Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:13 (1403890): wrapper (7.7.26015): starting
00:09:13 (1403890): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:09:13] Arguments: --nthreads 8
[2025-11-22 00:09:13] Threads: 8
[2025-11-22 00:09:13] Checking for CVMFS
[2025-11-22 00:09:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:09:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:09:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:09:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:09:16] 2.13.3.0 11379 23851 300272 153160 3 166 32328389 32935936 25815 16776704 0 77967328 99.395 117529549 38913 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:09:16] CVMFS is ok
[2025-11-22 00:09:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:09:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:09:16] Further information can be found at the LHC@home message board.
[2025-11-22 00:09:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:09:16] Checking for apptainer binary...
[2025-11-22 00:09:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:09:16] Running /usr/bin/apptainer --version
[2025-11-22 00:09:16] apptainer version 1.4.4-1.el9
[2025-11-22 00:09:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:09:17] c6-4-5-1.aglt2.org
[2025-11-22 00:09:17] apptainer works
[2025-11-22 00:09:17] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:09:17] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:09:17] Starting ATLAS job with PandaID=6891572118
[2025-11-22 00:09:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:21:31]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:21:51] 2025-11-23 14:20:29,280 | INFO     | time since job start (119400s) is within the limit (172800.0s)
[2025-11-23 09:21:51] 2025-11-23 14:20:30,595 | INFO     | monitor loop #6704: job 0:6891572118 is in state 'finished'
[2025-11-23 09:21:51] 2025-11-23 14:20:30,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:21:51] 2025-11-23 14:20:31,286 | INFO     | time since job start (119402s) is within the limit (172800.0s)
[2025-11-23 09:21:51] 2025-11-23 14:20:33,117 | INFO     | monitor loop #6705: job 0:6891572118 is in state 'finished'
[2025-11-23 09:21:51] 2025-11-23 14:20:33,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:21:51] 2025-11-23 14:20:33,293 | INFO     | time since job start (119404s) is within the limit (172800.0s)
[2025-11-23 09:21:51] 2025-11-23 14:20:35,301 | INFO     | time since job start (119406s) is within the limit (172800.0s)
[2025-11-23 09:21:51] 2025-11-23 14:20:35,624 | INFO     | monitor loop #6706: job 0:6891572118 is in state 'finished'
[2025-11-23 09:21:51] 2025-11-23 14:20:35,625 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:21:51] 2025-11-23 14:20:37,309 | INFO     | time since job start (119408s) is within the limit (172800.0s)
[2025-11-23 09:21:51] 2025-11-23 14:20:38,130 | INFO     | monitor loop #6707: job 0:6891572118 is in state 'finished'
[2025-11-23 09:21:51] 2025-11-23 14:20:38,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:21:51] 2025-11-23 14:20:39,334 | INFO     | time since job start (119410s) is within the limit (172800.0s)
[2025-11-23 09:21:51] 2025-11-23 14:20:40,025 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 09:21:51] 2025-11-23 14:20:40,062 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2927.184984374999
[2025-11-23 09:21:51] 2025-11-23 14:20:40,150 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891572118/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:21:51] 2025-11-23 14:20:40,151 | INFO     | extracted standard info from prmon json
[2025-11-23 09:21:51] 2025-11-23 14:20:40,152 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:21:51] 2025-11-23 14:20:40,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:21:51] 2025-11-23 14:20:40,213 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:21:51] 2025-11-23 14:20:40,220 | INFO     | sum of square deviations: 2313309042815.568
[2025-11-23 09:21:51] 2025-11-23 14:20:40,359 | INFO     | sum of deviations: 9358849301603.797
[2025-11-23 09:21:51] 2025-11-23 14:20:40,359 | INFO     | mean x: 1763847960.68782
[2025-11-23 09:21:51] 2025-11-23 14:20:40,360 | INFO     | mean y: 2951081.7308085975
[2025-11-23 09:21:51] 2025-11-23 14:20:40,360 | INFO     | intersect: -7132968481.75597
[2025-11-23 09:21:51] 2025-11-23 14:20:40,388 | INFO     | chi2: 26.5466282075638
[2025-11-23 09:21:51] 2025-11-23 14:20:40,390 | INFO     | sum of square deviations: 2295597336067.1284
[2025-11-23 09:21:51] 2025-11-23 14:20:40,659 | INFO     | monitor loop #6708: job 0:6891572118 is in state 'finished'
[2025-11-23 09:21:51] 2025-11-23 14:20:40,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:21:51] 2025-11-23 14:20:41,019 | INFO     | sum of deviations: 10028934638645.379
[2025-11-23 09:21:51] 2025-11-23 14:20:41,019 | INFO     | mean x: 1763847808.195998
[2025-11-23 09:21:51] 2025-11-23 14:20:41,019 | INFO     | mean y: 2956850.1795792715
[2025-11-23 09:21:51] 2025-11-23 14:20:41,020 | INFO     | intersect: -7702886898.193847
[2025-11-23 09:21:51] 2025-11-23 14:20:41,023 | INFO     | chi2: 23.24906844552163
[2025-11-23 09:21:51] 2025-11-23 14:20:41,024 | INFO     | current chi2=23.24906844552163 (change=12.421764964872684 %)
[2025-11-23 09:21:51] 2025-11-23 14:20:41,024 | INFO     | right removable region: 1948
[2025-11-23 09:21:51] 2025-11-23 14:20:41,061 | INFO     | sum of square deviations: 2295593655332.521
[2025-11-23 09:21:51] 2025-11-23 14:20:41,377 | INFO     | sum of deviations: 8566335020862.472
[2025-11-23 09:21:51] 2025-11-23 14:20:41,381 | INFO     | mean x: 1763848113.1954849
[2025-11-23 09:21:51] 2025-11-23 14:20:41,381 | INFO     | mean y: 2957903.4869163674
[2025-11-23 09:21:51] 2025-11-23 14:20:41,381 | INFO     | intersect: -6579092812.871247
[2025-11-23 09:21:51] 2025-11-23 14:20:41,383 | INFO     | chi2: 22.580717835545165
[2025-11-23 09:21:51] 2025-11-23 14:20:41,384 | INFO     | current chi2=22.580717835545165 (change=14.939412798528767 %)
[2025-11-23 09:21:51] 2025-11-23 14:20:41,384 | INFO     | left removable region: 10
[2025-11-23 09:21:51] 2025-11-23 14:20:41,390 | INFO     | sum of square deviations: 2256942871362.0615
[2025-11-23 09:21:51] 2025-11-23 14:20:41,410 | INFO     | time since job start (119412s) is within the limit (172800.0s)
[2025-11-23 09:21:51] 2025-11-23 14:20:41,831 | INFO     | sum of deviations: 8662936721537.822
[2025-11-23 09:21:51] 2025-11-23 14:20:41,831 | INFO     | mean x: 1763848082.7136223
[2025-11-23 09:21:51] 2025-11-23 14:20:41,831 | INFO     | mean y: 2970835.9834881322
[2025-11-23 09:21:51] 2025-11-23 14:20:41,832 | INFO     | intersect: -6767295492.349583
[2025-11-23 09:21:51] 2025-11-23 14:20:41,837 | INFO     | chi2: 15.73387482026724
[2025-11-23 09:21:51] 2025-11-23 14:20:41,837 | INFO     | current memory leak: 3.84 B/s (using 1938 data points, chi2=15.73)
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | could have reported an average CPU frequency of 3001 MHz (68 samples)
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | ..............................
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | . Timing measurements:
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | . get job = 0 s
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | . initial setup = 6 s
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | . payload setup = 47 s
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | . stage-in = 0 s
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | . payload execution = 119228 s
[2025-11-23 09:21:51] 2025-11-23 14:20:41,840 | INFO     | . stage-out = 15 s
[2025-11-23 09:21:51] 2025-11-23 14:20:41,841 | INFO     | . log creation = 9 s
[2025-11-23 09:21:51] 2025-11-23 14:20:41,841 | INFO     | ..............................
[2025-11-23 09:21:51] 2025-11-23 14:20:42,309 | INFO     | 
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | job summary report
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | --------------------------------------------------
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | PanDA job id: 6891572118
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | task id: 47493068
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | errors: (none)
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | pilot state: finished 
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | transexitcode: 0
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | exeerrorcode: 0
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | exeerrordiag: 
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | exitcode: 0
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | exitmsg: OK
[2025-11-23 09:21:51] 2025-11-23 14:20:42,310 | INFO     | cpuconsumptiontime: 234676 s
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | nevents: 1000
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | neventsw: 0
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | pid: 1451227
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | pgrp: 1451227
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | corecount: 8
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | event service: False
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 35: 2285029, 36: 2299354, 46: 2299382, 119277: 2378896, 119294: 2387890, 119296: 2387946, 119
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | --------------------------------------------------
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | 
[2025-11-23 09:21:51] 2025-11-23 14:20:42,311 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-23 09:21:51] 2025-11-23 14:20:42,451 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,451 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,451 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,451 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:21:51] 2025-11-23 14:20:42,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,453 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:21:51] 2025-11-23 14:20:42,453 | INFO     | job 6891572118 has completed (purged errors)
[2025-11-23 09:21:51] 2025-11-23 14:20:42,453 | INFO     | overall cleanup function is called
[2025-11-23 09:21:51] 2025-11-23 14:20:43,561 | INFO     | --- collectZombieJob: --- 10, [1451227]
[2025-11-23 09:21:51] 2025-11-23 14:20:43,562 | INFO     | zombie collector waiting for pid 1451227
[2025-11-23 09:21:51] 2025-11-23 14:20:43,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:21:51] 2025-11-23 14:20:43,562 | INFO     | collected zombie processes
[2025-11-23 09:21:51] 2025-11-23 14:20:43,562 | INFO     | will attempt to kill all subprocesses of pid=1451227
[2025-11-23 09:21:51] 2025-11-23 14:20:45,596 | INFO     | process IDs to be killed: [1451227] (in reverse order)
[2025-11-23 09:21:51] 2025-11-23 14:20:45,864 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:21:51] 2025-11-23 14:20:45,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:21:51] 2025-11-23 14:20:45,900 | INFO     | did not find any defunct processes belonging to 1451227
[2025-11-23 09:21:51] 2025-11-23 14:20:45,932 | INFO     | did not find any defunct processes belonging to 1451227
[2025-11-23 09:21:51] 2025-11-23 14:20:45,941 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:21:51] 2025-11-23 14:20:45,941 | INFO     | ready for new job
[2025-11-23 09:21:51] 2025-11-23 14:20:45,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:21:51] 2025-11-23 14:20:45,952 | INFO     | ***************************************
[2025-11-23 09:21:51] 2025-11-23 14:20:45,953 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:21:51] 2025-11-23 14:20:45,953 | INFO     | ***************************************
[2025-11-23 09:21:51] 2025-11-23 14:20:45,953 | INFO     | 
[2025-11-23 09:21:51] 2025-11-23 14:20:45,960 | INFO     | architecture information:
[2025-11-23 09:21:51] 2025-11-23 14:20:45,969 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:21:51] 2025-11-23 14:20:46,022 | INFO     | cat /etc/os-release:
[2025-11-23 09:21:51] NAME="CentOS Linux"
[2025-11-23 09:21:51] VERSION="7 (Core)"
[2025-11-23 09:21:51] ID="centos"
[2025-11-23 09:21:51] ID_LIKE="rhel fedora"
[2025-11-23 09:21:51] VERSION_ID="7"
[2025-11-23 09:21:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:21:51] ANSI_COLOR="0;31"
[2025-11-23 09:21:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:21:51] HOME_URL="https://www.centos.org/"
[2025-11-23 09:21:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:21:51] 
[2025-11-23 09:21:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:21:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:21:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:21:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:21:51] 
[2025-11-23 09:21:51] 2025-11-23 14:20:46,022 | INFO     | ***************************************
[2025-11-23 09:21:51] 2025-11-23 14:20:46,526 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-23 09:21:51] 2025-11-23 14:20:46,643 | INFO     | sufficient remaining disk space (67643637760 B)
[2025-11-23 09:21:51] 2025-11-23 14:20:46,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:21:51] 2025-11-23 14:20:46,643 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:21:51] 2025-11-23 14:20:46,643 | INFO     | update_server=False
[2025-11-23 09:21:51] 2025-11-23 14:20:46,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:21:51] 2025-11-23 14:20:46,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:21:51] 2025-11-23 14:20:46,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:21:51] 2025-11-23 14:20:46,819 | INFO     | aborting loop
[2025-11-23 09:21:51] 2025-11-23 14:20:47,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:21:51] 2025-11-23 14:20:47,371 | INFO     | all job control threads have been joined
[2025-11-23 09:21:51] 2025-11-23 14:20:47,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:21:51] 2025-11-23 14:20:47,649 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:47,689 | INFO     | all data control threads have been joined
[2025-11-23 09:21:51] 2025-11-23 14:20:47,695 | INFO     | all payload control threads have been joined
[2025-11-23 09:21:51] 2025-11-23 14:20:47,825 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:47,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,101 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,347 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,355 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,365 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,379 | INFO     | [job] control thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,543 | INFO     | [job] validate thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,695 | INFO     | [data] control thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,709 | INFO     | [payload] control thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,717 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,718 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,766 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:48,971 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:20:51,462 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:21:51] 2025-11-23 14:21:17,603 | INFO     | PID=1418517 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 09:21:51] 2025-11-23 14:21:17,604 | INFO     | .. there are 41 such processes running
[2025-11-23 09:21:51] 2025-11-23 14:21:17,604 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:21:51] 2025-11-23 14:21:17,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:21:51] 2025-11-23 14:21:17,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:21:51] 2025-11-23 14:21:21,657 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:21:51] 2025-11-23 14:21:22,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315978573632)>', '<ExcThread(monitor, started 140315474245376)>']
[2025-11-23 09:21:51] 2025-11-23 14:21:22,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:21:51] 2025-11-23 14:21:22,646 | INFO     | [monitor] control thread has ended
[2025-11-23 09:21:51] 2025-11-23 14:21:27,234 | INFO     | all workflow threads have been joined
[2025-11-23 09:21:51] 2025-11-23 14:21:27,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:21:51] 2025-11-23 14:21:27,235 | INFO     | traces error code: 0
[2025-11-23 09:21:51] 2025-11-23 14:21:27,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:21:51] 2025-11-23 14:21:29,063 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:21:51] 2025-11-23 14:21:29,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:21:51] 2025-11-23 14:21:29,293 [wrapper] pilotpid: 1418517
[2025-11-23 09:21:51] 2025-11-23 14:21:29,346 [wrapper] Pilot exit status: 0
[2025-11-23 09:21:51] 2025-11-23 14:21:29,443 [wrapper] pandaids: 6891572118
[2025-11-23 09:21:51] 2025-11-23 14:21:29,823 [wrapper] cleanup supervisor_pilot  709538 1418518
[2025-11-23 09:21:51] 2025-11-23 14:21:29,912 [wrapper] Test setup, not cleaning
[2025-11-23 09:21:51] 2025-11-23 14:21:29,954 [wrapper] apfmon messages muted
[2025-11-23 09:21:51] 2025-11-23 14:21:30,008 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:21:51] 2025-11-23 14:21:30,046 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:21:51]  *** Error codes and diagnostics ***
[2025-11-23 09:21:51]     "exeErrorCode": 0,
[2025-11-23 09:21:51]     "exeErrorDiag": "",
[2025-11-23 09:21:51]     "pilotErrorCode": 0,
[2025-11-23 09:21:51]     "pilotErrorDiag": "",
[2025-11-23 09:21:51]  *** Listing of results directory ***
[2025-11-23 09:21:51] total 1333332
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:20 queuedata.json
[2025-11-23 09:21:51] -rwx------. 1 boincer umatlas     36292 Nov 18 11:21 runpilot2-wrapper.sh
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:21:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:09 run_atlas
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:09 job.xml
[2025-11-23 09:21:51] -rw-r--r--. 2 boincer umatlas 409881899 Nov 22 00:09 EVNT.47493065._000329.pool.root.1
[2025-11-23 09:21:51] -rw-r--r--. 2 boincer umatlas     15120 Nov 22 00:09 start_atlas.sh
[2025-11-23 09:21:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:09 shared
[2025-11-23 09:21:51] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 00:09 input.tar.gz
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:09 boinc_lockfile
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas      2773 Nov 22 00:09 pandaJob.out
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas    989752 Nov 22 00:10 agis_schedconf.cvmfs.json
[2025-11-23 09:21:51] drwx------. 5 boincer umatlas      4096 Nov 22 00:10 pilot3
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas       533 Nov 23 08:26 boinc_task_state.xml
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas 917206119 Nov 23 09:18 HITS.47493068._003286.pool.root.1
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas      6877 Nov 23 09:18 init_data.xml
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas      1067 Nov 23 09:19 memory_monitor_summary.json
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas   1526164 Nov 23 09:19 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas   2782314 Nov 23 09:20 log.47493068._003286.job.log.tgz.1
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas        95 Nov 23 09:20 pilot_heartbeat.json
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas      8651 Nov 23 09:20 heartbeat.json
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas      4824 Nov 23 09:21 pilotlog.txt
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas  14375669 Nov 23 09:21 log.47493068._003286.job.log.1
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas       353 Nov 23 09:21 output.list
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas       620 Nov 23 09:21 runtime_log
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas  17182720 Nov 23 09:21 result.tar.gz
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas      8705 Nov 23 09:21 runtime_log.err
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas       666 Nov 23 09:21 HqcLDmgddf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWlFKDmEG7CUo.diag
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas        29 Nov 23 09:21 wrapper_checkpoint.txt
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 09:21 boinc_mmap_file
[2025-11-23 09:21:51] -rw-r--r--. 1 boincer umatlas     21823 Nov 23 09:21 stderr.txt
[2025-11-23 09:21:51] HITS file was successfully produced:
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas 917206119 Nov 23 09:18 shared/HITS.pool.root.1
[2025-11-23 09:21:51]  *** Contents of shared directory: ***
[2025-11-23 09:21:51] total 1313372
[2025-11-23 09:21:51] -rw-r--r--. 2 boincer umatlas 409881899 Nov 22 00:09 ATLAS.root_0
[2025-11-23 09:21:51] -rw-r--r--. 2 boincer umatlas     15120 Nov 22 00:09 start_atlas.sh
[2025-11-23 09:21:51] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 00:09 input.tar.gz
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas 917206119 Nov 23 09:18 HITS.pool.root.1
[2025-11-23 09:21:51] -rw-------. 1 boincer umatlas  17182720 Nov 23 09:21 result.tar.gz
09:21:53 (1403890): run_atlas exited; CPU time 237808.178654
09:21:53 (1403890): called boinc_finish(0)

</stderr_txt>
]]>

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