Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:51 (1457656): wrapper (7.7.26015): starting
00:05:51 (1457656): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:05:51] Arguments: --nthreads 9
[2025-11-22 00:05:51] Threads: 9
[2025-11-22 00:05:51] Checking for CVMFS
[2025-11-22 00:05:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:05:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:05:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:05:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:05:54] 2.13.2.0 5689 26708 264668 153159 0 660 37245442 39288832 10834 16776704 0 45331784 99.588 59165568 31888 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:05:54] CVMFS is ok
[2025-11-22 00:05:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:05:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:05:54] Further information can be found at the LHC@home message board.
[2025-11-22 00:05:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:05:54] Checking for apptainer binary...
[2025-11-22 00:05:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:05:54] Running /usr/bin/apptainer --version
[2025-11-22 00:05:54] apptainer version 1.4.4-1.el9
[2025-11-22 00:05:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:05:54] c-210-11.aglt2.org
[2025-11-22 00:05:54] apptainer works
[2025-11-22 00:05:54] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:05:54] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:05:54] Starting ATLAS job with PandaID=6894288738
[2025-11-22 00:05:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:09:41 (681817): wrapper (7.7.26015): starting
09:09:41 (681817): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 09:09:41] Arguments: --nthreads 8
[2025-11-23 09:09:41] Threads: 8
[2025-11-23 09:09:41] This job has been restarted, cleaning up previous attempt
[2025-11-23 09:09:41] Checking for CVMFS
[2025-11-23 09:09:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:09:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:09:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:09:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:09:42] 2.13.2.0 5689 28692 244660 153210 3 100 28508028 39288833 10311 16776704 0 49273186 99.601 62117811 32055 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 09:09:42] CVMFS is ok
[2025-11-23 09:09:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:09:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:09:42] Further information can be found at the LHC@home message board.
[2025-11-23 09:09:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:09:42] Checking for apptainer binary...
[2025-11-23 09:09:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:09:42] Running /usr/bin/apptainer --version
[2025-11-23 09:09:43] apptainer version 1.4.4-1.el9
[2025-11-23 09:09:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:09:43] c-210-11.aglt2.org
[2025-11-23 09:09:43] apptainer works
[2025-11-23 09:09:43] Set ATHENA_PROC_NUMBER=8
[2025-11-23 09:09:43] Set ATHENA_CORE_NUMBER=8
[2025-11-23 09:09:43] Starting ATLAS job with PandaID=6894288738
[2025-11-23 09:09:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:10:57 (2428111): wrapper (7.7.26015): starting
01:10:57 (2428111): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 01:10:57] Arguments: --nthreads 8
[2025-11-24 01:10:57] Threads: 8
[2025-11-24 01:10:57] This job has been restarted, cleaning up previous attempt
[2025-11-24 01:10:57] Checking for CVMFS
[2025-11-24 01:10:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:10:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:10:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:11:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:11:01] 2.13.2.0 5689 29653 246948 153235 3 181 36431834 39288832 10125 16776704 0 50825208 99.596 64072290 32010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 01:11:01] CVMFS is ok
[2025-11-24 01:11:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:11:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:11:01] Further information can be found at the LHC@home message board.
[2025-11-24 01:11:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:11:01] Checking for apptainer binary...
[2025-11-24 01:11:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:11:01] Running /usr/bin/apptainer --version
[2025-11-24 01:11:01] apptainer version 1.4.4-1.el9
[2025-11-24 01:11:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:11:02] c-210-11.aglt2.org
[2025-11-24 01:11:02] apptainer works
[2025-11-24 01:11:02] Set ATHENA_PROC_NUMBER=8
[2025-11-24 01:11:02] Set ATHENA_CORE_NUMBER=8
[2025-11-24 01:11:03] Starting ATLAS job with PandaID=6894288738
[2025-11-24 01:11:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:04:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:04:09] 2025-11-25 18:03:00,975 | INFO     | time since job start (129007s) is within the limit (172800.0s)
[2025-11-25 13:04:09] 2025-11-25 18:03:02,132 | INFO     | monitor loop #7242: job 0:6894288738 is in state 'finished'
[2025-11-25 13:04:09] 2025-11-25 18:03:02,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:09] 2025-11-25 18:03:02,982 | INFO     | time since job start (129009s) is within the limit (172800.0s)
[2025-11-25 13:04:09] 2025-11-25 18:03:04,649 | INFO     | monitor loop #7243: job 0:6894288738 is in state 'finished'
[2025-11-25 13:04:09] 2025-11-25 18:03:04,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:09] 2025-11-25 18:03:04,989 | INFO     | time since job start (129011s) is within the limit (172800.0s)
[2025-11-25 13:04:09] 2025-11-25 18:03:06,996 | INFO     | time since job start (129013s) is within the limit (172800.0s)
[2025-11-25 13:04:09] 2025-11-25 18:03:07,174 | INFO     | monitor loop #7244: job 0:6894288738 is in state 'finished'
[2025-11-25 13:04:09] 2025-11-25 18:03:07,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:09] 2025-11-25 18:03:09,004 | INFO     | time since job start (129016s) is within the limit (172800.0s)
[2025-11-25 13:04:09] 2025-11-25 18:03:09,708 | INFO     | monitor loop #7245: job 0:6894288738 is in state 'finished'
[2025-11-25 13:04:09] 2025-11-25 18:03:09,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:09] 2025-11-25 18:03:11,011 | INFO     | time since job start (129018s) is within the limit (172800.0s)
[2025-11-25 13:04:09] 2025-11-25 18:03:12,219 | INFO     | monitor loop #7246: job 0:6894288738 is in state 'finished'
[2025-11-25 13:04:09] 2025-11-25 18:03:12,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:04:09] 2025-11-25 18:03:12,258 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 13:04:09] 2025-11-25 18:03:12,266 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.79935
[2025-11-25 13:04:09] 2025-11-25 18:03:12,368 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894288738/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:04:09] 2025-11-25 18:03:12,369 | INFO     | extracted standard info from prmon json
[2025-11-25 13:04:09] 2025-11-25 18:03:12,369 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:04:09] 2025-11-25 18:03:12,369 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:04:09] 2025-11-25 18:03:12,446 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:04:09] 2025-11-25 18:03:12,450 | INFO     | sum of square deviations: 2917129427651.309
[2025-11-25 13:04:09] 2025-11-25 18:03:12,580 | INFO     | sum of deviations: 10559206632213.443
[2025-11-25 13:04:09] 2025-11-25 18:03:12,580 | INFO     | mean x: 1764029386.9322596
[2025-11-25 13:04:09] 2025-11-25 18:03:12,581 | INFO     | mean y: 2957728.226906679
[2025-11-25 13:04:09] 2025-11-25 18:03:12,581 | INFO     | intersect: -6382343734.695028
[2025-11-25 13:04:09] 2025-11-25 18:03:12,584 | INFO     | chi2: 25.660127152097804
[2025-11-25 13:04:09] 2025-11-25 18:03:12,587 | INFO     | sum of square deviations: 2896453553061.3154
[2025-11-25 13:04:09] 2025-11-25 18:03:12,833 | INFO     | sum of deviations: 11264103736513.848
[2025-11-25 13:04:09] 2025-11-25 18:03:12,833 | INFO     | mean x: 1764029234.4415956
[2025-11-25 13:04:09] 2025-11-25 18:03:12,833 | INFO     | mean y: 2962926.421652422
[2025-11-25 13:04:09] 2025-11-25 18:03:12,833 | INFO     | intersect: -6857222444.060828
[2025-11-25 13:04:09] 2025-11-25 18:03:12,839 | INFO     | chi2: 22.658539234758994
[2025-11-25 13:04:09] 2025-11-25 18:03:12,839 | INFO     | current chi2=22.658539234758994 (change=11.697478736357002 %)
[2025-11-25 13:04:09] 2025-11-25 18:03:12,840 | INFO     | right removable region: 2105
[2025-11-25 13:04:09] 2025-11-25 18:03:12,843 | INFO     | sum of square deviations: 2896448617985.2
[2025-11-25 13:04:09] 2025-11-25 18:03:13,160 | INFO     | time since job start (129020s) is within the limit (172800.0s)
[2025-11-25 13:04:09] 2025-11-25 18:03:13,343 | INFO     | sum of deviations: 9660907114692.713
[2025-11-25 13:04:09] 2025-11-25 18:03:13,343 | INFO     | mean x: 1764029539.4411206
[2025-11-25 13:04:09] 2025-11-25 18:03:13,343 | INFO     | mean y: 2964352.22317189
[2025-11-25 13:04:09] 2025-11-25 18:03:13,348 | INFO     | intersect: -5880836044.6813345
[2025-11-25 13:04:09] 2025-11-25 18:03:13,351 | INFO     | chi2: 21.1638608206325
[2025-11-25 13:04:09] 2025-11-25 18:03:13,351 | INFO     | current chi2=21.1638608206325 (change=17.522385235326933 %)
[2025-11-25 13:04:09] 2025-11-25 18:03:13,351 | INFO     | left removable region: 10
[2025-11-25 13:04:09] 2025-11-25 18:03:13,359 | INFO     | sum of square deviations: 2851301489709.705
[2025-11-25 13:04:09] 2025-11-25 18:03:13,542 | INFO     | sum of deviations: 9751134700221.691
[2025-11-25 13:04:09] 2025-11-25 18:03:13,542 | INFO     | mean x: 1764029508.9603817
[2025-11-25 13:04:09] 2025-11-25 18:03:13,543 | INFO     | mean y: 2976130.032458234
[2025-11-25 13:04:09] 2025-11-25 18:03:13,543 | INFO     | intersect: -6029809045.129744
[2025-11-25 13:04:09] 2025-11-25 18:03:13,545 | INFO     | chi2: 14.616955032309372
[2025-11-25 13:04:09] 2025-11-25 18:03:13,546 | INFO     | current memory leak: 3.42 B/s (using 2095 data points, chi2=14.62)
[2025-11-25 13:04:09] 2025-11-25 18:03:13,548 | INFO     | could have reported an average CPU frequency of 2599 MHz (73 samples)
[2025-11-25 13:04:09] 2025-11-25 18:03:13,548 | INFO     | ..............................
[2025-11-25 13:04:09] 2025-11-25 18:03:13,548 | INFO     | . Timing measurements:
[2025-11-25 13:04:09] 2025-11-25 18:03:13,548 | INFO     | . get job = 1 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,548 | INFO     | . initial setup = 5 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,548 | INFO     | . payload setup = 84 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,548 | INFO     | . stage-in = 1 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,549 | INFO     | . payload execution = 128771 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,549 | INFO     | . stage-out = 9 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,549 | INFO     | . log creation = 1 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,549 | INFO     | ..............................
[2025-11-25 13:04:09] 2025-11-25 18:03:13,661 | INFO     | 
[2025-11-25 13:04:09] 2025-11-25 18:03:13,661 | INFO     | job summary report
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | --------------------------------------------------
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | PanDA job id: 6894288738
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | task id: 47533967
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | errors: (none)
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | pilot state: finished 
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | transexitcode: 0
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | exeerrorcode: 0
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | exeerrordiag: 
[2025-11-25 13:04:09] 2025-11-25 18:03:13,662 | INFO     | exitcode: 0
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | exitmsg: OK
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | cpuconsumptiontime: 305791 s
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | nevents: 1000
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | neventsw: 0
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | pid: 2443400
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | pgrp: 2443400
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | corecount: 8
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | event service: False
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | sizes: {0: 2297979, 1: 2298580, 2: 2298664, 4: 2298692, 6: 2298891, 7: 2299075, 19: 2299075, 31: 2299103, 43: 2299131, 55: 2299159, 63: 2299449, 66: 2299757, 12885
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | --------------------------------------------------
[2025-11-25 13:04:09] 2025-11-25 18:03:13,663 | INFO     | 
[2025-11-25 13:04:09] 2025-11-25 18:03:13,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 13:04:09] 2025-11-25 18:03:13,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:04:09] 2025-11-25 18:03:13,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:04:09] 2025-11-25 18:03:13,699 | INFO     | job 6894288738 has completed (purged errors)
[2025-11-25 13:04:09] 2025-11-25 18:03:13,700 | INFO     | overall cleanup function is called
[2025-11-25 13:04:09] 2025-11-25 18:03:14,716 | INFO     | --- collectZombieJob: --- 10, [2443400]
[2025-11-25 13:04:09] 2025-11-25 18:03:14,718 | INFO     | zombie collector waiting for pid 2443400
[2025-11-25 13:04:09] 2025-11-25 18:03:14,718 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:04:09] 2025-11-25 18:03:14,718 | INFO     | collected zombie processes
[2025-11-25 13:04:09] 2025-11-25 18:03:14,718 | INFO     | will attempt to kill all subprocesses of pid=2443400
[2025-11-25 13:04:09] 2025-11-25 18:03:15,152 | INFO     | process IDs to be killed: [2443400] (in reverse order)
[2025-11-25 13:04:09] 2025-11-25 18:03:15,423 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:04:09] 2025-11-25 18:03:15,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:04:09] 2025-11-25 18:03:15,474 | INFO     | did not find any defunct processes belonging to 2443400
[2025-11-25 13:04:09] 2025-11-25 18:03:15,483 | INFO     | did not find any defunct processes belonging to 2443400
[2025-11-25 13:04:09] 2025-11-25 18:03:15,484 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:04:09] 2025-11-25 18:03:15,485 | INFO     | ready for new job
[2025-11-25 13:04:09] 2025-11-25 18:03:15,485 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:04:09] 2025-11-25 18:03:15,491 | INFO     | ***************************************
[2025-11-25 13:04:09] 2025-11-25 18:03:15,491 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:04:09] 2025-11-25 18:03:15,491 | INFO     | ***************************************
[2025-11-25 13:04:09] 2025-11-25 18:03:15,491 | INFO     | 
[2025-11-25 13:04:09] 2025-11-25 18:03:15,493 | INFO     | architecture information:
[2025-11-25 13:04:09] 2025-11-25 18:03:15,494 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:04:09] 2025-11-25 18:03:15,514 | INFO     | cat /etc/os-release:
[2025-11-25 13:04:09] NAME="CentOS Linux"
[2025-11-25 13:04:09] VERSION="7 (Core)"
[2025-11-25 13:04:09] ID="centos"
[2025-11-25 13:04:09] ID_LIKE="rhel fedora"
[2025-11-25 13:04:09] VERSION_ID="7"
[2025-11-25 13:04:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:04:09] ANSI_COLOR="0;31"
[2025-11-25 13:04:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:04:09] HOME_URL="https://www.centos.org/"
[2025-11-25 13:04:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:04:09] 
[2025-11-25 13:04:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:04:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:04:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:04:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:04:09] 
[2025-11-25 13:04:09] 2025-11-25 18:03:15,514 | INFO     | ***************************************
[2025-11-25 13:04:09] 2025-11-25 18:03:16,018 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 13:04:09] 2025-11-25 18:03:16,198 | INFO     | sufficient remaining disk space (50018123776 B)
[2025-11-25 13:04:09] 2025-11-25 18:03:16,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:04:09] 2025-11-25 18:03:16,199 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:04:09] 2025-11-25 18:03:16,199 | INFO     | update_server=False
[2025-11-25 13:04:09] 2025-11-25 18:03:16,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:04:09] 2025-11-25 18:03:16,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:04:09] 2025-11-25 18:03:16,200 | INFO     | aborting loop
[2025-11-25 13:04:09] 2025-11-25 18:03:16,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:04:09] 2025-11-25 18:03:16,798 | INFO     | all data control threads have been joined
[2025-11-25 13:04:09] 2025-11-25 18:03:16,900 | INFO     | all payload control threads have been joined
[2025-11-25 13:04:09] 2025-11-25 18:03:17,206 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,214 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:04:09] 2025-11-25 18:03:17,640 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,698 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,773 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,802 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,804 | INFO     | [data] control thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,841 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:17,892 | INFO     | all job control threads have been joined
[2025-11-25 13:04:09] 2025-11-25 18:03:17,906 | INFO     | [payload] control thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:18,152 | INFO     | [job] validate thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:18,289 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:18,548 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:18,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:04:09] 2025-11-25 18:03:18,897 | INFO     | [job] control thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:19,445 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:19,682 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:20,278 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:04:09] 2025-11-25 18:03:46,723 | INFO     | PID=2432122 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:04:09] 2025-11-25 18:03:46,723 | INFO     | .. there are 15 such processes running
[2025-11-25 13:04:09] 2025-11-25 18:03:46,724 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:04:09] 2025-11-25 18:03:46,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:04:09] 2025-11-25 18:03:46,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:04:09] 2025-11-25 18:03:59,268 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:04:09] 2025-11-25 18:04:01,224 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139969767757632)>', '<ExcThread(monitor, started 139968739530496)>']
[2025-11-25 13:04:09] 2025-11-25 18:04:01,844 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:04:09] 2025-11-25 18:04:01,845 | INFO     | [monitor] control thread has ended
[2025-11-25 13:04:09] 2025-11-25 18:04:06,250 | INFO     | all workflow threads have been joined
[2025-11-25 13:04:09] 2025-11-25 18:04:06,250 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:04:09] 2025-11-25 18:04:06,250 | INFO     | traces error code: 0
[2025-11-25 13:04:09] 2025-11-25 18:04:06,250 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:04:09] 2025-11-25 18:04:07,134 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:04:09] 2025-11-25 18:04:07,179 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:04:09] 2025-11-25 18:04:07,236 [wrapper] pilotpid: 2432122
[2025-11-25 13:04:09] 2025-11-25 18:04:07,255 [wrapper] Pilot exit status: 0
[2025-11-25 13:04:09] 2025-11-25 18:04:07,483 [wrapper] pandaids: 6894288738 6894288738 6894288738
[2025-11-25 13:04:09] 2025-11-25 18:04:07,931 [wrapper] cleanup supervisor_pilot 1820930 2432123
[2025-11-25 13:04:09] 2025-11-25 18:04:07,957 [wrapper] Test setup, not cleaning
[2025-11-25 13:04:09] 2025-11-25 18:04:07,987 [wrapper] apfmon messages muted
[2025-11-25 13:04:09] 2025-11-25 18:04:08,042 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:04:09] 2025-11-25 18:04:08,087 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:04:09]  *** Error codes and diagnostics ***
[2025-11-25 13:04:09]     "exeErrorCode": 0,
[2025-11-25 13:04:09]     "exeErrorDiag": "",
[2025-11-25 13:04:09]     "pilotErrorCode": 0,
[2025-11-25 13:04:09]     "pilotErrorDiag": "",
[2025-11-25 13:04:09]  *** Listing of results directory ***
[2025-11-25 13:04:09] total 1721748
[2025-11-25 13:04:09] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:50 pilot3.tar.gz
[2025-11-25 13:04:09] -rwx------. 1 boincer umatlas     36292 Nov 21 06:12 runpilot2-wrapper.sh
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:12 queuedata.json
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:04:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:05 run_atlas
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:05 job.xml
[2025-11-25 13:04:09] -rw-r--r--. 3 boincer umatlas 410328764 Nov 22 00:05 EVNT.47493127._002393.pool.root.1
[2025-11-25 13:04:09] -rw-r--r--. 3 boincer umatlas 410328764 Nov 22 00:05 ATLAS.root_0
[2025-11-25 13:04:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:05 start_atlas.sh
[2025-11-25 13:04:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:05 shared
[2025-11-25 13:04:09] -rw-r--r--. 2 boincer umatlas    590105 Nov 22 00:05 input.tar.gz
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:05 boinc_lockfile
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 01:11 pandaJob.out
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas        57 Nov 24 01:11 setup.sh.local
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas    989786 Nov 24 01:12 agis_schedconf.cvmfs.json
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas       534 Nov 25 12:39 boinc_task_state.xml
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas      6664 Nov 25 13:00 init_data.xml
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas 901334897 Nov 25 13:01 HITS.47533967._003647.pool.root.1
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas      1075 Nov 25 13:02 memory_monitor_summary.json
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas   1516240 Nov 25 13:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas   2902864 Nov 25 13:02 log.47533967._003647.job.log.tgz.1
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas      8673 Nov 25 13:03 heartbeat.json
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas        97 Nov 25 13:03 pilot_heartbeat.json
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas        30 Nov 25 13:04 wrapper_checkpoint.txt
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 13:04 boinc_mmap_file
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas      4824 Nov 25 13:04 pilotlog.txt
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas  15675056 Nov 25 13:04 log.47533967._003647.job.log.1
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas       353 Nov 25 13:04 output.list
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas       620 Nov 25 13:04 runtime_log
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas  18595840 Nov 25 13:04 result.tar.gz
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas      9429 Nov 25 13:04 runtime_log.err
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas       919 Nov 25 13:04 6oXLDmuEeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIKJKDmGMV8Oo.diag
[2025-11-25 13:04:09] -rw-r--r--. 1 boincer umatlas     26138 Nov 25 13:04 stderr.txt
[2025-11-25 13:04:09] HITS file was successfully produced:
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas 901334897 Nov 25 13:01 shared/HITS.pool.root.1
[2025-11-25 13:04:09]  *** Contents of shared directory: ***
[2025-11-25 13:04:09] total 1299688
[2025-11-25 13:04:09] -rw-r--r--. 3 boincer umatlas 410328764 Nov 22 00:05 ATLAS.root_0
[2025-11-25 13:04:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:05 start_atlas.sh
[2025-11-25 13:04:09] -rw-r--r--. 2 boincer umatlas    590105 Nov 22 00:05 input.tar.gz
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas 901334897 Nov 25 13:01 HITS.pool.root.1
[2025-11-25 13:04:09] -rw-------. 1 boincer umatlas  18595840 Nov 25 13:04 result.tar.gz
13:04:10 (2428111): run_atlas exited; CPU time 308340.608771
13:04:10 (2428111): called boinc_finish(0)

</stderr_txt>
]]>

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