Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:37 (3953924): wrapper (7.7.26015): starting
00:00:37 (3953924): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 00:00:37] Arguments: --nthreads 12
[2025-11-23 00:00:37] Threads: 12
[2025-11-23 00:00:37] Checking for CVMFS
[2025-11-23 00:00:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:00:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:00:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:00:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:00:39] 2.13.2.0 6051 29639 212508 153197 0 143 33829709 40960000 10858 16776704 0 30669632 99.774 16629100 37656 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:00:39] CVMFS is ok
[2025-11-23 00:00:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:00:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:00:39] Further information can be found at the LHC@home message board.
[2025-11-23 00:00:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:00:39] Checking for apptainer binary...
[2025-11-23 00:00:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:00:39] Running /usr/bin/apptainer --version
[2025-11-23 00:00:39] apptainer version 1.4.4-1.el9
[2025-11-23 00:00:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:00:39] c-210-37-3.aglt2.org
[2025-11-23 00:00:39] apptainer works
[2025-11-23 00:00:39] Set ATHENA_PROC_NUMBER=12
[2025-11-23 00:00:39] Set ATHENA_CORE_NUMBER=12
[2025-11-23 00:00:40] Starting ATLAS job with PandaID=6894287898
[2025-11-23 00:00:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:58:43]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:58:43] 2025-11-24 05:57:53,848 | INFO     | monitor loop #5324: job 0:6894287898 is in state 'finished'
[2025-11-24 00:58:43] 2025-11-24 05:57:53,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:58:43] 2025-11-24 05:57:55,089 | INFO     | time since job start (89767s) is within the limit (172800.0s)
[2025-11-24 00:58:43] 2025-11-24 05:57:56,354 | INFO     | monitor loop #5325: job 0:6894287898 is in state 'finished'
[2025-11-24 00:58:43] 2025-11-24 05:57:56,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:58:43] 2025-11-24 05:57:57,095 | INFO     | time since job start (89769s) is within the limit (172800.0s)
[2025-11-24 00:58:43] 2025-11-24 05:57:58,861 | INFO     | monitor loop #5326: job 0:6894287898 is in state 'finished'
[2025-11-24 00:58:43] 2025-11-24 05:57:58,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:58:43] 2025-11-24 05:57:59,125 | INFO     | time since job start (89771s) is within the limit (172800.0s)
[2025-11-24 00:58:43] 2025-11-24 05:58:01,132 | INFO     | time since job start (89773s) is within the limit (172800.0s)
[2025-11-24 00:58:43] 2025-11-24 05:58:01,366 | INFO     | monitor loop #5327: job 0:6894287898 is in state 'finished'
[2025-11-24 00:58:43] 2025-11-24 05:58:01,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:58:43] 2025-11-24 05:58:03,140 | INFO     | time since job start (89775s) is within the limit (172800.0s)
[2025-11-24 00:58:43] 2025-11-24 05:58:03,874 | INFO     | monitor loop #5328: job 0:6894287898 is in state 'finished'
[2025-11-24 00:58:43] 2025-11-24 05:58:03,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:58:43] 2025-11-24 05:58:05,150 | INFO     | time since job start (89777s) is within the limit (172800.0s)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,059 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 00:58:43] 2025-11-24 05:58:06,063 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2745.8526964285716
[2025-11-24 00:58:43] 2025-11-24 05:58:06,082 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894287898/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,083 | INFO     | extracted standard info from prmon json
[2025-11-24 00:58:43] 2025-11-24 05:58:06,083 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:58:43] 2025-11-24 05:58:06,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:58:43] 2025-11-24 05:58:06,103 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:58:43] 2025-11-24 05:58:06,105 | INFO     | sum of square deviations: 983034374186.1328
[2025-11-24 00:58:43] 2025-11-24 05:58:06,140 | INFO     | sum of deviations: 5675010233435.143
[2025-11-24 00:58:43] 2025-11-24 05:58:06,141 | INFO     | mean x: 1763919062.5275698
[2025-11-24 00:58:43] 2025-11-24 05:58:06,141 | INFO     | mean y: 3499633.2682096665
[2025-11-24 00:58:43] 2025-11-24 05:58:06,141 | INFO     | intersect: -10179520405.154057
[2025-11-24 00:58:43] 2025-11-24 05:58:06,142 | INFO     | chi2: 19.319199931438796
[2025-11-24 00:58:43] 2025-11-24 05:58:06,144 | INFO     | sum of square deviations: 973035015327.4077
[2025-11-24 00:58:43] 2025-11-24 05:58:06,197 | INFO     | sum of deviations: 6319045937463.959
[2025-11-24 00:58:43] 2025-11-24 05:58:06,197 | INFO     | mean x: 1763918910.056011
[2025-11-24 00:58:43] 2025-11-24 05:58:06,198 | INFO     | mean y: 3509452.3907103827
[2025-11-24 00:58:43] 2025-11-24 05:58:06,198 | INFO     | intersect: -11451663739.762892
[2025-11-24 00:58:43] 2025-11-24 05:58:06,203 | INFO     | chi2: 15.652211708917227
[2025-11-24 00:58:43] 2025-11-24 05:58:06,204 | INFO     | current chi2=15.652211708917227 (change=18.981056335330706 %)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,204 | INFO     | right removable region: 1463
[2025-11-24 00:58:43] 2025-11-24 05:58:06,205 | INFO     | sum of square deviations: 973022981398.914
[2025-11-24 00:58:43] 2025-11-24 05:58:06,263 | INFO     | sum of deviations: 4956131635197.026
[2025-11-24 00:58:43] 2025-11-24 05:58:06,263 | INFO     | mean x: 1763919215.090847
[2025-11-24 00:58:43] 2025-11-24 05:58:06,263 | INFO     | mean y: 3510587.4357923497
[2025-11-24 00:58:43] 2025-11-24 05:58:06,263 | INFO     | intersect: -8981082778.771223
[2025-11-24 00:58:43] 2025-11-24 05:58:06,265 | INFO     | chi2: 15.17914320598804
[2025-11-24 00:58:43] 2025-11-24 05:58:06,265 | INFO     | current chi2=15.17914320598804 (change=21.42975247496403 %)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,265 | INFO     | left removable region: 10
[2025-11-24 00:58:43] 2025-11-24 05:58:06,266 | INFO     | sum of square deviations: 951251777463.0118
[2025-11-24 00:58:43] 2025-11-24 05:58:06,304 | INFO     | sum of deviations: 5153214516126.429
[2025-11-24 00:58:43] 2025-11-24 05:58:06,305 | INFO     | mean x: 1763919184.6896076
[2025-11-24 00:58:43] 2025-11-24 05:58:06,305 | INFO     | mean y: 3531173.417756366
[2025-11-24 00:58:43] 2025-11-24 05:58:06,305 | INFO     | intersect: -9552145003.145107
[2025-11-24 00:58:43] 2025-11-24 05:58:06,306 | INFO     | chi2: 8.319159456889635
[2025-11-24 00:58:43] 2025-11-24 05:58:06,307 | INFO     | current memory leak: 5.42 B/s (using 1453 data points, chi2=8.32)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,308 | INFO     | could have reported an average CPU frequency of 2824 MHz (52 samples)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,308 | INFO     | ..............................
[2025-11-24 00:58:43] 2025-11-24 05:58:06,308 | INFO     | . Timing measurements:
[2025-11-24 00:58:43] 2025-11-24 05:58:06,308 | INFO     | . get job = 0 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,308 | INFO     | . initial setup = 4 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,308 | INFO     | . payload setup = 48 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,309 | INFO     | . stage-in = 0 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,309 | INFO     | . payload execution = 89609 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,309 | INFO     | . stage-out = 5 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,309 | INFO     | . log creation = 1 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,309 | INFO     | ..............................
[2025-11-24 00:58:43] 2025-11-24 05:58:06,497 | INFO     | 
[2025-11-24 00:58:43] 2025-11-24 05:58:06,497 | INFO     | job summary report
[2025-11-24 00:58:43] 2025-11-24 05:58:06,497 | INFO     | --------------------------------------------------
[2025-11-24 00:58:43] 2025-11-24 05:58:06,497 | INFO     | PanDA job id: 6894287898
[2025-11-24 00:58:43] 2025-11-24 05:58:06,497 | INFO     | task id: 47533967
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | errors: (none)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | pilot state: finished 
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | transexitcode: 0
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | exeerrorcode: 0
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | exeerrordiag: 
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | exitcode: 0
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | exitmsg: OK
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | cpuconsumptiontime: 246041 s
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | nevents: 1000
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | neventsw: 0
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | pid: 3972347
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | pgrp: 3972347
[2025-11-24 00:58:43] 2025-11-24 05:58:06,498 | INFO     | corecount: 12
[2025-11-24 00:58:43] 2025-11-24 05:58:06,499 | INFO     | event service: False
[2025-11-24 00:58:43] 2025-11-24 05:58:06,499 | INFO     | sizes: {0: 2298579, 1: 2298663, 2: 2298748, 3: 2298862, 14: 2298890, 25: 2298918, 36: 2299074, 40: 2299364, 47: 2299392, 89662: 2365149, 89668: 2374143, 89670: 237
[2025-11-24 00:58:43] 2025-11-24 05:58:06,499 | INFO     | --------------------------------------------------
[2025-11-24 00:58:43] 2025-11-24 05:58:06,499 | INFO     | 
[2025-11-24 00:58:43] 2025-11-24 05:58:06,499 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 00:58:43] 2025-11-24 05:58:06,679 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,680 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,680 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,680 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,680 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,680 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,681 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:58:43] 2025-11-24 05:58:06,686 | INFO     | job 6894287898 has completed (purged errors)
[2025-11-24 00:58:43] 2025-11-24 05:58:06,686 | INFO     | overall cleanup function is called
[2025-11-24 00:58:43] 2025-11-24 05:58:07,736 | INFO     | --- collectZombieJob: --- 10, [3972347]
[2025-11-24 00:58:43] 2025-11-24 05:58:07,736 | INFO     | zombie collector waiting for pid 3972347
[2025-11-24 00:58:43] 2025-11-24 05:58:07,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:58:43] 2025-11-24 05:58:07,736 | INFO     | collected zombie processes
[2025-11-24 00:58:43] 2025-11-24 05:58:07,737 | INFO     | will attempt to kill all subprocesses of pid=3972347
[2025-11-24 00:58:43] 2025-11-24 05:58:08,153 | INFO     | process IDs to be killed: [3972347] (in reverse order)
[2025-11-24 00:58:43] 2025-11-24 05:58:08,283 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:58:43] 2025-11-24 05:58:08,284 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:58:43] 2025-11-24 05:58:08,303 | INFO     | did not find any defunct processes belonging to 3972347
[2025-11-24 00:58:43] 2025-11-24 05:58:08,312 | INFO     | did not find any defunct processes belonging to 3972347
[2025-11-24 00:58:43] 2025-11-24 05:58:08,313 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:58:43] 2025-11-24 05:58:08,314 | INFO     | ready for new job
[2025-11-24 00:58:43] 2025-11-24 05:58:08,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:58:43] 2025-11-24 05:58:08,320 | INFO     | ***************************************
[2025-11-24 00:58:43] 2025-11-24 05:58:08,320 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:58:43] 2025-11-24 05:58:08,320 | INFO     | ***************************************
[2025-11-24 00:58:43] 2025-11-24 05:58:08,320 | INFO     | 
[2025-11-24 00:58:43] 2025-11-24 05:58:08,323 | INFO     | architecture information:
[2025-11-24 00:58:43] 2025-11-24 05:58:08,324 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:58:43] 2025-11-24 05:58:08,360 | INFO     | cat /etc/os-release:
[2025-11-24 00:58:43] NAME="CentOS Linux"
[2025-11-24 00:58:43] VERSION="7 (Core)"
[2025-11-24 00:58:43] ID="centos"
[2025-11-24 00:58:43] ID_LIKE="rhel fedora"
[2025-11-24 00:58:43] VERSION_ID="7"
[2025-11-24 00:58:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:58:43] ANSI_COLOR="0;31"
[2025-11-24 00:58:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:58:43] HOME_URL="https://www.centos.org/"
[2025-11-24 00:58:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:58:43] 
[2025-11-24 00:58:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:58:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:58:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:58:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:58:43] 
[2025-11-24 00:58:43] 2025-11-24 05:58:08,361 | INFO     | ***************************************
[2025-11-24 00:58:43] 2025-11-24 05:58:08,866 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 00:58:43] 2025-11-24 05:58:08,948 | INFO     | sufficient remaining disk space (71079821312 B)
[2025-11-24 00:58:43] 2025-11-24 05:58:08,948 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:58:43] 2025-11-24 05:58:08,948 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:58:43] 2025-11-24 05:58:08,949 | INFO     | update_server=False
[2025-11-24 00:58:43] 2025-11-24 05:58:08,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:58:43] 2025-11-24 05:58:08,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:58:43] 2025-11-24 05:58:09,143 | INFO     | all payload control threads have been joined
[2025-11-24 00:58:43] 2025-11-24 05:58:09,198 | INFO     | all data control threads have been joined
[2025-11-24 00:58:43] 2025-11-24 05:58:09,635 | INFO     | all job control threads have been joined
[2025-11-24 00:58:43] 2025-11-24 05:58:09,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:58:43] 2025-11-24 05:58:09,932 | INFO     | aborting loop
[2025-11-24 00:58:43] 2025-11-24 05:58:09,954 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,042 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,137 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,150 | INFO     | [payload] control thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,205 | INFO     | [data] control thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,331 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,645 | INFO     | [job] control thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,704 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:58:43] 2025-11-24 05:58:10,857 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,939 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:10,956 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:11,120 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:11,333 | INFO     | [job] validate thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:11,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:58:43] 2025-11-24 05:58:12,426 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:14,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:19,201 | INFO     | job.realtimelogging is not enabled
[2025-11-24 00:58:43] 2025-11-24 05:58:20,206 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:58:43] 2025-11-24 05:58:35,603 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:58:43] 2025-11-24 05:58:36,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979372848960)>', '<ExcThread(monitor, started 139978336098048)>']
[2025-11-24 00:58:43] 2025-11-24 05:58:38,866 | INFO     | PID=3965576 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 00:58:43] 2025-11-24 05:58:38,867 | INFO     | .. there are 11 such processes running
[2025-11-24 00:58:43] 2025-11-24 05:58:38,867 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:58:43] 2025-11-24 05:58:38,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:58:43] 2025-11-24 05:58:38,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:58:43] 2025-11-24 05:58:38,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:58:43] 2025-11-24 05:58:38,868 | INFO     | [monitor] control thread has ended
[2025-11-24 00:58:43] 2025-11-24 05:58:41,569 | INFO     | all workflow threads have been joined
[2025-11-24 00:58:43] 2025-11-24 05:58:41,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:58:43] 2025-11-24 05:58:41,569 | INFO     | traces error code: 0
[2025-11-24 00:58:43] 2025-11-24 05:58:41,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:58:43] 2025-11-24 05:58:42,104 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:58:43] 2025-11-24 05:58:42,129 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:58:43] 2025-11-24 05:58:42,146 [wrapper] pilotpid: 3965576
[2025-11-24 00:58:43] 2025-11-24 05:58:42,164 [wrapper] Pilot exit status: 0
[2025-11-24 00:58:43] 2025-11-24 05:58:42,273 [wrapper] pandaids: 6894287898
[2025-11-24 00:58:43] 2025-11-24 05:58:42,418 [wrapper] cleanup supervisor_pilot 1835650 3965577
[2025-11-24 00:58:43] 2025-11-24 05:58:42,437 [wrapper] Test setup, not cleaning
[2025-11-24 00:58:43] 2025-11-24 05:58:42,460 [wrapper] apfmon messages muted
[2025-11-24 00:58:43] 2025-11-24 05:58:42,469 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:58:43] 2025-11-24 05:58:42,472 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:58:43]  *** Error codes and diagnostics ***
[2025-11-24 00:58:43]     "exeErrorCode": 0,
[2025-11-24 00:58:43]     "exeErrorDiag": "",
[2025-11-24 00:58:43]     "pilotErrorCode": 0,
[2025-11-24 00:58:43]     "pilotErrorDiag": "",
[2025-11-24 00:58:43]  *** Listing of results directory ***
[2025-11-24 00:58:43] total 1341228
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:50 pilot3.tar.gz
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:06 queuedata.json
[2025-11-24 00:58:43] -rwx------. 1 boincer umatlas     36292 Nov 21 06:07 runpilot2-wrapper.sh
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:58:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:00 run_atlas
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:00 job.xml
[2025-11-24 00:58:43] -rw-r--r--. 2 boincer umatlas 410082827 Nov 23 00:00 EVNT.47493127._002389.pool.root.1
[2025-11-24 00:58:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 00:58:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:00 shared
[2025-11-24 00:58:43] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 00:00 input.tar.gz
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:00 boinc_lockfile
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:00 pandaJob.out
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas        57 Nov 23 00:00 setup.sh.local
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas    989784 Nov 23 00:01 agis_schedconf.cvmfs.json
[2025-11-24 00:58:43] drwx------. 5 boincer umatlas      4096 Nov 23 00:01 pilot3
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas       533 Nov 24 00:35 boinc_task_state.xml
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas      6844 Nov 24 00:55 init_data.xml
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas 931058198 Nov 24 00:56 HITS.47533967._003607.pool.root.1
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas      1058 Nov 24 00:57 memory_monitor_summary.json
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas   1526164 Nov 24 00:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas   2917008 Nov 24 00:57 log.47533967._003607.job.log.tgz.1
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas        95 Nov 24 00:57 pilot_heartbeat.json
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas      8626 Nov 24 00:58 heartbeat.json
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 00:58 boinc_mmap_file
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas        29 Nov 24 00:58 wrapper_checkpoint.txt
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas      4896 Nov 24 00:58 pilotlog.txt
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas  11260817 Nov 24 00:58 log.47533967._003607.job.log.1
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas       353 Nov 24 00:58 output.list
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas       620 Nov 24 00:58 runtime_log
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas  14192640 Nov 24 00:58 result.tar.gz
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas       662 Nov 24 00:58 uwbLDmw9dg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmJJKDmD7AcKo.diag
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas      9355 Nov 24 00:58 runtime_log.err
[2025-11-24 00:58:43] -rw-r--r--. 1 boincer umatlas     21793 Nov 24 00:58 stderr.txt
[2025-11-24 00:58:43] HITS file was successfully produced:
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas 931058198 Nov 24 00:56 shared/HITS.pool.root.1
[2025-11-24 00:58:43]  *** Contents of shared directory: ***
[2025-11-24 00:58:43] total 1324172
[2025-11-24 00:58:43] -rw-r--r--. 2 boincer umatlas 410082827 Nov 23 00:00 ATLAS.root_0
[2025-11-24 00:58:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 00:58:43] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 00:00 input.tar.gz
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas 931058198 Nov 24 00:56 HITS.pool.root.1
[2025-11-24 00:58:43] -rw-------. 1 boincer umatlas  14192640 Nov 24 00:58 result.tar.gz
00:58:44 (3953924): run_atlas exited; CPU time 246812.029601
00:58:44 (3953924): called boinc_finish(0)

</stderr_txt>
]]>

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