Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:27 (784143): wrapper (7.7.26015): starting
00:01:27 (784143): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:01:27] Arguments: --nthreads 9
[2025-11-22 00:01:27] Threads: 9
[2025-11-22 00:01:27] Checking for CVMFS
[2025-11-22 00:01:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:01:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:01:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:01:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:01:28] 2.13.3.0 11235 22148 276908 153159 2 773 32065550 32935937 40015 16776704 0 121178309 99.496 146094892 34907 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:01:28] CVMFS is ok
[2025-11-22 00:01:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:01:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:01:28] Further information can be found at the LHC@home message board.
[2025-11-22 00:01:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:01:28] Checking for apptainer binary...
[2025-11-22 00:01:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:01:28] Running /usr/bin/apptainer --version
[2025-11-22 00:01:28] apptainer version 1.4.4-1.el9
[2025-11-22 00:01:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:01:28] c7-2-37.aglt2.org
[2025-11-22 00:01:28] apptainer works
[2025-11-22 00:01:29] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:01:29] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:01:29] Starting ATLAS job with PandaID=6893850472
[2025-11-22 00:01:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:56:27]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:56:28] 2025-11-22 14:54:48,277 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 13:56:28] 2025-11-22 14:54:48,358 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3148.1881875000013
[2025-11-22 13:56:28] 2025-11-22 14:54:48,425 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6893850472/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:56:28] 2025-11-22 14:54:48,445 | INFO     | extracted standard info from prmon json
[2025-11-22 13:56:28] 2025-11-22 14:54:48,446 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:56:28] 2025-11-22 14:54:48,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:56:28] 2025-11-22 14:54:48,481 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:56:28] 2025-11-22 14:54:48,493 | INFO     | sum of square deviations: 61126076591.78695
[2025-11-22 13:56:28] 2025-11-22 14:54:48,543 | INFO     | sum of deviations: 953874970302.5657
[2025-11-22 13:56:28] 2025-11-22 14:54:48,543 | INFO     | mean x: 1763805495.718213
[2025-11-22 13:56:28] 2025-11-22 14:54:48,543 | INFO     | mean y: 2983112.503436426
[2025-11-22 13:56:28] 2025-11-22 14:54:48,543 | INFO     | intersect: -27521275087.20851
[2025-11-22 13:56:28] 2025-11-22 14:54:48,548 | INFO     | chi2: 9.851197369755964
[2025-11-22 13:56:28] 2025-11-22 14:54:48,549 | INFO     | sum of square deviations: 59564300751.80243
[2025-11-22 13:56:28] 2025-11-22 14:54:48,588 | INFO     | sum of deviations: 1163874427367.4949
[2025-11-22 13:56:28] 2025-11-22 14:54:48,588 | INFO     | mean x: 1763805343.2287695
[2025-11-22 13:56:28] 2025-11-22 14:54:48,589 | INFO     | mean y: 3003626.1629116116
[2025-11-22 13:56:28] 2025-11-22 14:54:48,589 | INFO     | intersect: -34461397163.02947
[2025-11-22 13:56:28] 2025-11-22 14:54:48,589 | INFO     | chi2: 6.217513587846122
[2025-11-22 13:56:28] 2025-11-22 14:54:48,589 | INFO     | current chi2=6.217513587846122 (change=36.8857068386993 %)
[2025-11-22 13:56:28] 2025-11-22 14:54:48,590 | INFO     | sum of square deviations: 58029362624.187096
[2025-11-22 13:56:28] 2025-11-22 14:54:48,611 | INFO     | sum of deviations: 1369169900344.6152
[2025-11-22 13:56:28] 2025-11-22 14:54:48,611 | INFO     | mean x: 1763805190.7395105
[2025-11-22 13:56:28] 2025-11-22 14:54:48,612 | INFO     | mean y: 3024003.561188811
[2025-11-22 13:56:28] 2025-11-22 14:54:48,612 | INFO     | intersect: -41612959147.45072
[2025-11-22 13:56:28] 2025-11-22 14:54:48,612 | INFO     | chi2: 2.7331271104205745
[2025-11-22 13:56:28] 2025-11-22 14:54:48,612 | INFO     | current chi2=2.7331271104205745 (change=56.04147748445231 %)
[2025-11-22 13:56:28] 2025-11-22 14:54:48,613 | INFO     | sum of square deviations: 56520890328.41298
[2025-11-22 13:56:28] 2025-11-22 14:54:48,634 | INFO     | sum of deviations: 1371519533636.4062
[2025-11-22 13:56:28] 2025-11-22 14:54:48,634 | INFO     | mean x: 1763805038.2433863
[2025-11-22 13:56:28] 2025-11-22 14:54:48,635 | INFO     | mean y: 3024223.975308642
[2025-11-22 13:56:28] 2025-11-22 14:54:48,635 | INFO     | intersect: -42796957330.11988
[2025-11-22 13:56:28] 2025-11-22 14:54:48,635 | INFO     | chi2: 2.5720184354307976
[2025-11-22 13:56:28] 2025-11-22 14:54:48,635 | INFO     | current chi2=2.5720184354307976 (change=5.894664553855511 %)
[2025-11-22 13:56:28] 2025-11-22 14:54:48,635 | INFO     | right removable region: 566
[2025-11-22 13:56:28] 2025-11-22 14:54:48,644 | INFO     | sum of square deviations: 59563903521.25805
[2025-11-22 13:56:28] 2025-11-22 14:54:48,673 | INFO     | sum of deviations: 779854093946.1515
[2025-11-22 13:56:28] 2025-11-22 14:54:48,673 | INFO     | mean x: 1763805648.2270365
[2025-11-22 13:56:28] 2025-11-22 14:54:48,673 | INFO     | mean y: 3000069.7850953205
[2025-11-22 13:56:28] 2025-11-22 14:54:48,673 | INFO     | intersect: -23090030681.70498
[2025-11-22 13:56:28] 2025-11-22 14:54:48,686 | INFO     | chi2: 7.600148180545254
[2025-11-22 13:56:28] 2025-11-22 14:54:48,686 | INFO     | current chi2=7.600148180545254 (change=22.850513543882766 %)
[2025-11-22 13:56:28] 2025-11-22 14:54:48,686 | INFO     | left removable region: 10
[2025-11-22 13:56:28] 2025-11-22 14:54:48,686 | INFO     | sum of square deviations: 53294404877.24283
[2025-11-22 13:56:28] 2025-11-22 14:54:48,700 | INFO     | sum of deviations: 1132654988615.4011
[2025-11-22 13:56:28] 2025-11-22 14:54:48,701 | INFO     | mean x: 1763805312.753597
[2025-11-22 13:56:28] 2025-11-22 14:54:48,701 | INFO     | mean y: 3047781.6744604316
[2025-11-22 13:56:28] 2025-11-22 14:54:48,701 | INFO     | intersect: -37482742537.93524
[2025-11-22 13:56:28] 2025-11-22 14:54:48,701 | INFO     | chi2: 0.15909962955078918
[2025-11-22 13:56:28] 2025-11-22 14:54:48,702 | INFO     | current memory leak: 21.25 B/s (using 556 data points, chi2=0.16)
[2025-11-22 13:56:28] 2025-11-22 14:54:48,702 | INFO     | could have reported an average CPU frequency of 3209 MHz (23 samples)
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | ..............................
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . Timing measurements:
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . get job = 0 s
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . initial setup = 3 s
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . payload setup = 13 s
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . stage-in = 0 s
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . payload execution = 35486 s
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . stage-out = 9 s
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | . log creation = 2 s
[2025-11-22 13:56:28] 2025-11-22 14:54:48,703 | INFO     | ..............................
[2025-11-22 13:56:28] 2025-11-22 14:54:49,032 | INFO     | 
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | job summary report
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | --------------------------------------------------
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | PanDA job id: 6893850472
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | task id: 47523449
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | errors: (none)
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | pilot state: finished 
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | transexitcode: 0
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | exeerrorcode: 0
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | exeerrordiag: 
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | exitcode: 0
[2025-11-22 13:56:28] 2025-11-22 14:54:49,052 | INFO     | exitmsg: OK
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | cpuconsumptiontime: 185302 s
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | nevents: 1000
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | neventsw: 0
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | pid: 850029
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | pgrp: 850029
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | corecount: 9
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | event service: False
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | sizes: {0: 2298636, 1: 2298835, 11: 2298835, 14: 2299125, 22: 2299153, 35505: 2340247, 35514: 2349241, 35518: 2349297, 35539: 2349543}
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | --------------------------------------------------
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | 
[2025-11-22 13:56:28] 2025-11-22 14:54:49,053 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-22 13:56:28] 2025-11-22 14:54:49,182 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,182 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,182 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,182 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,182 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,183 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,196 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:56:28] 2025-11-22 14:54:49,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:56:28] 2025-11-22 14:54:49,197 | INFO     | job 6893850472 has completed (purged errors)
[2025-11-22 13:56:28] 2025-11-22 14:54:49,197 | INFO     | overall cleanup function is called
[2025-11-22 13:56:28] 2025-11-22 14:54:50,286 | INFO     | --- collectZombieJob: --- 10, [850029]
[2025-11-22 13:56:28] 2025-11-22 14:54:50,286 | INFO     | zombie collector waiting for pid 850029
[2025-11-22 13:56:28] 2025-11-22 14:54:50,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:56:28] 2025-11-22 14:54:50,286 | INFO     | collected zombie processes
[2025-11-22 13:56:28] 2025-11-22 14:54:50,286 | INFO     | will attempt to kill all subprocesses of pid=850029
[2025-11-22 13:56:28] 2025-11-22 14:54:50,482 | INFO     | PID=806380 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 13:56:28] 2025-11-22 14:54:50,483 | INFO     | .. there are 52 such processes running
[2025-11-22 13:56:28] 2025-11-22 14:54:51,721 | INFO     | process IDs to be killed: [850029] (in reverse order)
[2025-11-22 13:56:28] 2025-11-22 14:54:52,043 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:56:28] 2025-11-22 14:54:52,043 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:56:28] 2025-11-22 14:54:52,217 | INFO     | did not find any defunct processes belonging to 850029
[2025-11-22 13:56:28] 2025-11-22 14:54:52,303 | INFO     | did not find any defunct processes belonging to 850029
[2025-11-22 13:56:28] 2025-11-22 14:54:52,317 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:56:28] 2025-11-22 14:54:52,317 | INFO     | ready for new job
[2025-11-22 13:56:28] 2025-11-22 14:54:52,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:56:28] 2025-11-22 14:54:52,329 | INFO     | ***************************************
[2025-11-22 13:56:28] 2025-11-22 14:54:52,330 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:56:28] 2025-11-22 14:54:52,330 | INFO     | ***************************************
[2025-11-22 13:56:28] 2025-11-22 14:54:52,331 | INFO     | 
[2025-11-22 13:56:28] 2025-11-22 14:54:52,350 | INFO     | architecture information:
[2025-11-22 13:56:28] 2025-11-22 14:54:52,354 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:56:28] 2025-11-22 14:54:52,429 | INFO     | cat /etc/os-release:
[2025-11-22 13:56:28] NAME="CentOS Linux"
[2025-11-22 13:56:28] VERSION="7 (Core)"
[2025-11-22 13:56:28] ID="centos"
[2025-11-22 13:56:28] ID_LIKE="rhel fedora"
[2025-11-22 13:56:28] VERSION_ID="7"
[2025-11-22 13:56:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:56:28] ANSI_COLOR="0;31"
[2025-11-22 13:56:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:56:28] HOME_URL="https://www.centos.org/"
[2025-11-22 13:56:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:56:28] 
[2025-11-22 13:56:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:56:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:56:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:56:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:56:28] 
[2025-11-22 13:56:28] 2025-11-22 14:54:52,429 | INFO     | ***************************************
[2025-11-22 13:56:28] 2025-11-22 14:54:52,963 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-22 13:56:28] 2025-11-22 14:54:53,062 | INFO     | sufficient remaining disk space (63670583296 B)
[2025-11-22 13:56:28] 2025-11-22 14:54:53,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:56:28] 2025-11-22 14:54:53,063 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:56:28] 2025-11-22 14:54:53,063 | INFO     | update_server=False
[2025-11-22 13:56:28] 2025-11-22 14:54:53,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:56:28] 2025-11-22 14:54:53,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:56:28] 2025-11-22 14:54:53,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:56:28] 2025-11-22 14:54:53,334 | INFO     | all job control threads have been joined
[2025-11-22 13:56:28] 2025-11-22 14:54:53,429 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:56:28] 2025-11-22 14:54:53,429 | INFO     | aborting loop
[2025-11-22 13:56:28] 2025-11-22 14:54:53,858 | INFO     | all payload control threads have been joined
[2025-11-22 13:56:28] 2025-11-22 14:54:54,069 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:54,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:56:28] 2025-11-22 14:54:54,214 | INFO     | all data control threads have been joined
[2025-11-22 13:56:28] 2025-11-22 14:54:54,349 | INFO     | [job] control thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:54,437 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:54,687 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:54,691 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:54,691 | INFO     | [job] validate thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:54,766 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:54,864 | INFO     | [payload] control thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:55,075 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:55,106 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:55,220 | INFO     | [data] control thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:55,373 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:55,495 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:55,499 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:55,529 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:54:57,079 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:56:28] 2025-11-22 14:55:04,759 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:56:28] 2025-11-22 14:55:06,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311450781504)>', '<ExcThread(monitor, started 140310743086848)>']
[2025-11-22 13:56:28] 2025-11-22 14:55:11,761 | INFO     | all workflow threads have been joined
[2025-11-22 13:56:28] 2025-11-22 14:55:11,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:56:28] 2025-11-22 14:55:11,761 | INFO     | traces error code: 0
[2025-11-22 13:56:28] 2025-11-22 14:55:11,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:56:28] 2025-11-22 14:55:21,574 | INFO     | 35575s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 13:56:28] 2025-11-22 14:55:24,549 | INFO     | PID=806380 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 13:56:28] 2025-11-22 14:55:24,549 | INFO     | .. there are 52 such processes running
[2025-11-22 13:56:28] 2025-11-22 14:55:24,550 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:56:28] 2025-11-22 14:55:24,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:56:28] 2025-11-22 14:55:24,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:56:28] 2025-11-22 14:55:24,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:56:28] 2025-11-22 14:55:24,551 | INFO     | [monitor] control thread has ended
[2025-11-22 13:56:28] 2025-11-22 14:55:25,777 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:56:28] 2025-11-22 14:55:25,792 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:56:28] 2025-11-22 14:55:25,810 [wrapper] pilotpid: 806380
[2025-11-22 13:56:28] 2025-11-22 14:55:25,812 [wrapper] Pilot exit status: 0
[2025-11-22 13:56:28] 2025-11-22 14:55:25,856 [wrapper] pandaids: 6893850472
[2025-11-22 13:56:28] 2025-11-22 14:55:26,038 [wrapper] cleanup supervisor_pilot 3922724 806381
[2025-11-22 13:56:28] 2025-11-22 14:55:26,073 [wrapper] Test setup, not cleaning
[2025-11-22 13:56:28] 2025-11-22 14:55:26,096 [wrapper] apfmon messages muted
[2025-11-22 13:56:28] 2025-11-22 14:55:26,137 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:56:28] 2025-11-22 14:55:26,154 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:56:28]  *** Error codes and diagnostics ***
[2025-11-22 13:56:28]     "exeErrorCode": 0,
[2025-11-22 13:56:28]     "exeErrorDiag": "",
[2025-11-22 13:56:28]     "pilotErrorCode": 0,
[2025-11-22 13:56:28]     "pilotErrorDiag": "",
[2025-11-22 13:56:28]  *** Listing of results directory ***
[2025-11-22 13:56:28] total 1297216
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-22 13:56:28] -rwx------. 1 boincer umatlas     36292 Nov 20 06:27 runpilot2-wrapper.sh
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:27 queuedata.json
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:56:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:01 run_atlas
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:01 job.xml
[2025-11-22 13:56:28] -rw-r--r--. 2 boincer umatlas 408376704 Nov 22 00:01 EVNT.47493127._000338.pool.root.1
[2025-11-22 13:56:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-22 13:56:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:01 shared
[2025-11-22 13:56:28] -rw-r--r--. 2 boincer umatlas    590099 Nov 22 00:01 input.tar.gz
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:01 boinc_lockfile
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 00:01 pandaJob.out
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas        57 Nov 22 00:01 setup.sh.local
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas    989752 Nov 22 00:01 agis_schedconf.cvmfs.json
[2025-11-22 13:56:28] drwx------. 5 boincer umatlas      4096 Nov 22 00:01 pilot3
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas       531 Nov 22 09:41 boinc_task_state.xml
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas 903980819 Nov 22 09:53 HITS.47523449._003376.pool.root.1
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas      1071 Nov 22 09:54 memory_monitor_summary.json
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas   1526164 Nov 22 09:54 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas   1914939 Nov 22 09:54 log.47523449._003376.job.log.tgz.1
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas      8622 Nov 22 09:54 heartbeat.json
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas        95 Nov 22 09:55 pilot_heartbeat.json
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas       938 Nov 22 09:55 pilotlog.txt
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas   4120506 Nov 22 09:55 log.47523449._003376.job.log.1
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas       353 Nov 22 09:55 output.list
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas       620 Nov 22 09:55 runtime_log
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas   6051840 Nov 22 09:55 result.tar.gz
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas      9338 Nov 22 09:55 runtime_log.err
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas       663 Nov 22 09:55 pt8LDmszHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQXGKDmWo2oTo.diag
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas      6945 Nov 22 13:56 init_data.xml
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 13:56 boinc_mmap_file
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas        28 Nov 22 13:56 wrapper_checkpoint.txt
[2025-11-22 13:56:28] -rw-r--r--. 1 boincer umatlas     21422 Nov 22 13:56 stderr.txt
[2025-11-22 13:56:28] HITS file was successfully produced:
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas 903980819 Nov 22 09:53 shared/HITS.pool.root.1
[2025-11-22 13:56:28]  *** Contents of shared directory: ***
[2025-11-22 13:56:28] total 1288120
[2025-11-22 13:56:28] -rw-r--r--. 2 boincer umatlas 408376704 Nov 22 00:01 ATLAS.root_0
[2025-11-22 13:56:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-22 13:56:28] -rw-r--r--. 2 boincer umatlas    590099 Nov 22 00:01 input.tar.gz
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas 903980819 Nov 22 09:53 HITS.pool.root.1
[2025-11-22 13:56:28] -rw-------. 1 boincer umatlas   6051840 Nov 22 09:55 result.tar.gz
13:56:50 (784143): run_atlas exited; CPU time 185415.572254
13:56:50 (784143): called boinc_finish(0)

</stderr_txt>
]]>

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