Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:16:33 (52867): wrapper (7.7.26015): starting
00:16:33 (52867): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:16:33] Arguments: --nthreads 9
[2025-11-22 00:16:33] Threads: 9
[2025-11-22 00:16:33] Checking for CVMFS
[2025-11-22 00:16:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:16:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:16:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:16:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:16:35] 2.13.2.0 6122 28927 364192 153161 3 148 24051972 40960000 18890 16776704 0 56278996 99.612 57363353 40348 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:16:35] CVMFS is ok
[2025-11-22 00:16:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:16:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:16:35] Further information can be found at the LHC@home message board.
[2025-11-22 00:16:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:16:35] Checking for apptainer binary...
[2025-11-22 00:16:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:16:35] Running /usr/bin/apptainer --version
[2025-11-22 00:16:36] apptainer version 1.4.4-1.el9
[2025-11-22 00:16:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:16:36] c-210-35-2.aglt2.org
[2025-11-22 00:16:36] apptainer works
[2025-11-22 00:16:36] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:16:36] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:16:36] Starting ATLAS job with PandaID=6894289118
[2025-11-22 00:16:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:29:33 (74106): wrapper (7.7.26015): starting
00:29:33 (74106): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:29:33] Arguments: --nthreads 9
[2025-11-22 00:29:33] Threads: 9
[2025-11-22 00:29:33] This job has been restarted, cleaning up previous attempt
[2025-11-22 00:29:33] Checking for CVMFS
[2025-11-22 00:29:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:29:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:29:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:29:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:29:34] 2.13.2.0 6122 28940 364564 153161 2 162 24070282 40960000 14127 16776704 0 56308431 99.612 57363355 40348 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:29:34] CVMFS is ok
[2025-11-22 00:29:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:29:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:29:34] Further information can be found at the LHC@home message board.
[2025-11-22 00:29:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:29:34] Checking for apptainer binary...
[2025-11-22 00:29:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:29:34] Running /usr/bin/apptainer --version
[2025-11-22 00:29:34] apptainer version 1.4.4-1.el9
[2025-11-22 00:29:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:29:35] c-210-35-2.aglt2.org
[2025-11-22 00:29:35] apptainer works
[2025-11-22 00:29:35] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:29:35] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:29:35] Starting ATLAS job with PandaID=6894289118
[2025-11-22 00:29:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:25:58]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:25:59] 2025-11-23 14:24:58,141 | INFO     | time since job start (118494s) is within the limit (172800.0s)
[2025-11-23 09:25:59] 2025-11-23 14:24:59,999 | INFO     | monitor loop #6863: job 0:6894289118 is in state 'finished'
[2025-11-23 09:25:59] 2025-11-23 14:24:59,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:25:59] 2025-11-23 14:25:00,175 | INFO     | time since job start (118496s) is within the limit (172800.0s)
[2025-11-23 09:25:59] 2025-11-23 14:25:02,182 | INFO     | time since job start (118498s) is within the limit (172800.0s)
[2025-11-23 09:25:59] 2025-11-23 14:25:02,504 | INFO     | monitor loop #6864: job 0:6894289118 is in state 'finished'
[2025-11-23 09:25:59] 2025-11-23 14:25:02,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:25:59] 2025-11-23 14:25:04,202 | INFO     | time since job start (118500s) is within the limit (172800.0s)
[2025-11-23 09:25:59] 2025-11-23 14:25:05,011 | INFO     | monitor loop #6865: job 0:6894289118 is in state 'finished'
[2025-11-23 09:25:59] 2025-11-23 14:25:05,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:25:59] 2025-11-23 14:25:06,220 | INFO     | time since job start (118502s) is within the limit (172800.0s)
[2025-11-23 09:25:59] 2025-11-23 14:25:07,546 | INFO     | monitor loop #6866: job 0:6894289118 is in state 'finished'
[2025-11-23 09:25:59] 2025-11-23 14:25:07,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:25:59] 2025-11-23 14:25:08,227 | INFO     | time since job start (118504s) is within the limit (172800.0s)
[2025-11-23 09:25:59] 2025-11-23 14:25:09,605 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 09:25:59] 2025-11-23 14:25:09,609 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2961.8453392857145
[2025-11-23 09:25:59] 2025-11-23 14:25:09,619 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894289118/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:25:59] 2025-11-23 14:25:09,620 | INFO     | extracted standard info from prmon json
[2025-11-23 09:25:59] 2025-11-23 14:25:09,620 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:25:59] 2025-11-23 14:25:09,620 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:25:59] 2025-11-23 14:25:09,732 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:25:59] 2025-11-23 14:25:09,735 | INFO     | sum of square deviations: 2267443655374.148
[2025-11-23 09:25:59] 2025-11-23 14:25:10,041 | INFO     | sum of deviations: 9058614938640.531
[2025-11-23 09:25:59] 2025-11-23 14:25:10,041 | INFO     | mean x: 1763848662.6913962
[2025-11-23 09:25:59] 2025-11-23 14:25:10,041 | INFO     | mean y: 3115818.092735703
[2025-11-23 09:25:59] 2025-11-23 14:25:10,041 | INFO     | intersect: -7043597694.495471
[2025-11-23 09:25:59] 2025-11-23 14:25:10,043 | INFO     | chi2: 15.178334218667533
[2025-11-23 09:25:59] 2025-11-23 14:25:10,050 | INFO     | sum of square deviations: 2249970289008.899
[2025-11-23 09:25:59] 2025-11-23 14:25:10,095 | INFO     | monitor loop #6867: job 0:6894289118 is in state 'finished'
[2025-11-23 09:25:59] 2025-11-23 14:25:10,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,187 | INFO     | sum of deviations: 9757392401267.809
[2025-11-23 09:25:59] 2025-11-23 14:25:10,188 | INFO     | mean x: 1763848510.2133265
[2025-11-23 09:25:59] 2025-11-23 14:25:10,188 | INFO     | mean y: 3121915.131198347
[2025-11-23 09:25:59] 2025-11-23 14:25:10,188 | INFO     | intersect: -7646117781.329071
[2025-11-23 09:25:59] 2025-11-23 14:25:10,190 | INFO     | chi2: 11.974386140486686
[2025-11-23 09:25:59] 2025-11-23 14:25:10,190 | INFO     | current chi2=11.974386140486686 (change=21.10869369472952 %)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,190 | INFO     | right removable region: 1935
[2025-11-23 09:25:59] 2025-11-23 14:25:10,197 | INFO     | sum of square deviations: 2249960116815.4683
[2025-11-23 09:25:59] 2025-11-23 14:25:10,332 | INFO     | time since job start (118506s) is within the limit (172800.0s)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,367 | INFO     | sum of deviations: 8379906544057.006
[2025-11-23 09:25:59] 2025-11-23 14:25:10,367 | INFO     | mean x: 1763848815.2138429
[2025-11-23 09:25:59] 2025-11-23 14:25:10,367 | INFO     | mean y: 3121737.2995867766
[2025-11-23 09:25:59] 2025-11-23 14:25:10,367 | INFO     | intersect: -6566278368.449017
[2025-11-23 09:25:59] 2025-11-23 14:25:10,369 | INFO     | chi2: 12.555815395150045
[2025-11-23 09:25:59] 2025-11-23 14:25:10,370 | INFO     | current chi2=12.555815395150045 (change=17.278041092889524 %)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,370 | INFO     | left removable region: 10
[2025-11-23 09:25:59] 2025-11-23 14:25:10,376 | INFO     | sum of square deviations: 2211828857159.7925
[2025-11-23 09:25:59] 2025-11-23 14:25:10,505 | INFO     | sum of deviations: 8920787861530.977
[2025-11-23 09:25:59] 2025-11-23 14:25:10,505 | INFO     | mean x: 1763848784.747013
[2025-11-23 09:25:59] 2025-11-23 14:25:10,505 | INFO     | mean y: 3131578.5605194806
[2025-11-23 09:25:59] 2025-11-23 14:25:10,505 | INFO     | intersect: -7110855011.139969
[2025-11-23 09:25:59] 2025-11-23 14:25:10,510 | INFO     | chi2: 8.350836895929845
[2025-11-23 09:25:59] 2025-11-23 14:25:10,510 | INFO     | current memory leak: 4.03 B/s (using 1925 data points, chi2=8.35)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,512 | INFO     | could have reported an average CPU frequency of 2858 MHz (68 samples)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,512 | INFO     | ..............................
[2025-11-23 09:25:59] 2025-11-23 14:25:10,512 | INFO     | . Timing measurements:
[2025-11-23 09:25:59] 2025-11-23 14:25:10,512 | INFO     | . get job = 0 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,512 | INFO     | . initial setup = 1 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,512 | INFO     | . payload setup = 20 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,512 | INFO     | . stage-in = 0 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,513 | INFO     | . payload execution = 118405 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,513 | INFO     | . stage-out = 9 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,513 | INFO     | . log creation = 4 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,513 | INFO     | ..............................
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | 
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | job summary report
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | --------------------------------------------------
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | PanDA job id: 6894289118
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | task id: 47533967
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | errors: (none)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | pilot state: finished 
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | transexitcode: 0
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | exeerrorcode: 0
[2025-11-23 09:25:59] 2025-11-23 14:25:10,836 | INFO     | exeerrordiag: 
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | exitcode: 0
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | exitmsg: OK
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | cpuconsumptiontime: 236628 s
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | nevents: 1000
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | neventsw: 0
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | pid: 115337
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | pgrp: 115337
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | corecount: 9
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | event service: False
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | sizes: {0: 2298585, 1: 2298784, 12: 2298784, 15: 2299074, 23: 2299102, 118429: 2378909, 118430: 2379036, 118441: 2388142, 118472: 2388332}
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | --------------------------------------------------
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | 
[2025-11-23 09:25:59] 2025-11-23 14:25:10,837 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 09:25:59] 2025-11-23 14:25:10,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,988 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,988 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,988 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,990 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,990 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:25:59] 2025-11-23 14:25:10,990 | INFO     | job 6894289118 has completed (purged errors)
[2025-11-23 09:25:59] 2025-11-23 14:25:10,990 | INFO     | overall cleanup function is called
[2025-11-23 09:25:59] 2025-11-23 14:25:12,025 | INFO     | --- collectZombieJob: --- 10, [115337]
[2025-11-23 09:25:59] 2025-11-23 14:25:12,025 | INFO     | zombie collector waiting for pid 115337
[2025-11-23 09:25:59] 2025-11-23 14:25:12,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:25:59] 2025-11-23 14:25:12,025 | INFO     | collected zombie processes
[2025-11-23 09:25:59] 2025-11-23 14:25:12,025 | INFO     | will attempt to kill all subprocesses of pid=115337
[2025-11-23 09:25:59] 2025-11-23 14:25:13,044 | INFO     | process IDs to be killed: [115337] (in reverse order)
[2025-11-23 09:25:59] 2025-11-23 14:25:13,934 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:25:59] 2025-11-23 14:25:13,935 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:25:59] 2025-11-23 14:25:13,956 | INFO     | did not find any defunct processes belonging to 115337
[2025-11-23 09:25:59] 2025-11-23 14:25:13,991 | INFO     | did not find any defunct processes belonging to 115337
[2025-11-23 09:25:59] 2025-11-23 14:25:14,000 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:25:59] 2025-11-23 14:25:14,000 | INFO     | ready for new job
[2025-11-23 09:25:59] 2025-11-23 14:25:14,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:25:59] 2025-11-23 14:25:14,008 | INFO     | ***************************************
[2025-11-23 09:25:59] 2025-11-23 14:25:14,009 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:25:59] 2025-11-23 14:25:14,009 | INFO     | ***************************************
[2025-11-23 09:25:59] 2025-11-23 14:25:14,009 | INFO     | 
[2025-11-23 09:25:59] 2025-11-23 14:25:14,017 | INFO     | architecture information:
[2025-11-23 09:25:59] 2025-11-23 14:25:14,018 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:25:59] 2025-11-23 14:25:14,064 | INFO     | cat /etc/os-release:
[2025-11-23 09:25:59] NAME="CentOS Linux"
[2025-11-23 09:25:59] VERSION="7 (Core)"
[2025-11-23 09:25:59] ID="centos"
[2025-11-23 09:25:59] ID_LIKE="rhel fedora"
[2025-11-23 09:25:59] VERSION_ID="7"
[2025-11-23 09:25:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:25:59] ANSI_COLOR="0;31"
[2025-11-23 09:25:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:25:59] HOME_URL="https://www.centos.org/"
[2025-11-23 09:25:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:25:59] 
[2025-11-23 09:25:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:25:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:25:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:25:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:25:59] 
[2025-11-23 09:25:59] 2025-11-23 14:25:14,064 | INFO     | ***************************************
[2025-11-23 09:25:59] 2025-11-23 14:25:14,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 09:25:59] 2025-11-23 14:25:14,612 | INFO     | sufficient remaining disk space (68145905664 B)
[2025-11-23 09:25:59] 2025-11-23 14:25:14,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:25:59] 2025-11-23 14:25:14,613 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:25:59] 2025-11-23 14:25:14,613 | INFO     | update_server=False
[2025-11-23 09:25:59] 2025-11-23 14:25:14,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:25:59] 2025-11-23 14:25:14,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:25:59] 2025-11-23 14:25:14,613 | INFO     | aborting loop
[2025-11-23 09:25:59] 2025-11-23 14:25:15,127 | INFO     | all payload control threads have been joined
[2025-11-23 09:25:59] 2025-11-23 14:25:15,529 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:25:59] 2025-11-23 14:25:15,623 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:15,623 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:15,649 | INFO     | all data control threads have been joined
[2025-11-23 09:25:59] 2025-11-23 14:25:15,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:25:59] 2025-11-23 14:25:15,815 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:15,842 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:15,854 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,056 | INFO     | all job control threads have been joined
[2025-11-23 09:25:59] 2025-11-23 14:25:16,134 | INFO     | [payload] control thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,156 | INFO     | [job] validate thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,233 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,233 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,623 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,655 | INFO     | [data] control thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,722 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:16,906 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:17,063 | INFO     | [job] control thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:17,551 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:17,644 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:25:59] 2025-11-23 14:25:21,655 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:25:59] 2025-11-23 14:25:43,816 | INFO     | PID=88648 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 09:25:59] 2025-11-23 14:25:43,817 | INFO     | .. there are 19 such processes running
[2025-11-23 09:25:59] 2025-11-23 14:25:43,818 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:25:59] 2025-11-23 14:25:43,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:25:59] 2025-11-23 14:25:43,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:25:59] 2025-11-23 14:25:50,839 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:25:59] 2025-11-23 14:25:52,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801648719680)>', '<ExcThread(monitor, started 139801185482496)>']
[2025-11-23 09:25:59] 2025-11-23 14:25:52,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:25:59] 2025-11-23 14:25:52,882 | INFO     | [monitor] control thread has ended
[2025-11-23 09:25:59] 2025-11-23 14:25:57,500 | INFO     | all workflow threads have been joined
[2025-11-23 09:25:59] 2025-11-23 14:25:57,500 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:25:59] 2025-11-23 14:25:57,500 | INFO     | traces error code: 0
[2025-11-23 09:25:59] 2025-11-23 14:25:57,500 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:25:59] 2025-11-23 14:25:58,002 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:25:59] 2025-11-23 14:25:58,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:25:59] 2025-11-23 14:25:58,030 [wrapper] pilotpid: 88648
[2025-11-23 09:25:59] 2025-11-23 14:25:58,051 [wrapper] Pilot exit status: 0
[2025-11-23 09:25:59] 2025-11-23 14:25:58,182 [wrapper] pandaids: 6894289118 6894289118
[2025-11-23 09:25:59] 2025-11-23 14:25:58,294 [wrapper] cleanup supervisor_pilot 3920288 88650
[2025-11-23 09:25:59] 2025-11-23 14:25:58,296 [wrapper] Test setup, not cleaning
[2025-11-23 09:25:59] 2025-11-23 14:25:58,299 [wrapper] apfmon messages muted
[2025-11-23 09:25:59] 2025-11-23 14:25:58,301 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:25:59] 2025-11-23 14:25:58,303 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:25:59]  *** Error codes and diagnostics ***
[2025-11-23 09:25:59]     "exeErrorCode": 0,
[2025-11-23 09:25:59]     "exeErrorDiag": "",
[2025-11-23 09:25:59]     "pilotErrorCode": 0,
[2025-11-23 09:25:59]     "pilotErrorDiag": "",
[2025-11-23 09:25:59]  *** Listing of results directory ***
[2025-11-23 09:25:59] total 1726932
[2025-11-23 09:25:59] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:50 pilot3.tar.gz
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:12 queuedata.json
[2025-11-23 09:25:59] -rwx------. 1 boincer umatlas     36292 Nov 21 06:13 runpilot2-wrapper.sh
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:25:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:16 run_atlas
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:16 job.xml
[2025-11-23 09:25:59] -rw-r--r--. 3 boincer umatlas 408250694 Nov 22 00:16 EVNT.47493127._002397.pool.root.1
[2025-11-23 09:25:59] -rw-r--r--. 3 boincer umatlas 408250694 Nov 22 00:16 ATLAS.root_0
[2025-11-23 09:25:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:16 start_atlas.sh
[2025-11-23 09:25:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:16 shared
[2025-11-23 09:25:59] -rw-r--r--. 2 boincer umatlas    590109 Nov 22 00:16 input.tar.gz
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:16 boinc_lockfile
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 00:29 pandaJob.out
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas        57 Nov 22 00:29 setup.sh.local
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas    989752 Nov 22 00:30 agis_schedconf.cvmfs.json
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas       533 Nov 23 08:58 boinc_task_state.xml
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas      6841 Nov 23 09:19 init_data.xml
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas 912938490 Nov 23 09:23 HITS.47533967._003690.pool.root.1
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas      1074 Nov 23 09:24 memory_monitor_summary.json
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas   1526164 Nov 23 09:24 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas   2894869 Nov 23 09:24 log.47533967._003690.job.log.tgz.1
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas      8673 Nov 23 09:25 heartbeat.json
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas        96 Nov 23 09:25 pilot_heartbeat.json
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 09:25 boinc_mmap_file
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas        29 Nov 23 09:25 wrapper_checkpoint.txt
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas      4822 Nov 23 09:25 pilotlog.txt
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas  14607634 Nov 23 09:25 log.47533967._003690.job.log.1
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas       353 Nov 23 09:25 output.list
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas       620 Nov 23 09:25 runtime_log
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas  17520640 Nov 23 09:25 result.tar.gz
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas      9439 Nov 23 09:25 runtime_log.err
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas       796 Nov 23 09:25 pT3NDmtFeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWYHKDm4lpUKn.diag
[2025-11-23 09:25:59] -rw-r--r--. 1 boincer umatlas     23946 Nov 23 09:25 stderr.txt
[2025-11-23 09:25:59] HITS file was successfully produced:
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas 912938490 Nov 23 09:23 shared/HITS.pool.root.1
[2025-11-23 09:25:59]  *** Contents of shared directory: ***
[2025-11-23 09:25:59] total 1307944
[2025-11-23 09:25:59] -rw-r--r--. 3 boincer umatlas 408250694 Nov 22 00:16 ATLAS.root_0
[2025-11-23 09:25:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:16 start_atlas.sh
[2025-11-23 09:25:59] -rw-r--r--. 2 boincer umatlas    590109 Nov 22 00:16 input.tar.gz
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas 912938490 Nov 23 09:23 HITS.pool.root.1
[2025-11-23 09:25:59] -rw-------. 1 boincer umatlas  17520640 Nov 23 09:25 result.tar.gz
09:26:00 (74106): run_atlas exited; CPU time 238488.811577
09:26:00 (74106): called boinc_finish(0)

</stderr_txt>
]]>

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