Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:34:18 (1571487): wrapper (7.7.26015): starting
16:34:18 (1571487): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 16:34:18] Arguments: --nthreads 8
[2025-11-22 16:34:18] Threads: 8
[2025-11-22 16:34:18] Checking for CVMFS
[2025-11-22 16:34:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 16:34:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 16:34:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 16:34:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 16:34:19] 2.13.3.0 11250 24836 335764 153185 1 170 31759365 32935937 14110 16776704 0 85440493 99.496 108552425 38951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 16:34:19] CVMFS is ok
[2025-11-22 16:34:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 16:34:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 16:34:19] Further information can be found at the LHC@home message board.
[2025-11-22 16:34:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 16:34:19] Checking for apptainer binary...
[2025-11-22 16:34:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 16:34:19] Running /usr/bin/apptainer --version
[2025-11-22 16:34:19] apptainer version 1.4.4-1.el9
[2025-11-22 16:34:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 16:34:20] c6-2-29-1.aglt2.org
[2025-11-22 16:34:20] apptainer works
[2025-11-22 16:34:20] Set ATHENA_PROC_NUMBER=8
[2025-11-22 16:34:20] Set ATHENA_CORE_NUMBER=8
[2025-11-22 16:34:20] Starting ATLAS job with PandaID=6895329049
[2025-11-22 16:34:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 19:13:14]  *** The last 200 lines of the pilot log: ***
[2025-11-23 19:13:14] 2025-11-24 00:12:38,225 | INFO     | monitor loop #5656: job 0:6895329049 is in state 'finished'
[2025-11-23 19:13:14] 2025-11-24 00:12:38,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 19:13:14] 2025-11-24 00:12:38,324 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 19:13:14] 2025-11-24 00:12:38,344 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2811.1880535714286
[2025-11-23 19:13:14] 2025-11-24 00:12:38,364 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895329049/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 19:13:14] 2025-11-24 00:12:38,365 | INFO     | extracted standard info from prmon json
[2025-11-23 19:13:14] 2025-11-24 00:12:38,365 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 19:13:14] 2025-11-24 00:12:38,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 19:13:14] 2025-11-24 00:12:38,386 | INFO     | fitting pss+swap vs Time
[2025-11-23 19:13:14] 2025-11-24 00:12:38,388 | INFO     | sum of square deviations: 1199971030875.7444
[2025-11-23 19:13:14] 2025-11-24 00:12:38,808 | INFO     | sum of deviations: 5122226715202.717
[2025-11-23 19:13:14] 2025-11-24 00:12:38,809 | INFO     | mean x: 1763895220.987261
[2025-11-23 19:13:14] 2025-11-24 00:12:38,809 | INFO     | mean y: 2930689.185987261
[2025-11-23 19:13:14] 2025-11-24 00:12:38,809 | INFO     | intersect: -7526477097.571591
[2025-11-23 19:13:14] 2025-11-24 00:12:38,810 | INFO     | chi2: 8.810900091366726
[2025-11-23 19:13:14] 2025-11-24 00:12:38,840 | INFO     | sum of square deviations: 1188546129213.0735
[2025-11-23 19:13:14] 2025-11-24 00:12:39,178 | INFO     | sum of deviations: 5651779297348.011
[2025-11-23 19:13:14] 2025-11-24 00:12:39,179 | INFO     | mean x: 1763895068.510543
[2025-11-23 19:13:14] 2025-11-24 00:12:39,179 | INFO     | mean y: 2937755.7872204473
[2025-11-23 19:13:14] 2025-11-24 00:12:39,179 | INFO     | intersect: -8384743114.035332
[2025-11-23 19:13:14] 2025-11-24 00:12:39,181 | INFO     | chi2: 5.70147950813212
[2025-11-23 19:13:14] 2025-11-24 00:12:39,181 | INFO     | current chi2=5.70147950813212 (change=35.29061220750126 %)
[2025-11-23 19:13:14] 2025-11-24 00:12:39,219 | INFO     | sum of square deviations: 1177193638291.459
[2025-11-23 19:13:14] 2025-11-24 00:12:39,518 | INFO     | time since job start (95869s) is within the limit (172800.0s)
[2025-11-23 19:13:14] 2025-11-24 00:12:39,559 | INFO     | sum of deviations: 6069301016870.148
[2025-11-23 19:13:14] 2025-11-24 00:12:39,559 | INFO     | mean x: 1763894916.0314102
[2025-11-23 19:13:14] 2025-11-24 00:12:39,559 | INFO     | mean y: 2943360.2416666667
[2025-11-23 19:13:14] 2025-11-24 00:12:39,559 | INFO     | intersect: -9091235251.74888
[2025-11-23 19:13:14] 2025-11-24 00:12:39,597 | INFO     | chi2: 3.471711918518313
[2025-11-23 19:13:14] 2025-11-24 00:12:39,597 | INFO     | current chi2=3.471711918518313 (change=39.10857850902473 %)
[2025-11-23 19:13:14] 2025-11-24 00:12:39,599 | INFO     | sum of square deviations: 1165912753415.463
[2025-11-23 19:13:14] 2025-11-24 00:12:40,047 | INFO     | sum of deviations: 6296343145635.278
[2025-11-23 19:13:14] 2025-11-24 00:12:40,048 | INFO     | mean x: 1763894763.5459807
[2025-11-23 19:13:14] 2025-11-24 00:12:40,048 | INFO     | mean y: 2946428.877170418
[2025-11-23 19:13:14] 2025-11-24 00:12:40,048 | INFO     | intersect: -9522712049.03223
[2025-11-23 19:13:14] 2025-11-24 00:12:40,049 | INFO     | chi2: 2.749214528423481
[2025-11-23 19:13:14] 2025-11-24 00:12:40,050 | INFO     | current chi2=2.749214528423481 (change=20.81098337223746 %)
[2025-11-23 19:13:14] 2025-11-24 00:12:40,050 | INFO     | right removable region: 1554
[2025-11-23 19:13:14] 2025-11-24 00:12:40,096 | INFO     | sum of square deviations: 1188539245375.0955
[2025-11-23 19:13:14] 2025-11-24 00:12:40,322 | INFO     | sum of deviations: 4693747999568.829
[2025-11-23 19:13:14] 2025-11-24 00:12:40,322 | INFO     | mean x: 1763895373.5099041
[2025-11-23 19:13:14] 2025-11-24 00:12:40,322 | INFO     | mean y: 2936401.6242811503
[2025-11-23 19:13:14] 2025-11-24 00:12:40,323 | INFO     | intersect: -6962992921.347243
[2025-11-23 19:13:14] 2025-11-24 00:12:40,330 | INFO     | chi2: 6.758059554941003
[2025-11-23 19:13:14] 2025-11-24 00:12:40,331 | INFO     | current chi2=6.758059554941003 (change=23.29887429363975 %)
[2025-11-23 19:13:14] 2025-11-24 00:12:40,331 | INFO     | left removable region: 10
[2025-11-23 19:13:14] 2025-11-24 00:12:40,337 | INFO     | sum of square deviations: 1141337607239.197
[2025-11-23 19:13:14] 2025-11-24 00:12:40,532 | INFO     | sum of deviations: 5799171040259.188
[2025-11-23 19:13:14] 2025-11-24 00:12:40,532 | INFO     | mean x: 1763895038.0874352
[2025-11-23 19:13:14] 2025-11-24 00:12:40,532 | INFO     | mean y: 2954228.98380829
[2025-11-23 19:13:14] 2025-11-24 00:12:40,532 | INFO     | intersect: -8959450022.004612
[2025-11-23 19:13:14] 2025-11-24 00:12:40,534 | INFO     | chi2: 0.5383410960331211
[2025-11-23 19:13:14] 2025-11-24 00:12:40,546 | INFO     | current memory leak: 5.08 B/s (using 1544 data points, chi2=0.54)
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | could have reported an average CPU frequency of 2788 MHz (55 samples)
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | ..............................
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | . Timing measurements:
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | . get job = 0 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | . initial setup = 2 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | . payload setup = 22 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | . stage-in = 0 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | . payload execution = 95764 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,548 | INFO     | . stage-out = 7 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,549 | INFO     | . log creation = 1 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,549 | INFO     | ..............................
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | 
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | job summary report
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | --------------------------------------------------
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | PanDA job id: 6895329049
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | task id: 47556137
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | errors: (none)
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | pilot state: finished 
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | transexitcode: 0
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | exeerrorcode: 0
[2025-11-23 19:13:14] 2025-11-24 00:12:40,743 | INFO     | exeerrordiag: 
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | exitcode: 0
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | exitmsg: OK
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | cpuconsumptiontime: 241132 s
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | nevents: 1000
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | neventsw: 0
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | pid: 1583580
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | pgrp: 1583580
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | corecount: 8
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | event service: False
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | sizes: {0: 2298635, 1: 2298834, 12: 2298834, 16: 2299124, 23: 2299152, 95790: 2368379, 95791: 2368506, 95799: 2377556, 95800: 2377612, 95836: 2377858}
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | --------------------------------------------------
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | 
[2025-11-23 19:13:14] 2025-11-24 00:12:40,744 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-23 19:13:14] 2025-11-24 00:12:40,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 19:13:14] 2025-11-24 00:12:40,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,785 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 19:13:14] 2025-11-24 00:12:40,785 | INFO     | job 6895329049 has completed (purged errors)
[2025-11-23 19:13:14] 2025-11-24 00:12:40,785 | INFO     | overall cleanup function is called
[2025-11-23 19:13:14] 2025-11-24 00:12:41,800 | INFO     | --- collectZombieJob: --- 10, [1583580]
[2025-11-23 19:13:14] 2025-11-24 00:12:41,800 | INFO     | zombie collector waiting for pid 1583580
[2025-11-23 19:13:14] 2025-11-24 00:12:41,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 19:13:14] 2025-11-24 00:12:41,800 | INFO     | collected zombie processes
[2025-11-23 19:13:14] 2025-11-24 00:12:41,801 | INFO     | will attempt to kill all subprocesses of pid=1583580
[2025-11-23 19:13:14] 2025-11-24 00:12:43,327 | INFO     | process IDs to be killed: [1583580] (in reverse order)
[2025-11-23 19:13:14] 2025-11-24 00:12:43,620 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 19:13:14] 2025-11-24 00:12:43,620 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 19:13:14] 2025-11-24 00:12:43,631 | INFO     | did not find any defunct processes belonging to 1583580
[2025-11-23 19:13:14] 2025-11-24 00:12:43,642 | INFO     | did not find any defunct processes belonging to 1583580
[2025-11-23 19:13:14] 2025-11-24 00:12:43,643 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 19:13:14] 2025-11-24 00:12:43,644 | INFO     | ready for new job
[2025-11-23 19:13:14] 2025-11-24 00:12:43,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 19:13:14] 2025-11-24 00:12:43,650 | INFO     | ***************************************
[2025-11-23 19:13:14] 2025-11-24 00:12:43,650 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 19:13:14] 2025-11-24 00:12:43,650 | INFO     | ***************************************
[2025-11-23 19:13:14] 2025-11-24 00:12:43,650 | INFO     | 
[2025-11-23 19:13:14] 2025-11-24 00:12:43,678 | INFO     | architecture information:
[2025-11-23 19:13:14] 2025-11-24 00:12:43,686 | INFO     | executing command: cat /etc/os-release
[2025-11-23 19:13:14] 2025-11-24 00:12:43,747 | INFO     | cat /etc/os-release:
[2025-11-23 19:13:14] NAME="CentOS Linux"
[2025-11-23 19:13:14] VERSION="7 (Core)"
[2025-11-23 19:13:14] ID="centos"
[2025-11-23 19:13:14] ID_LIKE="rhel fedora"
[2025-11-23 19:13:14] VERSION_ID="7"
[2025-11-23 19:13:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 19:13:14] ANSI_COLOR="0;31"
[2025-11-23 19:13:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 19:13:14] HOME_URL="https://www.centos.org/"
[2025-11-23 19:13:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 19:13:14] 
[2025-11-23 19:13:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 19:13:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 19:13:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 19:13:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 19:13:14] 
[2025-11-23 19:13:14] 2025-11-24 00:12:43,748 | INFO     | ***************************************
[2025-11-23 19:13:14] 2025-11-24 00:12:44,261 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-23 19:13:14] 2025-11-24 00:12:44,368 | INFO     | sufficient remaining disk space (72135737344 B)
[2025-11-23 19:13:14] 2025-11-24 00:12:44,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 19:13:14] 2025-11-24 00:12:44,369 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 19:13:14] 2025-11-24 00:12:44,369 | INFO     | update_server=False
[2025-11-23 19:13:14] 2025-11-24 00:12:44,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 19:13:14] 2025-11-24 00:12:44,369 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:13:14] 2025-11-24 00:12:44,369 | INFO     | aborting loop
[2025-11-23 19:13:14] 2025-11-24 00:12:44,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 19:13:14] 2025-11-24 00:12:44,848 | INFO     | all data control threads have been joined
[2025-11-23 19:13:14] 2025-11-24 00:12:45,168 | INFO     | all job control threads have been joined
[2025-11-23 19:13:14] 2025-11-24 00:12:45,386 | INFO     | [job] retrieve thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:45,387 | INFO     | [job] job monitor thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:45,446 | INFO     | [payload] failed_post thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:45,471 | INFO     | all payload control threads have been joined
[2025-11-23 19:13:14] 2025-11-24 00:12:45,762 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:13:14] 2025-11-24 00:12:45,854 | INFO     | [data] control thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:45,975 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,174 | INFO     | [job] control thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,360 | INFO     | [payload] validate_post thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,374 | INFO     | [data] copytool_in thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,477 | INFO     | [payload] control thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,528 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,718 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,720 | INFO     | [data] copytool_out thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,740 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,768 | INFO     | [job] queue monitor thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:46,855 | INFO     | [job] validate thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:47,290 | INFO     | [monitor] cgroup control has ended
[2025-11-23 19:13:14] 2025-11-24 00:12:47,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 19:13:14] 2025-11-24 00:12:51,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 19:13:14] 2025-11-24 00:12:53,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140291229046592)>', '<ExcThread(monitor, started 140290568464128)>']
[2025-11-23 19:13:14] 2025-11-24 00:12:58,464 | INFO     | all workflow threads have been joined
[2025-11-23 19:13:14] 2025-11-24 00:12:58,464 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 19:13:14] 2025-11-24 00:12:58,465 | INFO     | traces error code: 0
[2025-11-23 19:13:14] 2025-11-24 00:12:58,465 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 19:13:14] 2025-11-24 00:13:12,989 | INFO     | PID=1576438 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 19:13:14] 2025-11-24 00:13:12,990 | INFO     | .. there are 17 such processes running
[2025-11-23 19:13:14] 2025-11-24 00:13:12,992 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 19:13:14] 2025-11-24 00:13:12,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 19:13:14] 2025-11-24 00:13:12,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 19:13:14] 2025-11-24 00:13:12,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 19:13:14] 2025-11-24 00:13:12,992 | INFO     | [monitor] control thread has ended
[2025-11-23 19:13:14] 2025-11-24 00:13:13,386 [wrapper] ==== pilot stdout END ====
[2025-11-23 19:13:14] 2025-11-24 00:13:13,405 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 19:13:14] 2025-11-24 00:13:13,420 [wrapper] pilotpid: 1576438
[2025-11-23 19:13:14] 2025-11-24 00:13:13,434 [wrapper] Pilot exit status: 0
[2025-11-23 19:13:14] 2025-11-24 00:13:13,539 [wrapper] pandaids: 6895329049
[2025-11-23 19:13:14] 2025-11-24 00:13:13,726 [wrapper] cleanup supervisor_pilot 1082854 1576439
[2025-11-23 19:13:14] 2025-11-24 00:13:13,746 [wrapper] Test setup, not cleaning
[2025-11-23 19:13:14] 2025-11-24 00:13:13,786 [wrapper] apfmon messages muted
[2025-11-23 19:13:14] 2025-11-24 00:13:13,805 [wrapper] ==== wrapper stdout END ====
[2025-11-23 19:13:14] 2025-11-24 00:13:13,824 [wrapper] ==== wrapper stderr END ====
[2025-11-23 19:13:14]  *** Error codes and diagnostics ***
[2025-11-23 19:13:14]     "exeErrorCode": 0,
[2025-11-23 19:13:14]     "exeErrorDiag": "",
[2025-11-23 19:13:14]     "pilotErrorCode": 0,
[2025-11-23 19:13:14]     "pilotErrorDiag": "",
[2025-11-23 19:13:14]  *** Listing of results directory ***
[2025-11-23 19:13:14] total 1327148
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:30 pilot3.tar.gz
[2025-11-23 19:13:14] -rwx------. 1 boincer umatlas     36292 Nov 21 13:36 runpilot2-wrapper.sh
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:36 queuedata.json
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas       100 Nov 22 16:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 19:13:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 16:34 run_atlas
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas       105 Nov 22 16:34 job.xml
[2025-11-23 19:13:14] -rw-r--r--. 2 boincer umatlas 409716072 Nov 22 16:34 EVNT.47483658._000103.pool.root.1
[2025-11-23 19:13:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 16:34 shared
[2025-11-23 19:13:14] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 16:34 input.tar.gz
[2025-11-23 19:13:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 16:34 start_atlas.sh
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas         0 Nov 22 16:34 boinc_lockfile
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 16:34 pandaJob.out
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas        57 Nov 22 16:34 setup.sh.local
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas    989768 Nov 22 16:34 agis_schedconf.cvmfs.json
[2025-11-23 19:13:14] drwx------. 5 boincer umatlas      4096 Nov 22 16:34 pilot3
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas       533 Nov 23 18:51 boinc_task_state.xml
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas 916518438 Nov 23 19:10 HITS.47556137._001029.pool.root.1
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas      6842 Nov 23 19:11 init_data.xml
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas      1056 Nov 23 19:11 memory_monitor_summary.json
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas   1526164 Nov 23 19:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas   2524469 Nov 23 19:12 log.47556137._001029.job.log.tgz.1
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas      8625 Nov 23 19:12 heartbeat.json
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas        29 Nov 23 19:13 wrapper_checkpoint.txt
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 19:13 boinc_mmap_file
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas        95 Nov 23 19:13 pilot_heartbeat.json
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas       823 Nov 23 19:13 pilotlog.txt
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas  11897979 Nov 23 19:13 log.47556137._001029.job.log.1
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas       353 Nov 23 19:13 output.list
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas       620 Nov 23 19:13 runtime_log
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas  14438400 Nov 23 19:13 result.tar.gz
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas       661 Nov 23 19:13 rvbNDmtAlg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQdJKDmWM04pm.diag
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas      9348 Nov 23 19:13 runtime_log.err
[2025-11-23 19:13:14] -rw-r--r--. 1 boincer umatlas     21360 Nov 23 19:13 stderr.txt
[2025-11-23 19:13:14] HITS file was successfully produced:
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas 916518438 Nov 23 19:10 shared/HITS.pool.root.1
[2025-11-23 19:13:14]  *** Contents of shared directory: ***
[2025-11-23 19:13:14] total 1309860
[2025-11-23 19:13:14] -rw-r--r--. 2 boincer umatlas 409716072 Nov 22 16:34 ATLAS.root_0
[2025-11-23 19:13:14] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 16:34 input.tar.gz
[2025-11-23 19:13:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 16:34 start_atlas.sh
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas 916518438 Nov 23 19:10 HITS.pool.root.1
[2025-11-23 19:13:14] -rw-------. 1 boincer umatlas  14438400 Nov 23 19:13 result.tar.gz
19:13:16 (1571487): run_atlas exited; CPU time 242646.102333
19:13:16 (1571487): called boinc_finish(0)

</stderr_txt>
]]>

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