 boinc boinc 909478669 Nov 22 19:09 HITS.47533967._003760.pool.root.1
[2025-11-22 19:11:31] -rw------- 1 boinc boinc      1037 Nov 22 19:10 memory_monitor_summary.json
[2025-11-22 19:11:31] -rw------- 1 boinc boinc   1526164 Nov 22 19:10 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:11:31] -rw------- 1 boinc boinc   1931307 Nov 22 19:10 log.47533967._003760.job.log.tgz.1
[2025-11-22 19:11:31] -rw------- 1 boinc boinc        95 Nov 22 19:10 pilot_heartbeat.json
[2025-11-22 19:11:31] -rw------- 1 boinc boinc      8634 Nov 22 19:10 heartbeat.json
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc      8192 Nov 22 19:11 boinc_mmap_file
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc        28 Nov 22 19:11 wrapper_checkpoint.txt
[2025-11-22 19:11:31] -rw------- 1 boinc boinc      5006 Nov 22 19:11 pilotlog.txt
[2025-11-22 19:11:31] -rw------- 1 boinc boinc   1623215 Nov 22 19:11 log.47533967._003760.job.log.1
[2025-11-22 19:11:31] -rw------- 1 boinc boinc       353 Nov 22 19:11 output.list
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc       620 Nov 22 19:11 runtime_log
[2025-11-22 19:11:31] -rw------- 1 boinc boinc   3573760 Nov 22 19:11 result.tar.gz
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc      8814 Nov 22 19:11 runtime_log.err
[2025-11-22 19:11:31] -rw------- 1 boinc boinc       661 Nov 22 19:11 NFNLDmrOeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDZHKDm7gPhcn.diag
[2025-11-22 19:11:31] -rw-r--r-- 1 boinc boinc     22031 Nov 22 19:11 stderr.txt
[2025-11-22 19:11:31] HITS file was successfully produced:
[2025-11-22 19:11:31] -rw------- 1 boinc boinc 909478669 Nov 22 19:09 shared/HITS.pool.root.1
[2025-11-22 19:11:31]  *** Contents of shared directory: ***
[2025-11-22 19:11:31] total 1292076
[2025-11-22 19:11:31] -rw-r--r-- 2 boinc boinc     15847 Nov 22 16:00 start_atlas.sh
[2025-11-22 19:11:31] -rw-r--r-- 2 boinc boinc    590109 Nov 22 16:00 input.tar.gz
[2025-11-22 19:11:31] -rw-r--r-- 2 boinc boinc 409416615 Nov 22 16:00 ATLAS.root_0
[2025-11-22 19:11:31] -rw------- 1 boinc boinc 909478669 Nov 22 19:09 HITS.pool.root.1
[2025-11-22 19:11:31] -rw------- 1 boinc boinc   3573760 Nov 22 19:11 result.tar.gz
19:11:32 (46658): run_atlas exited; CPU time 91947.881399
19:11:32 (46658): called boinc_finish(0)

</stderr_txt>
]]>

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