Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:39 (1623116): wrapper (7.7.26015): starting
00:00:39 (1623116): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 00:00:39] Arguments: --nthreads 12
[2025-11-23 00:00:39] Threads: 12
[2025-11-23 00:00:39] Checking for CVMFS
[2025-11-23 00:00:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:00:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:00:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:00:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:00:42] 2.13.2.0 8058 31071 238068 153197 2 371 28086277 40960000 11351 16776704 0 29729807 99.723 21128476 35646 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:00:42] CVMFS is ok
[2025-11-23 00:00:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:00:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:00:42] Further information can be found at the LHC@home message board.
[2025-11-23 00:00:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:00:42] Checking for apptainer binary...
[2025-11-23 00:00:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:00:42] Running /usr/bin/apptainer --version
[2025-11-23 00:00:42] apptainer version 1.4.4-1.el9
[2025-11-23 00:00:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:00:42] c-210-33-3.aglt2.org
[2025-11-23 00:00:42] apptainer works
[2025-11-23 00:00:42] Set ATHENA_PROC_NUMBER=12
[2025-11-23 00:00:42] Set ATHENA_CORE_NUMBER=12
[2025-11-23 00:00:42] Starting ATLAS job with PandaID=6895329097
[2025-11-23 00:00:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 15:36:45]  *** The last 200 lines of the pilot log: ***
[2025-11-24 15:36:45] 2025-11-24 09:34:02,830 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 15:36:45] 2025-11-24 09:34:02,847 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3004.7826071428576
[2025-11-24 15:36:45] 2025-11-24 09:34:02,869 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895329097/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 15:36:45] 2025-11-24 09:34:02,869 | INFO     | extracted standard info from prmon json
[2025-11-24 15:36:45] 2025-11-24 09:34:02,869 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 15:36:45] 2025-11-24 09:34:02,870 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 15:36:45] 2025-11-24 09:34:02,921 | INFO     | fitting pss+swap vs Time
[2025-11-24 15:36:45] 2025-11-24 09:34:02,933 | INFO     | sum of square deviations: 1477787975642.8655
[2025-11-24 15:36:45] 2025-11-24 09:34:03,084 | INFO     | sum of deviations: 8580713691542.443
[2025-11-24 15:36:45] 2025-11-24 09:34:03,084 | INFO     | mean x: 1763925449.7944148
[2025-11-24 15:36:45] 2025-11-24 09:34:03,084 | INFO     | mean y: 3554496.02436126
[2025-11-24 15:36:45] 2025-11-24 09:34:03,084 | INFO     | intersect: -10238604397.79582
[2025-11-24 15:36:45] 2025-11-24 09:34:03,086 | INFO     | chi2: 12.967982855449211
[2025-11-24 15:36:45] 2025-11-24 09:34:03,108 | INFO     | sum of square deviations: 1464658517792.7554
[2025-11-24 15:36:45] 2025-11-24 09:34:03,320 | INFO     | sum of deviations: 9304458195247.418
[2025-11-24 15:36:45] 2025-11-24 09:34:03,321 | INFO     | mean x: 1763925297.329559
[2025-11-24 15:36:45] 2025-11-24 09:34:03,321 | INFO     | mean y: 3562899.646603099
[2025-11-24 15:36:45] 2025-11-24 09:34:03,321 | INFO     | intersect: -11202031434.571138
[2025-11-24 15:36:45] 2025-11-24 09:34:03,332 | INFO     | chi2: 9.50427123764771
[2025-11-24 15:36:45] 2025-11-24 09:34:03,332 | INFO     | current chi2=9.50427123764771 (change=26.70971774415966 %)
[2025-11-24 15:36:45] 2025-11-24 09:34:03,361 | INFO     | sum of square deviations: 1451607005700.1978
[2025-11-24 15:36:45] 2025-11-24 09:34:04,268 | INFO     | sum of deviations: 10131721144013.902
[2025-11-24 15:36:45] 2025-11-24 09:34:04,269 | INFO     | mean x: 1763925144.8643155
[2025-11-24 15:36:45] 2025-11-24 09:34:04,269 | INFO     | mean y: 3572563.9246861925
[2025-11-24 15:36:45] 2025-11-24 09:34:04,269 | INFO     | intersect: -12308022527.929405
[2025-11-24 15:36:45] 2025-11-24 09:34:04,271 | INFO     | chi2: 5.207205856135041
[2025-11-24 15:36:45] 2025-11-24 09:34:04,271 | INFO     | current chi2=5.207205856135041 (change=45.21193970655435 %)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,277 | INFO     | sum of square deviations: 1438632186257.7932
[2025-11-24 15:36:45] 2025-11-24 09:34:04,415 | INFO     | sum of deviations: 10512465928261.447
[2025-11-24 15:36:45] 2025-11-24 09:34:04,415 | INFO     | mean x: 1763924992.392686
[2025-11-24 15:36:45] 2025-11-24 09:34:04,416 | INFO     | mean y: 3577037.510791367
[2025-11-24 15:36:45] 2025-11-24 09:34:04,416 | INFO     | intersect: -12885889470.792482
[2025-11-24 15:36:45] 2025-11-24 09:34:04,422 | INFO     | chi2: 4.071429782856032
[2025-11-24 15:36:45] 2025-11-24 09:34:04,422 | INFO     | current chi2=4.071429782856032 (change=21.811622291460928 %)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,422 | INFO     | right removable region: 1667
[2025-11-24 15:36:45] 2025-11-24 09:34:04,424 | INFO     | sum of square deviations: 1464646716611.7256
[2025-11-24 15:36:45] 2025-11-24 09:34:04,469 | INFO     | PID=1632121 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:36:45] 2025-11-24 09:34:04,469 | INFO     | .. there are 12 such processes running
[2025-11-24 15:36:45] 2025-11-24 09:34:04,532 | INFO     | sum of deviations: 7939822083494.497
[2025-11-24 15:36:45] 2025-11-24 09:34:04,533 | INFO     | mean x: 1763925602.3277712
[2025-11-24 15:36:45] 2025-11-24 09:34:04,533 | INFO     | mean y: 3561930.586412396
[2025-11-24 15:36:45] 2025-11-24 09:34:04,533 | INFO     | intersect: -9558645318.546505
[2025-11-24 15:36:45] 2025-11-24 09:34:04,540 | INFO     | chi2: 10.360737420444842
[2025-11-24 15:36:45] 2025-11-24 09:34:04,540 | INFO     | current chi2=10.360737420444842 (change=20.105250477785695 %)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,540 | INFO     | left removable region: 10
[2025-11-24 15:36:45] 2025-11-24 09:34:04,542 | INFO     | sum of square deviations: 1410345829883.0178
[2025-11-24 15:36:45] 2025-11-24 09:34:04,634 | INFO     | sum of deviations: 9702162351816.451
[2025-11-24 15:36:45] 2025-11-24 09:34:04,634 | INFO     | mean x: 1763925266.926373
[2025-11-24 15:36:45] 2025-11-24 09:34:04,634 | INFO     | mean y: 3588141.0036210017
[2025-11-24 15:36:45] 2025-11-24 09:34:04,634 | INFO     | intersect: -12130945782.218859
[2025-11-24 15:36:45] 2025-11-24 09:34:04,636 | INFO     | chi2: 1.1005075720462192
[2025-11-24 15:36:45] 2025-11-24 09:34:04,636 | INFO     | current memory leak: 6.88 B/s (using 1657 data points, chi2=1.10)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,642 | INFO     | could have reported an average CPU frequency of 2811 MHz (59 samples)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,642 | INFO     | ..............................
[2025-11-24 15:36:45] 2025-11-24 09:34:04,642 | INFO     | . Timing measurements:
[2025-11-24 15:36:45] 2025-11-24 09:34:04,642 | INFO     | . get job = 0 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,642 | INFO     | . initial setup = 3 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,642 | INFO     | . payload setup = 10 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,643 | INFO     | . stage-in = 0 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,643 | INFO     | . payload execution = 102663 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,643 | INFO     | . stage-out = 10 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,643 | INFO     | . log creation = 4 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,643 | INFO     | ..............................
[2025-11-24 15:36:45] 2025-11-24 09:34:04,812 | INFO     | 
[2025-11-24 15:36:45] 2025-11-24 09:34:04,812 | INFO     | job summary report
[2025-11-24 15:36:45] 2025-11-24 09:34:04,812 | INFO     | --------------------------------------------------
[2025-11-24 15:36:45] 2025-11-24 09:34:04,812 | INFO     | PanDA job id: 6895329097
[2025-11-24 15:36:45] 2025-11-24 09:34:04,812 | INFO     | task id: 47556137
[2025-11-24 15:36:45] 2025-11-24 09:34:04,812 | INFO     | errors: (none)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | pilot state: finished 
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | transexitcode: 0
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | exeerrorcode: 0
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | exeerrordiag: 
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | exitcode: 0
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | exitmsg: OK
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | cpuconsumptiontime: 250723 s
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | nevents: 1000
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | neventsw: 0
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | pid: 1648667
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | pgrp: 1648667
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | corecount: 12
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | event service: False
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 17: 2299125, 23: 2299153, 102678: 2370374, 102689: 2379368, 102693: 2379424, 102728: 2379670}
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | --------------------------------------------------
[2025-11-24 15:36:45] 2025-11-24 09:34:04,813 | INFO     | 
[2025-11-24 15:36:45] 2025-11-24 09:34:04,814 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,900 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 15:36:45] 2025-11-24 09:34:04,902 | INFO     | job 6895329097 has completed (purged errors)
[2025-11-24 15:36:45] 2025-11-24 09:34:04,902 | INFO     | overall cleanup function is called
[2025-11-24 15:36:45] 2025-11-24 09:34:05,940 | INFO     | --- collectZombieJob: --- 10, [1648667]
[2025-11-24 15:36:45] 2025-11-24 09:34:05,941 | INFO     | zombie collector waiting for pid 1648667
[2025-11-24 15:36:45] 2025-11-24 09:34:05,941 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 15:36:45] 2025-11-24 09:34:05,941 | INFO     | collected zombie processes
[2025-11-24 15:36:45] 2025-11-24 09:34:05,941 | INFO     | will attempt to kill all subprocesses of pid=1648667
[2025-11-24 15:36:45] 2025-11-24 09:34:07,007 | INFO     | process IDs to be killed: [1648667] (in reverse order)
[2025-11-24 15:36:45] 2025-11-24 09:34:07,153 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 15:36:45] 2025-11-24 09:34:07,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 15:36:45] 2025-11-24 09:34:07,169 | INFO     | did not find any defunct processes belonging to 1648667
[2025-11-24 15:36:45] 2025-11-24 09:34:07,185 | INFO     | did not find any defunct processes belonging to 1648667
[2025-11-24 15:36:45] 2025-11-24 09:34:07,190 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 15:36:45] 2025-11-24 09:34:07,190 | INFO     | ready for new job
[2025-11-24 15:36:45] 2025-11-24 09:34:07,191 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 15:36:45] 2025-11-24 09:34:07,202 | INFO     | ***************************************
[2025-11-24 15:36:45] 2025-11-24 09:34:07,202 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 15:36:45] 2025-11-24 09:34:07,202 | INFO     | ***************************************
[2025-11-24 15:36:45] 2025-11-24 09:34:07,202 | INFO     | 
[2025-11-24 15:36:45] 2025-11-24 09:34:07,205 | INFO     | architecture information:
[2025-11-24 15:36:45] 2025-11-24 09:34:07,211 | INFO     | executing command: cat /etc/os-release
[2025-11-24 15:36:45] 2025-11-24 09:34:07,266 | INFO     | cat /etc/os-release:
[2025-11-24 15:36:45] NAME="CentOS Linux"
[2025-11-24 15:36:45] VERSION="7 (Core)"
[2025-11-24 15:36:45] ID="centos"
[2025-11-24 15:36:45] ID_LIKE="rhel fedora"
[2025-11-24 15:36:45] VERSION_ID="7"
[2025-11-24 15:36:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 15:36:45] ANSI_COLOR="0;31"
[2025-11-24 15:36:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 15:36:45] HOME_URL="https://www.centos.org/"
[2025-11-24 15:36:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 15:36:45] 
[2025-11-24 15:36:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 15:36:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 15:36:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 15:36:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 15:36:45] 
[2025-11-24 15:36:45] 2025-11-24 09:34:07,266 | INFO     | ***************************************
[2025-11-24 15:36:45] 2025-11-24 09:34:07,770 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 15:36:45] 2025-11-24 09:34:07,819 | INFO     | sufficient remaining disk space (68135419904 B)
[2025-11-24 15:36:45] 2025-11-24 09:34:07,819 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 15:36:45] 2025-11-24 09:34:07,819 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 15:36:45] 2025-11-24 09:34:07,820 | INFO     | update_server=False
[2025-11-24 15:36:45] 2025-11-24 09:34:07,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 15:36:45] 2025-11-24 09:34:07,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 15:36:45] 2025-11-24 09:34:07,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 15:36:45] 2025-11-24 09:34:08,001 | INFO     | all payload control threads have been joined
[2025-11-24 15:36:45] 2025-11-24 09:34:08,051 | INFO     | all data control threads have been joined
[2025-11-24 15:36:45] 2025-11-24 09:34:08,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:36:45] 2025-11-24 09:34:08,505 | INFO     | aborting loop
[2025-11-24 15:36:45] 2025-11-24 09:34:08,564 | INFO     | all job control threads have been joined
[2025-11-24 15:36:45] 2025-11-24 09:34:08,824 | INFO     | [job] retrieve thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:08,867 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,007 | INFO     | [payload] control thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,065 | INFO     | [data] control thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,106 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,277 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,510 | INFO     | [job] job monitor thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,596 | INFO     | [job] control thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,759 | INFO     | [job] validate thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,767 | INFO     | [data] copytool_in thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,787 | INFO     | [payload] validate_post thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,826 | INFO     | [data] copytool_out thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:09,835 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:36:45] 2025-11-24 09:34:10,145 | INFO     | [payload] failed_post thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:10,841 | INFO     | [job] queue monitor thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:11,828 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 15:36:45] 2025-11-24 09:34:29,990 | INFO     | [monitor] cgroup control has ended
[2025-11-24 15:36:45] 2025-11-24 09:34:30,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140464814208832)>', '<ExcThread(monitor, started 140464321705728)>']
[2025-11-24 15:36:45] 2025-11-24 09:34:35,424 | INFO     | all workflow threads have been joined
[2025-11-24 15:36:45] 2025-11-24 09:34:35,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 15:36:45] 2025-11-24 09:34:35,425 | INFO     | traces error code: 0
[2025-11-24 15:36:45] 2025-11-24 09:34:35,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 15:36:45] 2025-11-24 09:34:37,067 | INFO     | PID=1632121 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:36:45] 2025-11-24 09:34:37,067 | INFO     | .. there are 12 such processes running
[2025-11-24 15:36:45] 2025-11-24 09:34:37,068 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 15:36:45] 2025-11-24 09:34:37,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 15:36:45] 2025-11-24 09:34:37,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 15:36:45] 2025-11-24 09:34:37,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 15:36:45] 2025-11-24 09:34:37,069 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 15:36:45] 2025-11-24 09:34:37,069 | INFO     | [monitor] control thread has ended
[2025-11-24 15:36:45] 2025-11-24 09:34:37,345 [wrapper] ==== pilot stdout END ====
[2025-11-24 15:36:45] 2025-11-24 09:34:37,365 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 15:36:45] 2025-11-24 09:34:37,381 [wrapper] pilotpid: 1632121
[2025-11-24 15:36:45] 2025-11-24 09:34:37,405 [wrapper] Pilot exit status: 0
[2025-11-24 15:36:45] 2025-11-24 09:34:37,533 [wrapper] pandaids: 6895329097
[2025-11-24 15:36:45] 2025-11-24 09:34:37,687 [wrapper] cleanup supervisor_pilot 4169449 1632123
[2025-11-24 15:36:45] 2025-11-24 09:34:37,714 [wrapper] Test setup, not cleaning
[2025-11-24 15:36:45] 2025-11-24 09:34:37,771 [wrapper] apfmon messages muted
[2025-11-24 15:36:45] 2025-11-24 09:34:37,800 [wrapper] ==== wrapper stdout END ====
[2025-11-24 15:36:45] 2025-11-24 09:34:37,845 [wrapper] ==== wrapper stderr END ====
[2025-11-24 15:36:45]  *** Error codes and diagnostics ***
[2025-11-24 15:36:45]     "exeErrorCode": 0,
[2025-11-24 15:36:45]     "exeErrorDiag": "",
[2025-11-24 15:36:45]     "pilotErrorCode": 0,
[2025-11-24 15:36:45]     "pilotErrorDiag": "",
[2025-11-24 15:36:45]  *** Listing of results directory ***
[2025-11-24 15:36:45] total 1330340
[2025-11-24 15:36:45] -rwx------. 1 boincer umatlas     36292 Nov 21 13:42 runpilot2-wrapper.sh
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:42 queuedata.json
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:42 pilot3.tar.gz
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 15:36:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:00 run_atlas
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:00 job.xml
[2025-11-24 15:36:45] -rw-r--r--. 2 boincer umatlas 406573004 Nov 23 00:00 EVNT.47483658._000106.pool.root.1
[2025-11-24 15:36:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 15:36:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:00 shared
[2025-11-24 15:36:45] -rw-r--r--. 2 boincer umatlas    590093 Nov 23 00:00 input.tar.gz
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:00 boinc_lockfile
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 00:00 pandaJob.out
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas        57 Nov 23 00:00 setup.sh.local
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas    989784 Nov 23 00:01 agis_schedconf.cvmfs.json
[2025-11-24 15:36:45] drwx------. 5 boincer umatlas      4096 Nov 23 00:01 pilot3
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas       533 Nov 24 04:04 boinc_task_state.xml
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas 920337017 Nov 24 04:32 HITS.47556137._001056.pool.root.1
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas      1059 Nov 24 04:33 memory_monitor_summary.json
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas   1526164 Nov 24 04:33 agis_ddmendpoints.agis.ALL.json
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas   3036312 Nov 24 04:33 log.47556137._001056.job.log.tgz.1
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas      8625 Nov 24 04:34 heartbeat.json
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas        95 Nov 24 04:34 pilot_heartbeat.json
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas       893 Nov 24 04:34 pilotlog.txt
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas  12679520 Nov 24 04:34 log.47556137._001056.job.log.1
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas       353 Nov 24 04:34 output.list
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas       620 Nov 24 04:34 runtime_log
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas  15738880 Nov 24 04:34 result.tar.gz
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas      9356 Nov 24 04:34 runtime_log.err
[2025-11-24 15:36:45] -rw-------. 1 boincer umatlas       664 Nov 24 04:34 LwkNDm2Glg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJmHKDmAg9lAn.diag
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas      6843 Nov 24 15:36 init_data.xml
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 15:36 boinc_mmap_file
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas        28 Nov 24 15:36 wrapper_checkpoint.txt
[2025-11-24 15:36:45] -rw-r--r--. 1 boincer umatlas     21403 Nov 24 15:36 stderr.txt
[2025-11-24 15:36:46] HITS file was successfully produced:
[2025-11-24 15:36:46] -rw-------. 1 boincer umatlas 920337017 Nov 24 04:32 shared/HITS.pool.root.1
[2025-11-24 15:36:46]  *** Contents of shared directory: ***
[2025-11-24 15:36:46] total 1311788
[2025-11-24 15:36:46] -rw-r--r--. 2 boincer umatlas 406573004 Nov 23 00:00 ATLAS.root_0
[2025-11-24 15:36:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 15:36:46] -rw-r--r--. 2 boincer umatlas    590093 Nov 23 00:00 input.tar.gz
[2025-11-24 15:36:46] -rw-------. 1 boincer umatlas 920337017 Nov 24 04:32 HITS.pool.root.1
[2025-11-24 15:36:46] -rw-------. 1 boincer umatlas  15738880 Nov 24 04:34 result.tar.gz
15:36:47 (1623116): run_atlas exited; CPU time 251857.391858
15:36:47 (1623116): called boinc_finish(0)

</stderr_txt>
]]>

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