Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:28:32 (19815): wrapper (7.7.26015): starting
05:28:32 (19815): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 05:28:32] Arguments: --nthreads 8
[2025-11-25 05:28:32] Threads: 8
[2025-11-25 05:28:32] Checking for CVMFS
[2025-11-25 05:28:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:28:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:28:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:28:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:28:34] 2.11.2.0 18053 170256 139528 153270 2 84 19916498 25165825 4296 130560 11 56331092 99.908 25872050 2276 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 05:28:34] CVMFS is ok
[2025-11-25 05:28:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:28:34] Checking for apptainer binary...
[2025-11-25 05:28:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:28:34] Running /usr/bin/apptainer --version
[2025-11-25 05:28:35] apptainer version 1.3.2-1.el7
[2025-11-25 05:28:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:28:57] cg-vwn306.simple-grid.lan
[2025-11-25 05:28:57] apptainer works
[2025-11-25 05:28:57] Set ATHENA_PROC_NUMBER=8
[2025-11-25 05:28:57] Set ATHENA_CORE_NUMBER=8
[2025-11-25 05:28:57] Starting ATLAS job with PandaID=6895329104
[2025-11-25 05:28:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:31:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:31:06] 2025-11-26 06:30:17,969 | INFO     | time since job start (93441s) is within the limit (172800.0s)
[2025-11-26 07:31:06] 2025-11-26 06:30:19,344 | INFO     | monitor loop #6282: job 0:6895329104 is in state 'finished'
[2025-11-26 07:31:06] 2025-11-26 06:30:19,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:31:06] 2025-11-26 06:30:19,976 | INFO     | time since job start (93443s) is within the limit (172800.0s)
[2025-11-26 07:31:06] 2025-11-26 06:30:21,850 | INFO     | monitor loop #6283: job 0:6895329104 is in state 'finished'
[2025-11-26 07:31:06] 2025-11-26 06:30:21,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:31:06] 2025-11-26 06:30:21,985 | INFO     | time since job start (93445s) is within the limit (172800.0s)
[2025-11-26 07:31:06] 2025-11-26 06:30:23,992 | INFO     | time since job start (93447s) is within the limit (172800.0s)
[2025-11-26 07:31:06] 2025-11-26 06:30:24,357 | INFO     | monitor loop #6284: job 0:6895329104 is in state 'finished'
[2025-11-26 07:31:06] 2025-11-26 06:30:24,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:31:06] 2025-11-26 06:30:26,003 | INFO     | time since job start (93450s) is within the limit (172800.0s)
[2025-11-26 07:31:06] 2025-11-26 06:30:26,862 | INFO     | monitor loop #6285: job 0:6895329104 is in state 'finished'
[2025-11-26 07:31:06] 2025-11-26 06:30:26,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:31:06] 2025-11-26 06:30:27,134 | INFO     | PID=23581 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 07:31:06] 2025-11-26 06:30:27,134 | INFO     | .. there are 9 such processes running
[2025-11-26 07:31:06] 2025-11-26 06:30:28,137 | INFO     | time since job start (93452s) is within the limit (172800.0s)
[2025-11-26 07:31:06] 2025-11-26 06:30:28,377 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 07:31:06] 2025-11-26 06:30:28,378 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-26 07:31:06] 2025-11-26 06:30:28,380 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895329104/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:31:06] 2025-11-26 06:30:28,381 | INFO     | extracted standard info from prmon json
[2025-11-26 07:31:06] 2025-11-26 06:30:28,381 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:31:06] 2025-11-26 06:30:28,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:31:06] 2025-11-26 06:30:28,433 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:31:06] 2025-11-26 06:30:28,436 | INFO     | sum of square deviations: 1093252409863.2208
[2025-11-26 07:31:06] 2025-11-26 06:30:28,539 | INFO     | sum of deviations: 3532046846421.482
[2025-11-26 07:31:06] 2025-11-26 06:30:28,540 | INFO     | mean x: 1764092105.7936926
[2025-11-26 07:31:06] 2025-11-26 06:30:28,540 | INFO     | mean y: 2844675.1130091986
[2025-11-26 07:31:06] 2025-11-26 06:30:28,540 | INFO     | intersect: -5696530787.36157
[2025-11-26 07:31:06] 2025-11-26 06:30:28,542 | INFO     | chi2: 22.440247321065385
[2025-11-26 07:31:06] 2025-11-26 06:30:28,544 | INFO     | sum of square deviations: 1082513822997.3229
[2025-11-26 07:31:06] 2025-11-26 06:30:28,635 | INFO     | sum of deviations: 4034791518843.658
[2025-11-26 07:31:06] 2025-11-26 06:30:28,635 | INFO     | mean x: 1764091953.2979565
[2025-11-26 07:31:06] 2025-11-26 06:30:28,635 | INFO     | mean y: 2851813.3414634145
[2025-11-26 07:31:06] 2025-11-26 06:30:28,635 | INFO     | intersect: -6572346674.118904
[2025-11-26 07:31:06] 2025-11-26 06:30:28,637 | INFO     | chi2: 19.24564614236443
[2025-11-26 07:31:06] 2025-11-26 06:30:28,637 | INFO     | current chi2=19.24564614236443 (change=14.236033734361214 %)
[2025-11-26 07:31:06] 2025-11-26 06:30:28,637 | INFO     | right removable region: 1516
[2025-11-26 07:31:06] 2025-11-26 06:30:28,647 | INFO     | sum of square deviations: 1082512621907.3218
[2025-11-26 07:31:06] 2025-11-26 06:30:28,719 | INFO     | sum of deviations: 2896069163111.155
[2025-11-26 07:31:06] 2025-11-26 06:30:28,719 | INFO     | mean x: 1764092258.2979565
[2025-11-26 07:31:06] 2025-11-26 06:30:28,719 | INFO     | mean y: 2853705.307185234
[2025-11-26 07:31:06] 2025-11-26 06:30:28,719 | INFO     | intersect: -4716660032.221527
[2025-11-26 07:31:06] 2025-11-26 06:30:28,721 | INFO     | chi2: 17.81382684227587
[2025-11-26 07:31:06] 2025-11-26 06:30:28,721 | INFO     | current chi2=17.81382684227587 (change=20.61661982863507 %)
[2025-11-26 07:31:06] 2025-11-26 06:30:28,721 | INFO     | left removable region: 10
[2025-11-26 07:31:06] 2025-11-26 06:30:28,724 | INFO     | sum of square deviations: 1059134571572.1552
[2025-11-26 07:31:06] 2025-11-26 06:30:28,831 | INFO     | sum of deviations: 2963352955152.133
[2025-11-26 07:31:06] 2025-11-26 06:30:28,831 | INFO     | mean x: 1764092227.807437
[2025-11-26 07:31:06] 2025-11-26 06:30:28,832 | INFO     | mean y: 2870267.666002656
[2025-11-26 07:31:06] 2025-11-26 06:30:28,832 | INFO     | intersect: -4932883938.406514
[2025-11-26 07:31:06] 2025-11-26 06:30:28,842 | INFO     | chi2: 10.579123560628117
[2025-11-26 07:31:06] 2025-11-26 06:30:28,846 | INFO     | current memory leak: 2.80 B/s (using 1506 data points, chi2=10.58)
[2025-11-26 07:31:06] 2025-11-26 06:30:28,848 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-26 07:31:06] 2025-11-26 06:30:28,848 | INFO     | ..............................
[2025-11-26 07:31:06] 2025-11-26 06:30:28,848 | INFO     | . Timing measurements:
[2025-11-26 07:31:06] 2025-11-26 06:30:28,848 | INFO     | . get job = 0 s
[2025-11-26 07:31:06] 2025-11-26 06:30:28,848 | INFO     | . initial setup = 10 s
[2025-11-26 07:31:06] 2025-11-26 06:30:28,848 | INFO     | . payload setup = 166 s
[2025-11-26 07:31:06] 2025-11-26 06:30:28,849 | INFO     | . stage-in = 0 s
[2025-11-26 07:31:06] 2025-11-26 06:30:28,849 | INFO     | . payload execution = 92978 s
[2025-11-26 07:31:06] 2025-11-26 06:30:28,849 | INFO     | . stage-out = 5 s
[2025-11-26 07:31:06] 2025-11-26 06:30:28,849 | INFO     | . log creation = 2 s
[2025-11-26 07:31:06] 2025-11-26 06:30:28,849 | INFO     | ..............................
[2025-11-26 07:31:06] 2025-11-26 06:30:29,182 | INFO     | 
[2025-11-26 07:31:06] 2025-11-26 06:30:29,182 | INFO     | job summary report
[2025-11-26 07:31:06] 2025-11-26 06:30:29,182 | INFO     | --------------------------------------------------
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | PanDA job id: 6895329104
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | task id: 47556137
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | errors: (none)
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | pilot state: finished 
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | transexitcode: 0
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | exeerrorcode: 0
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | exeerrordiag: 
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | exitcode: 0
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | exitmsg: OK
[2025-11-26 07:31:06] 2025-11-26 06:30:29,183 | INFO     | cpuconsumptiontime: 346186 s
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | nevents: 1000
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | neventsw: 0
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | pid: 30168
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | pgrp: 30168
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | corecount: 8
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | event service: False
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | sizes: {0: 2284083, 1: 2284338, 2: 2284338, 12: 2284366, 23: 2284394, 34: 2284422, 44: 2284578, 55: 2284606, 66: 2284634, 77: 2284662, 87: 2284718, 97: 2285288, 98
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | --------------------------------------------------
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | 
[2025-11-26 07:31:06] 2025-11-26 06:30:29,184 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-26 07:31:06] 2025-11-26 06:30:29,494 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,495 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,495 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,495 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,497 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:31:06] 2025-11-26 06:30:29,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,497 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:31:06] 2025-11-26 06:30:29,497 | INFO     | job 6895329104 has completed (purged errors)
[2025-11-26 07:31:06] 2025-11-26 06:30:29,497 | INFO     | overall cleanup function is called
[2025-11-26 07:31:06] 2025-11-26 06:30:30,518 | INFO     | --- collectZombieJob: --- 10, [30168]
[2025-11-26 07:31:06] 2025-11-26 06:30:30,518 | INFO     | zombie collector waiting for pid 30168
[2025-11-26 07:31:06] 2025-11-26 06:30:30,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:31:06] 2025-11-26 06:30:30,519 | INFO     | collected zombie processes
[2025-11-26 07:31:06] 2025-11-26 06:30:30,519 | INFO     | will attempt to kill all subprocesses of pid=30168
[2025-11-26 07:31:06] 2025-11-26 06:30:30,646 | INFO     | process IDs to be killed: [30168] (in reverse order)
[2025-11-26 07:31:06] 2025-11-26 06:30:31,509 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:31:06] 2025-11-26 06:30:31,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:31:06] 2025-11-26 06:30:31,512 | INFO     | did not find any defunct processes belonging to 30168
[2025-11-26 07:31:06] 2025-11-26 06:30:31,515 | INFO     | did not find any defunct processes belonging to 30168
[2025-11-26 07:31:06] 2025-11-26 06:30:31,563 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:31:06] 2025-11-26 06:30:31,564 | INFO     | ready for new job
[2025-11-26 07:31:06] 2025-11-26 06:30:31,564 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:31:06] 2025-11-26 06:30:31,569 | INFO     | ***************************************
[2025-11-26 07:31:06] 2025-11-26 06:30:31,570 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:31:06] 2025-11-26 06:30:31,570 | INFO     | ***************************************
[2025-11-26 07:31:06] 2025-11-26 06:30:31,570 | INFO     | 
[2025-11-26 07:31:06] 2025-11-26 06:30:31,570 | INFO     | pilot is running in a VM
[2025-11-26 07:31:06] 2025-11-26 06:30:31,570 | INFO     | architecture information:
[2025-11-26 07:31:06] 2025-11-26 06:30:31,574 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:31:06] 2025-11-26 06:30:31,754 | INFO     | cat /etc/os-release:
[2025-11-26 07:31:06] NAME="CentOS Linux"
[2025-11-26 07:31:06] VERSION="7 (Core)"
[2025-11-26 07:31:06] ID="centos"
[2025-11-26 07:31:06] ID_LIKE="rhel fedora"
[2025-11-26 07:31:06] VERSION_ID="7"
[2025-11-26 07:31:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:31:06] ANSI_COLOR="0;31"
[2025-11-26 07:31:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:31:06] HOME_URL="https://www.centos.org/"
[2025-11-26 07:31:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:31:06] 
[2025-11-26 07:31:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:31:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:31:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:31:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:31:06] 
[2025-11-26 07:31:06] 2025-11-26 06:30:31,754 | INFO     | ***************************************
[2025-11-26 07:31:06] 2025-11-26 06:30:32,257 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-26 07:31:06] 2025-11-26 06:30:32,491 | INFO     | sufficient remaining disk space (495044263936 B)
[2025-11-26 07:31:06] 2025-11-26 06:30:32,491 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:31:06] 2025-11-26 06:30:32,491 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:31:06] 2025-11-26 06:30:32,492 | INFO     | update_server=False
[2025-11-26 07:31:06] 2025-11-26 06:30:32,492 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:31:06] 2025-11-26 06:30:32,779 | INFO     | all data control threads have been joined
[2025-11-26 07:31:06] 2025-11-26 06:30:32,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:31:06] 2025-11-26 06:30:32,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:31:06] 2025-11-26 06:30:32,892 | INFO     | aborting loop
[2025-11-26 07:31:06] 2025-11-26 06:30:33,497 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:33,580 | INFO     | all payload control threads have been joined
[2025-11-26 07:31:06] 2025-11-26 06:30:33,633 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:33,785 | INFO     | [data] control thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:33,898 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:33,948 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:33,981 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:33,985 | INFO     | all job control threads have been joined
[2025-11-26 07:31:06] 2025-11-26 06:30:34,032 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:34,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:31:06] 2025-11-26 06:30:34,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:34,223 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:34,438 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:31:06] 2025-11-26 06:30:34,487 | INFO     | [job] validate thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:34,489 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:34,587 | INFO     | [payload] control thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:34,831 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:34,991 | INFO     | [job] control thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:35,064 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:38,447 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:31:06] 2025-11-26 06:30:38,753 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:31:06] 2025-11-26 06:30:40,545 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888192976704)>', '<ExcThread(monitor, started 139887613306624)>']
[2025-11-26 07:31:06] 2025-11-26 06:30:45,571 | INFO     | all workflow threads have been joined
[2025-11-26 07:31:06] 2025-11-26 06:30:45,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:31:06] 2025-11-26 06:30:45,572 | INFO     | traces error code: 0
[2025-11-26 07:31:06] 2025-11-26 06:30:45,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:31:06] 2025-11-26 06:31:01,343 | INFO     | PID=23581 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 07:31:06] 2025-11-26 06:31:01,344 | INFO     | .. there are 9 such processes running
[2025-11-26 07:31:06] 2025-11-26 06:31:01,344 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:31:06] 2025-11-26 06:31:01,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:31:06] 2025-11-26 06:31:01,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:31:06] 2025-11-26 06:31:01,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:31:06] 2025-11-26 06:31:01,345 | INFO     | [monitor] control thread has ended
[2025-11-26 07:31:06] 2025-11-26 06:31:01,536 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:31:06] 2025-11-26 06:31:01,603 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:31:06] 2025-11-26 06:31:01,697 [wrapper] pilotpid: 23581
[2025-11-26 07:31:06] 2025-11-26 06:31:01,758 [wrapper] Pilot exit status: 0
[2025-11-26 07:31:06] 2025-11-26 06:31:02,148 [wrapper] pandaids: 6895329104
[2025-11-26 07:31:06] 2025-11-26 06:31:02,842 [wrapper] cleanup supervisor_pilot 10360 23582
[2025-11-26 07:31:06] 2025-11-26 06:31:02,954 [wrapper] Test setup, not cleaning
[2025-11-26 07:31:06] 2025-11-26 06:31:03,014 [wrapper] apfmon messages muted
[2025-11-26 07:31:06] 2025-11-26 06:31:03,138 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:31:06] 2025-11-26 06:31:03,234 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:31:06]  *** Error codes and diagnostics ***
[2025-11-26 07:31:06]     "exeErrorCode": 0,
[2025-11-26 07:31:06]     "exeErrorDiag": "",
[2025-11-26 07:31:06]     "pilotErrorCode": 0,
[2025-11-26 07:31:06]     "pilotErrorDiag": "",
[2025-11-26 07:31:06]  *** Listing of results directory ***
[2025-11-26 07:31:06] total 1344784
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc    576529 Nov 21 19:42 pilot3.tar.gz
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc      5112 Nov 21 19:45 queuedata.json
[2025-11-26 07:31:06] -rwx------. 1 boinc boinc     36292 Nov 21 19:45 runpilot2-wrapper.sh
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc       100 Nov 25 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:31:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 05:28 run_atlas
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc       105 Nov 25 05:28 job.xml
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc      6391 Nov 25 05:28 init_data.xml
[2025-11-26 07:31:06] -rw-r--r--. 2 boinc boinc 411473843 Nov 25 05:28 EVNT.47483658._000107.pool.root.1
[2025-11-26 07:31:06] -rw-r--r--. 2 boinc boinc     15847 Nov 25 05:28 start_atlas.sh
[2025-11-26 07:31:06] drwxrwx--x. 2 boinc boinc        68 Nov 25 05:28 shared
[2025-11-26 07:31:06] -rw-r--r--. 2 boinc boinc    590098 Nov 25 05:28 input.tar.gz
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc         0 Nov 25 05:28 boinc_lockfile
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc      2786 Nov 25 05:28 pandaJob.out
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc    991801 Nov 25 05:32 agis_schedconf.cvmfs.json
[2025-11-26 07:31:06] drwx------. 5 boinc boinc      4096 Nov 25 05:32 pilot3
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc       533 Nov 26 07:02 boinc_task_state.xml
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc 931683248 Nov 26 07:27 HITS.47556137._001063.pool.root.1
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc      1031 Nov 26 07:28 memory_monitor_summary.json
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc   1516240 Nov 26 07:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc   2573534 Nov 26 07:28 log.47556137._001063.job.log.tgz.1
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc      8630 Nov 26 07:30 heartbeat.json
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc      8192 Nov 26 07:30 boinc_mmap_file
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc        29 Nov 26 07:30 wrapper_checkpoint.txt
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc       820 Nov 26 07:31 pilotlog.txt
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc        95 Nov 26 07:31 pilot_heartbeat.json
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc  12426273 Nov 26 07:31 log.47556137._001063.job.log.1
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc       353 Nov 26 07:31 output.list
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc       620 Nov 26 07:31 runtime_log
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc  15022080 Nov 26 07:31 result.tar.gz
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc       662 Nov 26 07:31 VCQNDmxJlg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsdJKDmGJtO4n.diag
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc      8817 Nov 26 07:31 runtime_log.err
[2025-11-26 07:31:06] -rw-r--r--. 1 boinc boinc     21513 Nov 26 07:31 stderr.txt
[2025-11-26 07:31:06] HITS file was successfully produced:
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc 931683248 Nov 26 07:27 shared/HITS.pool.root.1
[2025-11-26 07:31:06]  *** Contents of shared directory: ***
[2025-11-26 07:31:06] total 1326948
[2025-11-26 07:31:06] -rw-r--r--. 2 boinc boinc 411473843 Nov 25 05:28 ATLAS.root_0
[2025-11-26 07:31:06] -rw-r--r--. 2 boinc boinc     15847 Nov 25 05:28 start_atlas.sh
[2025-11-26 07:31:06] -rw-r--r--. 2 boinc boinc    590098 Nov 25 05:28 input.tar.gz
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc 931683248 Nov 26 07:27 HITS.pool.root.1
[2025-11-26 07:31:06] -rw-------. 1 boinc boinc  15022080 Nov 26 07:31 result.tar.gz
07:31:07 (19815): run_atlas exited; CPU time 346766.328092
07:31:07 (19815): called boinc_finish(0)

</stderr_txt>
]]>

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