Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:23:15 (1319970): wrapper (7.7.26015): starting
09:23:15 (1319970): wrapper: running run_atlas (--nthreads 10)
[2025-11-23 09:23:15] Arguments: --nthreads 10
[2025-11-23 09:23:15] Threads: 10
[2025-11-23 09:23:15] Checking for CVMFS
[2025-11-23 09:23:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:23:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:23:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:23:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:23:16] 2.13.3.0 12161 25845 312156 153211 2 166 25442482 40960000 16246 16776704 0 65041004 99.553 77745236 38993 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 09:23:16] CVMFS is ok
[2025-11-23 09:23:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:23:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:23:16] Further information can be found at the LHC@home message board.
[2025-11-23 09:23:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:23:16] Checking for apptainer binary...
[2025-11-23 09:23:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:23:16] Running /usr/bin/apptainer --version
[2025-11-23 09:23:16] apptainer version 1.4.4-1.el9
[2025-11-23 09:23:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:23:17] c6-5-7-1.aglt2.org
[2025-11-23 09:23:17] apptainer works
[2025-11-23 09:23:17] Set ATHENA_PROC_NUMBER=10
[2025-11-23 09:23:17] Set ATHENA_CORE_NUMBER=10
[2025-11-23 09:23:17] Starting ATLAS job with PandaID=6895329033
[2025-11-23 09:23:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:32:29]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:32:29] 2025-11-24 15:31:28,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:32:29] 2025-11-24 15:31:29,776 | INFO     | time since job start (90479s) is within the limit (172800.0s)
[2025-11-24 10:32:29] 2025-11-24 15:31:31,491 | INFO     | monitor loop #5347: job 0:6895329033 is in state 'finished'
[2025-11-24 10:32:29] 2025-11-24 15:31:31,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:32:29] 2025-11-24 15:31:31,783 | INFO     | time since job start (90481s) is within the limit (172800.0s)
[2025-11-24 10:32:29] 2025-11-24 15:31:33,790 | INFO     | time since job start (90483s) is within the limit (172800.0s)
[2025-11-24 10:32:29] 2025-11-24 15:31:33,995 | INFO     | monitor loop #5348: job 0:6895329033 is in state 'finished'
[2025-11-24 10:32:29] 2025-11-24 15:31:33,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:32:29] 2025-11-24 15:31:35,798 | INFO     | time since job start (90485s) is within the limit (172800.0s)
[2025-11-24 10:32:29] 2025-11-24 15:31:36,506 | INFO     | monitor loop #5349: job 0:6895329033 is in state 'finished'
[2025-11-24 10:32:29] 2025-11-24 15:31:36,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:32:29] 2025-11-24 15:31:37,805 | INFO     | time since job start (90487s) is within the limit (172800.0s)
[2025-11-24 10:32:29] 2025-11-24 15:31:37,805 | INFO     | 90489s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 10:32:29] 2025-11-24 15:31:39,014 | INFO     | monitor loop #5350: job 0:6895329033 is in state 'finished'
[2025-11-24 10:32:29] 2025-11-24 15:31:39,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:32:29] 2025-11-24 15:31:39,817 | INFO     | time since job start (90489s) is within the limit (172800.0s)
[2025-11-24 10:32:29] 2025-11-24 15:31:40,414 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 10:32:29] 2025-11-24 15:31:40,426 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2991.7693571428576
[2025-11-24 10:32:29] 2025-11-24 15:31:40,467 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895329033/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 10:32:29] 2025-11-24 15:31:40,476 | INFO     | extracted standard info from prmon json
[2025-11-24 10:32:29] 2025-11-24 15:31:40,476 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 10:32:29] 2025-11-24 15:31:40,476 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 10:32:29] 2025-11-24 15:31:40,542 | INFO     | fitting pss+swap vs Time
[2025-11-24 10:32:29] 2025-11-24 15:31:40,544 | INFO     | sum of square deviations: 1011511090384.9929
[2025-11-24 10:32:29] 2025-11-24 15:31:40,641 | INFO     | sum of deviations: 5083182658037.872
[2025-11-24 10:32:29] 2025-11-24 15:31:40,642 | INFO     | mean x: 1763953044.3243425
[2025-11-24 10:32:29] 2025-11-24 15:31:40,642 | INFO     | mean y: 3298421.715441672
[2025-11-24 10:32:29] 2025-11-24 15:31:40,642 | INFO     | intersect: -8861157548.895672
[2025-11-24 10:32:29] 2025-11-24 15:31:40,643 | INFO     | chi2: 14.95851136373498
[2025-11-24 10:32:29] 2025-11-24 15:31:40,657 | INFO     | sum of square deviations: 1001318055103.675
[2025-11-24 10:32:29] 2025-11-24 15:31:40,805 | INFO     | sum of deviations: 5656583075333.257
[2025-11-24 10:32:29] 2025-11-24 15:31:40,806 | INFO     | mean x: 1763952891.8389716
[2025-11-24 10:32:29] 2025-11-24 15:31:40,806 | INFO     | mean y: 3306998.589309878
[2025-11-24 10:32:29] 2025-11-24 15:31:40,806 | INFO     | intersect: -9961504903.886951
[2025-11-24 10:32:29] 2025-11-24 15:31:40,862 | INFO     | chi2: 11.631709275418768
[2025-11-24 10:32:29] 2025-11-24 15:31:40,862 | INFO     | current chi2=11.631709275418768 (change=22.2401949460133 %)
[2025-11-24 10:32:29] 2025-11-24 15:31:40,862 | INFO     | right removable region: 1477
[2025-11-24 10:32:29] 2025-11-24 15:31:40,864 | INFO     | sum of square deviations: 1001314414095.7015
[2025-11-24 10:32:29] 2025-11-24 15:31:41,220 | INFO     | sum of deviations: 4670900515054.691
[2025-11-24 10:32:29] 2025-11-24 15:31:41,220 | INFO     | mean x: 1763953196.8369417
[2025-11-24 10:32:29] 2025-11-24 15:31:41,220 | INFO     | mean y: 3304581.8078484437
[2025-11-24 10:32:29] 2025-11-24 15:31:41,220 | INFO     | intersect: -8225129743.767103
[2025-11-24 10:32:29] 2025-11-24 15:31:41,222 | INFO     | chi2: 13.125356325233762
[2025-11-24 10:32:29] 2025-11-24 15:31:41,222 | INFO     | current chi2=13.125356325233762 (change=12.254929611147473 %)
[2025-11-24 10:32:29] 2025-11-24 15:31:41,222 | INFO     | left removable region: 10
[2025-11-24 10:32:29] 2025-11-24 15:31:41,224 | INFO     | sum of square deviations: 979127929984.4296
[2025-11-24 10:32:29] 2025-11-24 15:31:41,360 | INFO     | sum of deviations: 5240096130126.364
[2025-11-24 10:32:29] 2025-11-24 15:31:41,372 | INFO     | mean x: 1763953166.366053
[2025-11-24 10:32:29] 2025-11-24 15:31:41,372 | INFO     | mean y: 3316684.8466257667
[2025-11-24 10:32:29] 2025-11-24 15:31:41,373 | INFO     | intersect: -9437006563.766956
[2025-11-24 10:32:29] 2025-11-24 15:31:41,374 | INFO     | chi2: 9.114871969143032
[2025-11-24 10:32:29] 2025-11-24 15:31:41,375 | INFO     | current memory leak: 5.35 B/s (using 1467 data points, chi2=9.11)
[2025-11-24 10:32:29] 2025-11-24 15:31:41,376 | INFO     | could have reported an average CPU frequency of 2910 MHz (53 samples)
[2025-11-24 10:32:29] 2025-11-24 15:31:41,376 | INFO     | ..............................
[2025-11-24 10:32:29] 2025-11-24 15:31:41,377 | INFO     | . Timing measurements:
[2025-11-24 10:32:29] 2025-11-24 15:31:41,377 | INFO     | . get job = 0 s
[2025-11-24 10:32:29] 2025-11-24 15:31:41,377 | INFO     | . initial setup = 2 s
[2025-11-24 10:32:29] 2025-11-24 15:31:41,377 | INFO     | . payload setup = 6 s
[2025-11-24 10:32:29] 2025-11-24 15:31:41,377 | INFO     | . stage-in = 0 s
[2025-11-24 10:32:29] 2025-11-24 15:31:41,389 | INFO     | . payload execution = 90423 s
[2025-11-24 10:32:29] 2025-11-24 15:31:41,389 | INFO     | . stage-out = 7 s
[2025-11-24 10:32:29] 2025-11-24 15:31:41,389 | INFO     | . log creation = 2 s
[2025-11-24 10:32:29] 2025-11-24 15:31:41,389 | INFO     | ..............................
[2025-11-24 10:32:29] 2025-11-24 15:31:41,878 | INFO     | time since job start (90491s) is within the limit (172800.0s)
[2025-11-24 10:32:29] 2025-11-24 15:31:42,147 | INFO     | 
[2025-11-24 10:32:29] 2025-11-24 15:31:42,147 | INFO     | job summary report
[2025-11-24 10:32:29] 2025-11-24 15:31:42,147 | INFO     | --------------------------------------------------
[2025-11-24 10:32:29] 2025-11-24 15:31:42,147 | INFO     | PanDA job id: 6895329033
[2025-11-24 10:32:29] 2025-11-24 15:31:42,147 | INFO     | task id: 47556137
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | errors: (none)
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | pilot state: finished 
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | transexitcode: 0
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | exeerrorcode: 0
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | exeerrordiag: 
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | exitcode: 0
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | exitmsg: OK
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | cpuconsumptiontime: 251649 s
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | nevents: 1000
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | neventsw: 0
[2025-11-24 10:32:29] 2025-11-24 15:31:42,148 | INFO     | pid: 1330602
[2025-11-24 10:32:29] 2025-11-24 15:31:42,149 | INFO     | pgrp: 1330602
[2025-11-24 10:32:29] 2025-11-24 15:31:42,149 | INFO     | corecount: 10
[2025-11-24 10:32:29] 2025-11-24 15:31:42,149 | INFO     | event service: False
[2025-11-24 10:32:29] 2025-11-24 15:31:42,149 | INFO     | sizes: {0: 2298756, 7: 2299018, 11: 2299046, 90434: 2364881, 90443: 2374666, 90445: 2374722, 90475: 2375192}
[2025-11-24 10:32:29] 2025-11-24 15:31:42,149 | INFO     | --------------------------------------------------
[2025-11-24 10:32:29] 2025-11-24 15:31:42,149 | INFO     | 
[2025-11-24 10:32:29] 2025-11-24 15:31:42,149 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 10:32:29] 2025-11-24 15:31:42,208 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,209 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,210 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 10:32:29] 2025-11-24 15:31:42,211 | INFO     | job 6895329033 has completed (purged errors)
[2025-11-24 10:32:29] 2025-11-24 15:31:42,211 | INFO     | overall cleanup function is called
[2025-11-24 10:32:29] 2025-11-24 15:31:43,241 | INFO     | --- collectZombieJob: --- 10, [1330602]
[2025-11-24 10:32:29] 2025-11-24 15:31:43,241 | INFO     | zombie collector waiting for pid 1330602
[2025-11-24 10:32:29] 2025-11-24 15:31:43,241 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 10:32:29] 2025-11-24 15:31:43,241 | INFO     | collected zombie processes
[2025-11-24 10:32:29] 2025-11-24 15:31:43,241 | INFO     | will attempt to kill all subprocesses of pid=1330602
[2025-11-24 10:32:29] 2025-11-24 15:31:44,357 | INFO     | process IDs to be killed: [1330602] (in reverse order)
[2025-11-24 10:32:29] 2025-11-24 15:31:44,778 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 10:32:29] 2025-11-24 15:31:44,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 10:32:29] 2025-11-24 15:31:44,811 | INFO     | did not find any defunct processes belonging to 1330602
[2025-11-24 10:32:29] 2025-11-24 15:31:44,859 | INFO     | did not find any defunct processes belonging to 1330602
[2025-11-24 10:32:29] 2025-11-24 15:31:44,860 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 10:32:29] 2025-11-24 15:31:44,860 | INFO     | ready for new job
[2025-11-24 10:32:29] 2025-11-24 15:31:44,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 10:32:29] 2025-11-24 15:31:44,874 | INFO     | ***************************************
[2025-11-24 10:32:29] 2025-11-24 15:31:44,874 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 10:32:29] 2025-11-24 15:31:44,874 | INFO     | ***************************************
[2025-11-24 10:32:29] 2025-11-24 15:31:44,874 | INFO     | 
[2025-11-24 10:32:29] 2025-11-24 15:31:44,886 | INFO     | architecture information:
[2025-11-24 10:32:29] 2025-11-24 15:31:44,890 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:32:29] 2025-11-24 15:31:44,948 | INFO     | cat /etc/os-release:
[2025-11-24 10:32:29] NAME="CentOS Linux"
[2025-11-24 10:32:29] VERSION="7 (Core)"
[2025-11-24 10:32:29] ID="centos"
[2025-11-24 10:32:29] ID_LIKE="rhel fedora"
[2025-11-24 10:32:29] VERSION_ID="7"
[2025-11-24 10:32:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:32:29] ANSI_COLOR="0;31"
[2025-11-24 10:32:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:32:29] HOME_URL="https://www.centos.org/"
[2025-11-24 10:32:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:32:29] 
[2025-11-24 10:32:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:32:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:32:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:32:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:32:29] 
[2025-11-24 10:32:29] 2025-11-24 15:31:44,949 | INFO     | ***************************************
[2025-11-24 10:32:29] 2025-11-24 15:31:45,460 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 10:32:29] 2025-11-24 15:31:45,574 | INFO     | sufficient remaining disk space (68031610880 B)
[2025-11-24 10:32:29] 2025-11-24 15:31:45,575 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:32:29] 2025-11-24 15:31:45,575 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:32:29] 2025-11-24 15:31:45,575 | INFO     | update_server=False
[2025-11-24 10:32:29] 2025-11-24 15:31:45,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:32:29] 2025-11-24 15:31:45,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:32:29] 2025-11-24 15:31:45,576 | INFO     | aborting loop
[2025-11-24 10:32:29] 2025-11-24 15:31:45,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:32:29] 2025-11-24 15:31:46,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:32:29] 2025-11-24 15:31:46,424 | INFO     | all data control threads have been joined
[2025-11-24 10:32:29] 2025-11-24 15:31:46,514 | INFO     | all job control threads have been joined
[2025-11-24 10:32:29] 2025-11-24 15:31:46,583 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:46,584 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:46,838 | INFO     | all payload control threads have been joined
[2025-11-24 10:32:29] 2025-11-24 15:31:46,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:32:29] 2025-11-24 15:31:47,096 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,177 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,184 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,395 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,429 | INFO     | [data] control thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,520 | INFO     | [job] control thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,522 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,601 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,844 | INFO     | [payload] control thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:47,928 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:48,012 | INFO     | [job] validate thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:48,022 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:48,296 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:31:49,587 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:32:29] 2025-11-24 15:32:15,641 | INFO     | PID=1323730 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 10:32:29] 2025-11-24 15:32:15,642 | INFO     | .. there are 27 such processes running
[2025-11-24 10:32:29] 2025-11-24 15:32:15,642 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:32:29] 2025-11-24 15:32:15,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:32:29] 2025-11-24 15:32:15,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:32:29] 2025-11-24 15:32:21,547 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:32:29] 2025-11-24 15:32:22,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140010263570240)>', '<ExcThread(monitor, started 140009910802176)>']
[2025-11-24 10:32:29] 2025-11-24 15:32:22,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:32:29] 2025-11-24 15:32:22,700 | INFO     | [monitor] control thread has ended
[2025-11-24 10:32:29] 2025-11-24 15:32:27,378 | INFO     | all workflow threads have been joined
[2025-11-24 10:32:29] 2025-11-24 15:32:27,378 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:32:29] 2025-11-24 15:32:27,379 | INFO     | traces error code: 0
[2025-11-24 10:32:29] 2025-11-24 15:32:27,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:32:29] 2025-11-24 15:32:27,758 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:32:29] 2025-11-24 15:32:27,804 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:32:29] 2025-11-24 15:32:27,854 [wrapper] pilotpid: 1323730
[2025-11-24 10:32:29] 2025-11-24 15:32:27,890 [wrapper] Pilot exit status: 0
[2025-11-24 10:32:29] 2025-11-24 15:32:28,172 [wrapper] pandaids: 6895329033
[2025-11-24 10:32:29] 2025-11-24 15:32:28,496 [wrapper] cleanup supervisor_pilot 1461181 1323731
[2025-11-24 10:32:29] 2025-11-24 15:32:28,507 [wrapper] Test setup, not cleaning
[2025-11-24 10:32:29] 2025-11-24 15:32:28,533 [wrapper] apfmon messages muted
[2025-11-24 10:32:29] 2025-11-24 15:32:28,558 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:32:29] 2025-11-24 15:32:28,580 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:32:29]  *** Error codes and diagnostics ***
[2025-11-24 10:32:29]     "exeErrorCode": 0,
[2025-11-24 10:32:29]     "exeErrorDiag": "",
[2025-11-24 10:32:29]     "pilotErrorCode": 0,
[2025-11-24 10:32:29]     "pilotErrorDiag": "",
[2025-11-24 10:32:29]  *** Listing of results directory ***
[2025-11-24 10:32:29] total 1332984
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:30 pilot3.tar.gz
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:33 queuedata.json
[2025-11-24 10:32:29] -rwx------. 1 boincer umatlas     36292 Nov 21 13:33 runpilot2-wrapper.sh
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas       100 Nov 23 09:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:32:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 09:23 run_atlas
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas       105 Nov 23 09:23 job.xml
[2025-11-24 10:32:29] -rw-r--r--. 2 boincer umatlas 408292042 Nov 23 09:23 EVNT.47483658._000102.pool.root.1
[2025-11-24 10:32:29] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 09:23 input.tar.gz
[2025-11-24 10:32:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 09:23 shared
[2025-11-24 10:32:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 09:23 start_atlas.sh
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas         0 Nov 23 09:23 boinc_lockfile
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 09:23 pandaJob.out
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas        57 Nov 23 09:23 setup.sh.local
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas    989785 Nov 23 09:23 agis_schedconf.cvmfs.json
[2025-11-24 10:32:29] drwx------. 5 boincer umatlas      4096 Nov 23 09:23 pilot3
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas       533 Nov 24 10:00 boinc_task_state.xml
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas      6840 Nov 24 10:28 init_data.xml
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas 924934648 Nov 24 10:29 HITS.47556137._001013.pool.root.1
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas      1058 Nov 24 10:30 memory_monitor_summary.json
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas   1516227 Nov 24 10:31 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas   2680031 Nov 24 10:31 log.47556137._001013.job.log.tgz.1
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas        95 Nov 24 10:31 pilot_heartbeat.json
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas      8615 Nov 24 10:31 heartbeat.json
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 10:32 boinc_mmap_file
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas        29 Nov 24 10:32 wrapper_checkpoint.txt
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas      4824 Nov 24 10:32 pilotlog.txt
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas  11234106 Nov 24 10:32 log.47556137._001013.job.log.1
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas       353 Nov 24 10:32 output.list
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas       620 Nov 24 10:32 runtime_log
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas  13936640 Nov 24 10:32 result.tar.gz
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas       660 Nov 24 10:32 tjMODmx7kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIdJKDmgullUn.diag
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas      9345 Nov 24 10:32 runtime_log.err
[2025-11-24 10:32:29] -rw-r--r--. 1 boincer umatlas     21783 Nov 24 10:32 stderr.txt
[2025-11-24 10:32:29] HITS file was successfully produced:
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas 924934648 Nov 24 10:29 shared/HITS.pool.root.1
[2025-11-24 10:32:29]  *** Contents of shared directory: ***
[2025-11-24 10:32:29] total 1316196
[2025-11-24 10:32:29] -rw-r--r--. 2 boincer umatlas 408292042 Nov 23 09:23 ATLAS.root_0
[2025-11-24 10:32:29] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 09:23 input.tar.gz
[2025-11-24 10:32:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 09:23 start_atlas.sh
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas 924934648 Nov 24 10:29 HITS.pool.root.1
[2025-11-24 10:32:29] -rw-------. 1 boincer umatlas  13936640 Nov 24 10:32 result.tar.gz
10:32:30 (1319970): run_atlas exited; CPU time 253083.424282
10:32:30 (1319970): called boinc_finish(0)

</stderr_txt>
]]>

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