Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:26:00 (3451928): wrapper (7.7.26015): starting
00:26:00 (3451928): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:26:00] Arguments: --nthreads 9
[2025-11-23 00:26:00] Threads: 9
[2025-11-23 00:26:00] Checking for CVMFS
[2025-11-23 00:26:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:26:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:26:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:26:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:26:23] 2.13.3.0 9955 25262 310552 153198 0 140 31738478 32935936 26110 16776704 0 153638231 99.801 79185632 33287 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:26:23] CVMFS is ok
[2025-11-23 00:26:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:26:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:26:23] Further information can be found at the LHC@home message board.
[2025-11-23 00:26:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:26:23] Checking for apptainer binary...
[2025-11-23 00:26:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:26:23] Running /usr/bin/apptainer --version
[2025-11-23 00:26:23] apptainer version 1.4.4-1.el9
[2025-11-23 00:26:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:26:24] c-5-1.aglt2.org
[2025-11-23 00:26:24] apptainer works
[2025-11-23 00:26:24] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:26:24] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:26:24] Starting ATLAS job with PandaID=6894287726
[2025-11-23 00:26:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 07:57:58]  *** The last 200 lines of the pilot log: ***
[2025-11-24 07:57:58] 2025-11-24 12:56:46,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:57:58] 2025-11-24 12:56:47,388 | INFO     | time since job start (113372s) is within the limit (172800.0s)
[2025-11-24 07:57:58] 2025-11-24 12:56:48,943 | INFO     | monitor loop #6219: job 0:6894287726 is in state 'finished'
[2025-11-24 07:57:58] 2025-11-24 12:56:48,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:57:58] 2025-11-24 12:56:49,435 | INFO     | time since job start (113374s) is within the limit (172800.0s)
[2025-11-24 07:57:58] 2025-11-24 12:56:51,463 | INFO     | time since job start (113376s) is within the limit (172800.0s)
[2025-11-24 07:57:58] 2025-11-24 12:56:51,463 | INFO     | 113382s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 07:57:58] 2025-11-24 12:56:51,476 | INFO     | monitor loop #6220: job 0:6894287726 is in state 'finished'
[2025-11-24 07:57:58] 2025-11-24 12:56:51,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:57:58] 2025-11-24 12:56:53,494 | INFO     | time since job start (113378s) is within the limit (172800.0s)
[2025-11-24 07:57:58] 2025-11-24 12:56:54,004 | INFO     | monitor loop #6221: job 0:6894287726 is in state 'finished'
[2025-11-24 07:57:58] 2025-11-24 12:56:54,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:57:58] 2025-11-24 12:56:54,699 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 07:57:58] 2025-11-24 12:56:54,718 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0381249999996
[2025-11-24 07:57:58] 2025-11-24 12:56:54,912 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894287726/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 07:57:58] 2025-11-24 12:56:54,913 | INFO     | extracted standard info from prmon json
[2025-11-24 07:57:58] 2025-11-24 12:56:54,914 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 07:57:58] 2025-11-24 12:56:54,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 07:57:58] 2025-11-24 12:56:55,041 | INFO     | fitting pss+swap vs Time
[2025-11-24 07:57:58] 2025-11-24 12:56:55,078 | INFO     | sum of square deviations: 1985720083061.8052
[2025-11-24 07:57:58] 2025-11-24 12:56:55,285 | INFO     | sum of deviations: 6552680815990.07
[2025-11-24 07:57:58] 2025-11-24 12:56:55,285 | INFO     | mean x: 1763932335.0414648
[2025-11-24 07:57:58] 2025-11-24 12:56:55,285 | INFO     | mean y: 3127304.9472267097
[2025-11-24 07:57:58] 2025-11-24 12:56:55,285 | INFO     | intersect: -5817675773.555465
[2025-11-24 07:57:58] 2025-11-24 12:56:55,288 | INFO     | chi2: 16.41868943089514
[2025-11-24 07:57:58] 2025-11-24 12:56:55,290 | INFO     | sum of square deviations: 1969725356890.4302
[2025-11-24 07:57:58] 2025-11-24 12:56:55,561 | INFO     | sum of deviations: 7220808179618.126
[2025-11-24 07:57:58] 2025-11-24 12:56:55,561 | INFO     | mean x: 1763932182.549676
[2025-11-24 07:57:58] 2025-11-24 12:56:55,561 | INFO     | mean y: 3133674.042116631
[2025-11-24 07:57:58] 2025-11-24 12:56:55,561 | INFO     | intersect: -6463258144.233529
[2025-11-24 07:57:58] 2025-11-24 12:56:55,567 | INFO     | chi2: 13.276080368145717
[2025-11-24 07:57:58] 2025-11-24 12:56:55,567 | INFO     | current chi2=13.276080368145717 (change=19.14043795015671 %)
[2025-11-24 07:57:58] 2025-11-24 12:56:55,567 | INFO     | right removable region: 1851
[2025-11-24 07:57:58] 2025-11-24 12:56:55,574 | INFO     | sum of square deviations: 1969721911610.4307
[2025-11-24 07:57:58] 2025-11-24 12:56:56,359 | INFO     | sum of deviations: 5825265870766.88
[2025-11-24 07:57:58] 2025-11-24 12:56:56,359 | INFO     | mean x: 1763932487.549676
[2025-11-24 07:57:58] 2025-11-24 12:56:56,359 | INFO     | mean y: 3134237.968682505
[2025-11-24 07:57:58] 2025-11-24 12:56:56,359 | INFO     | intersect: -5213528915.084723
[2025-11-24 07:57:58] 2025-11-24 12:56:56,379 | INFO     | chi2: 13.11782909815122
[2025-11-24 07:57:58] 2025-11-24 12:56:56,379 | INFO     | current chi2=13.11782909815122 (change=20.10428631735169 %)
[2025-11-24 07:57:58] 2025-11-24 12:56:56,379 | INFO     | left removable region: 10
[2025-11-24 07:57:58] 2025-11-24 12:56:56,381 | INFO     | sum of square deviations: 1934834082645.8171
[2025-11-24 07:57:58] 2025-11-24 12:56:56,620 | INFO     | monitor loop #6222: job 0:6894287726 is in state 'finished'
[2025-11-24 07:57:58] 2025-11-24 12:56:56,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:57:58] 2025-11-24 12:56:56,797 | INFO     | sum of deviations: 6264416051732.006
[2025-11-24 07:57:58] 2025-11-24 12:56:56,797 | INFO     | mean x: 1763932457.0624661
[2025-11-24 07:57:58] 2025-11-24 12:56:56,797 | INFO     | mean y: 3145291.165127648
[2025-11-24 07:57:58] 2025-11-24 12:56:56,797 | INFO     | intersect: -5707942236.858307
[2025-11-24 07:57:58] 2025-11-24 12:56:56,802 | INFO     | chi2: 8.606036998185377
[2025-11-24 07:57:58] 2025-11-24 12:56:56,802 | INFO     | current memory leak: 3.24 B/s (using 1841 data points, chi2=8.61)
[2025-11-24 07:57:58] 2025-11-24 12:56:56,804 | INFO     | could have reported an average CPU frequency of 2600 MHz (65 samples)
[2025-11-24 07:57:58] 2025-11-24 12:56:56,804 | INFO     | ..............................
[2025-11-24 07:57:58] 2025-11-24 12:56:56,804 | INFO     | . Timing measurements:
[2025-11-24 07:57:58] 2025-11-24 12:56:56,808 | INFO     | . get job = 0 s
[2025-11-24 07:57:58] 2025-11-24 12:56:56,809 | INFO     | . initial setup = 5 s
[2025-11-24 07:57:58] 2025-11-24 12:56:56,809 | INFO     | . payload setup = 26 s
[2025-11-24 07:57:58] 2025-11-24 12:56:56,809 | INFO     | . stage-in = 0 s
[2025-11-24 07:57:58] 2025-11-24 12:56:56,809 | INFO     | . payload execution = 113258 s
[2025-11-24 07:57:58] 2025-11-24 12:56:56,809 | INFO     | . stage-out = 6 s
[2025-11-24 07:57:58] 2025-11-24 12:56:56,809 | INFO     | . log creation = 1 s
[2025-11-24 07:57:58] 2025-11-24 12:56:56,809 | INFO     | ..............................
[2025-11-24 07:57:58] 2025-11-24 12:56:57,042 | INFO     | 
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | job summary report
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | --------------------------------------------------
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | PanDA job id: 6894287726
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | task id: 47533967
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | errors: (none)
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | pilot state: finished 
[2025-11-24 07:57:58] 2025-11-24 12:56:57,043 | INFO     | transexitcode: 0
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | exeerrorcode: 0
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | exeerrordiag: 
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | exitcode: 0
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | exitmsg: OK
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | cpuconsumptiontime: 307350 s
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | nevents: 1000
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | neventsw: 0
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | pid: 3464833
[2025-11-24 07:57:58] 2025-11-24 12:56:57,044 | INFO     | pgrp: 3464833
[2025-11-24 07:57:58] 2025-11-24 12:56:57,045 | INFO     | corecount: 9
[2025-11-24 07:57:58] 2025-11-24 12:56:57,045 | INFO     | event service: False
[2025-11-24 07:57:58] 2025-11-24 12:56:57,045 | INFO     | sizes: {0: 2297978, 1: 2298663, 2: 2298862, 3: 2298862, 13: 2298890, 24: 2299208, 25: 2299364, 113290: 2374676, 113291: 2374675, 113299: 2384572, 113340: 2384858}
[2025-11-24 07:57:58] 2025-11-24 12:56:57,045 | INFO     | --------------------------------------------------
[2025-11-24 07:57:58] 2025-11-24 12:56:57,045 | INFO     | 
[2025-11-24 07:57:58] 2025-11-24 12:56:57,045 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 07:57:58] 2025-11-24 12:56:57,132 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,132 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,133 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,134 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 07:57:58] 2025-11-24 12:56:57,135 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,135 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 07:57:58] 2025-11-24 12:56:57,135 | INFO     | job 6894287726 has completed (purged errors)
[2025-11-24 07:57:58] 2025-11-24 12:56:57,135 | INFO     | overall cleanup function is called
[2025-11-24 07:57:58] 2025-11-24 12:56:57,339 | INFO     | PID=3457595 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:57:58] 2025-11-24 12:56:57,339 | INFO     | .. there are 43 such processes running
[2025-11-24 07:57:58] 2025-11-24 12:56:58,202 | INFO     | --- collectZombieJob: --- 10, [3464833]
[2025-11-24 07:57:58] 2025-11-24 12:56:58,202 | INFO     | zombie collector waiting for pid 3464833
[2025-11-24 07:57:58] 2025-11-24 12:56:58,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 07:57:58] 2025-11-24 12:56:58,202 | INFO     | collected zombie processes
[2025-11-24 07:57:58] 2025-11-24 12:56:58,202 | INFO     | will attempt to kill all subprocesses of pid=3464833
[2025-11-24 07:57:58] 2025-11-24 12:56:59,231 | INFO     | process IDs to be killed: [3464833] (in reverse order)
[2025-11-24 07:57:58] 2025-11-24 12:56:59,798 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 07:57:58] 2025-11-24 12:56:59,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 07:57:58] 2025-11-24 12:56:59,820 | INFO     | did not find any defunct processes belonging to 3464833
[2025-11-24 07:57:58] 2025-11-24 12:56:59,839 | INFO     | did not find any defunct processes belonging to 3464833
[2025-11-24 07:57:58] 2025-11-24 12:56:59,888 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 07:57:58] 2025-11-24 12:56:59,888 | INFO     | ready for new job
[2025-11-24 07:57:58] 2025-11-24 12:56:59,888 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 07:57:58] 2025-11-24 12:56:59,895 | INFO     | ***************************************
[2025-11-24 07:57:58] 2025-11-24 12:56:59,895 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 07:57:58] 2025-11-24 12:56:59,896 | INFO     | ***************************************
[2025-11-24 07:57:58] 2025-11-24 12:56:59,896 | INFO     | 
[2025-11-24 07:57:58] 2025-11-24 12:56:59,898 | INFO     | architecture information:
[2025-11-24 07:57:58] 2025-11-24 12:56:59,898 | INFO     | executing command: cat /etc/os-release
[2025-11-24 07:57:58] 2025-11-24 12:56:59,962 | INFO     | cat /etc/os-release:
[2025-11-24 07:57:58] NAME="CentOS Linux"
[2025-11-24 07:57:58] VERSION="7 (Core)"
[2025-11-24 07:57:58] ID="centos"
[2025-11-24 07:57:58] ID_LIKE="rhel fedora"
[2025-11-24 07:57:58] VERSION_ID="7"
[2025-11-24 07:57:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 07:57:58] ANSI_COLOR="0;31"
[2025-11-24 07:57:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 07:57:58] HOME_URL="https://www.centos.org/"
[2025-11-24 07:57:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 07:57:58] 
[2025-11-24 07:57:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 07:57:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 07:57:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 07:57:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 07:57:58] 
[2025-11-24 07:57:58] 2025-11-24 12:56:59,963 | INFO     | ***************************************
[2025-11-24 07:57:58] 2025-11-24 12:57:00,466 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 07:57:58] 2025-11-24 12:57:00,505 | INFO     | sufficient remaining disk space (71131201536 B)
[2025-11-24 07:57:58] 2025-11-24 12:57:00,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 07:57:58] 2025-11-24 12:57:00,506 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 07:57:58] 2025-11-24 12:57:00,506 | INFO     | update_server=False
[2025-11-24 07:57:58] 2025-11-24 12:57:00,506 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 07:57:58] 2025-11-24 12:57:00,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:57:58] 2025-11-24 12:57:00,506 | INFO     | aborting loop
[2025-11-24 07:57:58] 2025-11-24 12:57:00,508 | INFO     | all data control threads have been joined
[2025-11-24 07:57:58] 2025-11-24 12:57:01,261 | INFO     | all payload control threads have been joined
[2025-11-24 07:57:58] 2025-11-24 12:57:01,321 | INFO     | all job control threads have been joined
[2025-11-24 07:57:58] 2025-11-24 12:57:01,512 | INFO     | [job] retrieve thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:01,514 | INFO     | [data] control thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:01,516 | INFO     | [job] job monitor thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:01,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 07:57:58] 2025-11-24 12:57:02,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:57:58] 2025-11-24 12:57:02,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,174 | INFO     | [data] copytool_in thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,267 | INFO     | [payload] control thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,277 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,327 | INFO     | [job] control thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,450 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,671 | INFO     | [payload] validate_post thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,808 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,898 | INFO     | [payload] failed_post thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:02,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 07:57:58] 2025-11-24 12:57:02,981 | INFO     | [job] validate thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:03,084 | INFO     | [job] queue monitor thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:03,983 | INFO     | [data] copytool_out thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:06,931 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 07:57:58] 2025-11-24 12:57:26,221 [wrapper] supervise_pilot (15 min periods counter: 127)
[2025-11-24 07:57:58] 2025-11-24 12:57:30,207 | INFO     | PID=3457595 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:57:58] 2025-11-24 12:57:30,208 | INFO     | .. there are 43 such processes running
[2025-11-24 07:57:58] 2025-11-24 12:57:30,209 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 07:57:58] 2025-11-24 12:57:30,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 07:57:58] 2025-11-24 12:57:30,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 07:57:58] 2025-11-24 12:57:50,806 | INFO     | [monitor] cgroup control has ended
[2025-11-24 07:57:58] 2025-11-24 12:57:52,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139750506014528)>', '<ExcThread(monitor, started 139750157567744)>']
[2025-11-24 07:57:58] 2025-11-24 12:57:53,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 07:57:58] 2025-11-24 12:57:53,396 | INFO     | [monitor] control thread has ended
[2025-11-24 07:57:58] 2025-11-24 12:57:57,616 | INFO     | all workflow threads have been joined
[2025-11-24 07:57:58] 2025-11-24 12:57:57,616 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 07:57:58] 2025-11-24 12:57:57,616 | INFO     | traces error code: 0
[2025-11-24 07:57:58] 2025-11-24 12:57:57,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 07:57:58] 2025-11-24 12:57:57,999 [wrapper] ==== pilot stdout END ====
[2025-11-24 07:57:58] 2025-11-24 12:57:58,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 07:57:58] 2025-11-24 12:57:58,040 [wrapper] pilotpid: 3457595
[2025-11-24 07:57:58] 2025-11-24 12:57:58,055 [wrapper] Pilot exit status: 0
[2025-11-24 07:57:58] 2025-11-24 12:57:58,182 [wrapper] pandaids: 6894287726
[2025-11-24 07:57:58] 2025-11-24 12:57:58,292 [wrapper] cleanup supervisor_pilot 1604832 3457596
[2025-11-24 07:57:58] 2025-11-24 12:57:58,330 [wrapper] Test setup, not cleaning
[2025-11-24 07:57:58] 2025-11-24 12:57:58,333 [wrapper] apfmon messages muted
[2025-11-24 07:57:58] 2025-11-24 12:57:58,336 [wrapper] ==== wrapper stdout END ====
[2025-11-24 07:57:58] 2025-11-24 12:57:58,339 [wrapper] ==== wrapper stderr END ====
[2025-11-24 07:57:58]  *** Error codes and diagnostics ***
[2025-11-24 07:57:58]     "exeErrorCode": 0,
[2025-11-24 07:57:58]     "exeErrorDiag": "",
[2025-11-24 07:57:58]     "pilotErrorCode": 0,
[2025-11-24 07:57:58]     "pilotErrorDiag": "",
[2025-11-24 07:57:58]  *** Listing of results directory ***
[2025-11-24 07:57:59] total 1341880
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:50 pilot3.tar.gz
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:00 queuedata.json
[2025-11-24 07:57:59] -rwx------. 1 boincer umatlas     36292 Nov 21 06:01 runpilot2-wrapper.sh
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 07:57:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:25 run_atlas
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:25 job.xml
[2025-11-24 07:57:59] -rw-r--r--. 2 boincer umatlas 412437325 Nov 23 00:26 EVNT.47493127._002386.pool.root.1
[2025-11-24 07:57:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:26 start_atlas.sh
[2025-11-24 07:57:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:26 shared
[2025-11-24 07:57:59] -rw-r--r--. 2 boincer umatlas    590107 Nov 23 00:26 input.tar.gz
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:26 boinc_lockfile
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:26 pandaJob.out
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas        57 Nov 23 00:26 setup.sh.local
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas    989784 Nov 23 00:27 agis_schedconf.cvmfs.json
[2025-11-24 07:57:59] drwx------. 5 boincer umatlas      4096 Nov 23 00:27 pilot3
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas       534 Nov 24 07:28 boinc_task_state.xml
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas 925068384 Nov 24 07:54 HITS.47533967._003576.pool.root.1
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas      1069 Nov 24 07:56 memory_monitor_summary.json
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas   1516227 Nov 24 07:56 agis_ddmendpoints.agis.ALL.json
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas   2812750 Nov 24 07:56 log.47533967._003576.job.log.tgz.1
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas      8657 Nov 24 07:56 heartbeat.json
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas      6661 Nov 24 07:57 init_data.xml
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas        95 Nov 24 07:57 pilot_heartbeat.json
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 07:57 boinc_mmap_file
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas        29 Nov 24 07:57 wrapper_checkpoint.txt
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas      4824 Nov 24 07:57 pilotlog.txt
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas  13515819 Nov 24 07:57 log.47533967._003576.job.log.1
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas       353 Nov 24 07:57 output.list
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas       620 Nov 24 07:57 runtime_log
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas  16353280 Nov 24 07:57 result.tar.gz
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas      9329 Nov 24 07:57 runtime_log.err
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas       664 Nov 24 07:57 33XNDmn4dg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3IJKDmpfNuJn.diag
[2025-11-24 07:57:59] -rw-r--r--. 1 boincer umatlas     21891 Nov 24 07:57 stderr.txt
[2025-11-24 07:57:59] HITS file was successfully produced:
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas 925068384 Nov 24 07:54 shared/HITS.pool.root.1
[2025-11-24 07:57:59]  *** Contents of shared directory: ***
[2025-11-24 07:57:59] total 1322736
[2025-11-24 07:57:59] -rw-r--r--. 2 boincer umatlas 412437325 Nov 23 00:26 ATLAS.root_0
[2025-11-24 07:57:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:26 start_atlas.sh
[2025-11-24 07:57:59] -rw-r--r--. 2 boincer umatlas    590107 Nov 23 00:26 input.tar.gz
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas 925068384 Nov 24 07:54 HITS.pool.root.1
[2025-11-24 07:57:59] -rw-------. 1 boincer umatlas  16353280 Nov 24 07:57 result.tar.gz
07:58:00 (3451928): run_atlas exited; CPU time 311206.264731
07:58:00 (3451928): called boinc_finish(0)

</stderr_txt>
]]>

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