Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:37 (792398): wrapper (7.7.26015): starting
00:01:37 (792398): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:01:37] Arguments: --nthreads 9
[2025-11-22 00:01:37] Threads: 9
[2025-11-22 00:01:37] Checking for CVMFS
[2025-11-22 00:01:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:01:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:01:38] 2.13.3.0 11235 22148 277676 153159 2 773 32065550 32935937 40109 16776704 0 121199045 99.496 146094892 34907 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:01:38] CVMFS is ok
[2025-11-22 00:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:01:38] Further information can be found at the LHC@home message board.
[2025-11-22 00:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:01:38] Checking for apptainer binary...
[2025-11-22 00:01:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:01:38] Running /usr/bin/apptainer --version
[2025-11-22 00:01:38] apptainer version 1.4.4-1.el9
[2025-11-22 00:01:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:01:38] c7-2-37.aglt2.org
[2025-11-22 00:01:38] apptainer works
[2025-11-22 00:01:38] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:01:38] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:01:38] Starting ATLAS job with PandaID=6893850363
[2025-11-22 00:01:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:42:57]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:42:57] 2025-11-23 14:42:00,790 | INFO     | total number of processed events: 1000 (read)
[2025-11-23 09:42:57] 2025-11-23 14:42:00,801 | INFO     | executing command: lscpu
[2025-11-23 09:42:57] 2025-11-23 14:42:00,911 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-23 09:42:57] 2025-11-23 14:42:01,717 | INFO     | time since job start (121190s) is within the limit (172800.0s)
[2025-11-23 09:42:57] 2025-11-23 14:42:02,825 | INFO     | monitor loop #3795: job 0:6893850363 is in state 'finished'
[2025-11-23 09:42:57] 2025-11-23 14:42:02,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:42:57] 2025-11-23 14:42:03,725 | INFO     | time since job start (121192s) is within the limit (172800.0s)
[2025-11-23 09:42:57] 2025-11-23 14:42:05,330 | INFO     | monitor loop #3796: job 0:6893850363 is in state 'finished'
[2025-11-23 09:42:57] 2025-11-23 14:42:05,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:42:57] 2025-11-23 14:42:05,732 | INFO     | time since job start (121194s) is within the limit (172800.0s)
[2025-11-23 09:42:57] 2025-11-23 14:42:07,739 | INFO     | time since job start (121196s) is within the limit (172800.0s)
[2025-11-23 09:42:57] 2025-11-23 14:42:07,837 | INFO     | monitor loop #3797: job 0:6893850363 is in state 'finished'
[2025-11-23 09:42:57] 2025-11-23 14:42:07,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:42:57] 2025-11-23 14:42:09,745 | INFO     | time since job start (121198s) is within the limit (172800.0s)
[2025-11-23 09:42:57] 2025-11-23 14:42:10,342 | INFO     | monitor loop #3798: job 0:6893850363 is in state 'finished'
[2025-11-23 09:42:57] 2025-11-23 14:42:10,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:42:57] 2025-11-23 14:42:11,221 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 09:42:57] 2025-11-23 14:42:11,235 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3163.193385416666
[2025-11-23 09:42:57] 2025-11-23 14:42:11,250 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6893850363/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:42:57] 2025-11-23 14:42:11,251 | INFO     | extracted standard info from prmon json
[2025-11-23 09:42:57] 2025-11-23 14:42:11,251 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:42:57] 2025-11-23 14:42:11,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:42:57] 2025-11-23 14:42:11,278 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:42:57] 2025-11-23 14:42:11,279 | INFO     | sum of square deviations: 2428975451149.1987
[2025-11-23 09:42:57] 2025-11-23 14:42:11,388 | INFO     | sum of deviations: 19954224863710.87
[2025-11-23 09:42:57] 2025-11-23 14:42:11,388 | INFO     | mean x: 1763848318.5407856
[2025-11-23 09:42:57] 2025-11-23 14:42:11,388 | INFO     | mean y: 3274379.248741188
[2025-11-23 09:42:57] 2025-11-23 14:42:11,388 | INFO     | intersect: -14486878642.672121
[2025-11-23 09:42:57] 2025-11-23 14:42:11,390 | INFO     | chi2: 26.12470320943088
[2025-11-23 09:42:57] 2025-11-23 14:42:11,392 | INFO     | sum of square deviations: 2410678001055.348
[2025-11-23 09:42:57] 2025-11-23 14:42:11,550 | INFO     | sum of deviations: 20684724976924.742
[2025-11-23 09:42:57] 2025-11-23 14:42:11,551 | INFO     | mean x: 1763848166.0484605
[2025-11-23 09:42:57] 2025-11-23 14:42:11,551 | INFO     | mean y: 3280467.0969207473
[2025-11-23 09:42:57] 2025-11-23 14:42:11,551 | INFO     | intersect: -15131347301.436743
[2025-11-23 09:42:57] 2025-11-23 14:42:11,553 | INFO     | chi2: 22.83330835456281
[2025-11-23 09:42:57] 2025-11-23 14:42:11,553 | INFO     | current chi2=22.83330835456281 (change=12.59878372007646 %)
[2025-11-23 09:42:57] 2025-11-23 14:42:11,553 | INFO     | right removable region: 1980
[2025-11-23 09:42:57] 2025-11-23 14:42:11,580 | INFO     | sum of square deviations: 2410674317265.348
[2025-11-23 09:42:57] 2025-11-23 14:42:11,788 | INFO     | sum of deviations: 19137715392596.215
[2025-11-23 09:42:57] 2025-11-23 14:42:11,788 | INFO     | time since job start (121200s) is within the limit (172800.0s)
[2025-11-23 09:42:57] 2025-11-23 14:42:11,791 | INFO     | mean x: 1763848471.0484605
[2025-11-23 09:42:57] 2025-11-23 14:42:11,792 | INFO     | mean y: 3281182.226653205
[2025-11-23 09:42:57] 2025-11-23 14:42:11,792 | INFO     | intersect: -13999452323.842312
[2025-11-23 09:42:57] 2025-11-23 14:42:11,793 | INFO     | chi2: 23.0246327565923
[2025-11-23 09:42:57] 2025-11-23 14:42:11,794 | INFO     | current chi2=23.0246327565923 (change=11.866433191552854 %)
[2025-11-23 09:42:57] 2025-11-23 14:42:11,794 | INFO     | left removable region: 10
[2025-11-23 09:42:57] 2025-11-23 14:42:11,813 | INFO     | sum of square deviations: 2370740615230.4404
[2025-11-23 09:42:57] 2025-11-23 14:42:11,958 | INFO     | sum of deviations: 19383146210375.348
[2025-11-23 09:42:57] 2025-11-23 14:42:11,958 | INFO     | mean x: 1763848440.5639594
[2025-11-23 09:42:57] 2025-11-23 14:42:11,958 | INFO     | mean y: 3293809.4695431474
[2025-11-23 09:42:57] 2025-11-23 14:42:11,959 | INFO     | intersect: -14417909419.914768
[2025-11-23 09:42:57] 2025-11-23 14:42:11,960 | INFO     | chi2: 17.543812680930383
[2025-11-23 09:42:57] 2025-11-23 14:42:11,960 | INFO     | current memory leak: 8.18 B/s (using 1970 data points, chi2=17.54)
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | could have reported an average CPU frequency of 3164 MHz (41 samples)
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | ..............................
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | . Timing measurements:
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | . get job = 0 s
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | . initial setup = 3 s
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | . payload setup = 12 s
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | . stage-in = 0 s
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | . payload execution = 121147 s
[2025-11-23 09:42:57] 2025-11-23 14:42:11,962 | INFO     | . stage-out = 5 s
[2025-11-23 09:42:57] 2025-11-23 14:42:11,971 | INFO     | . log creation = 1 s
[2025-11-23 09:42:57] 2025-11-23 14:42:11,971 | INFO     | ..............................
[2025-11-23 09:42:57] 2025-11-23 14:42:12,341 | INFO     | 
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | job summary report
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | --------------------------------------------------
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | PanDA job id: 6893850363
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | task id: 47523449
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | errors: (none)
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | pilot state: finished 
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | transexitcode: 0
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | exeerrorcode: 0
[2025-11-23 09:42:57] 2025-11-23 14:42:12,342 | INFO     | exeerrordiag: 
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | exitcode: 0
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | exitmsg: OK
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | cpuconsumptiontime: 209946 s
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | nevents: 1000
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | neventsw: 0
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | pid: 848908
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | pgrp: 848908
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | corecount: 9
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | event service: False
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | sizes: {0: 2298636, 1: 2298835, 9: 2299097, 11: 2299125, 121161: 2355418, 121162: 2355417, 121168: 2364595, 121171: 2364651, 121182: 2364771}
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | --------------------------------------------------
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | 
[2025-11-23 09:42:57] 2025-11-23 14:42:12,343 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-23 09:42:57] 2025-11-23 14:42:12,396 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,397 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | job 6893850363 has completed (purged errors)
[2025-11-23 09:42:57] 2025-11-23 14:42:12,398 | INFO     | overall cleanup function is called
[2025-11-23 09:42:57] 2025-11-23 14:42:13,487 | INFO     | --- collectZombieJob: --- 10, [848908]
[2025-11-23 09:42:57] 2025-11-23 14:42:13,487 | INFO     | zombie collector waiting for pid 848908
[2025-11-23 09:42:57] 2025-11-23 14:42:13,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:42:57] 2025-11-23 14:42:13,487 | INFO     | collected zombie processes
[2025-11-23 09:42:57] 2025-11-23 14:42:13,487 | INFO     | will attempt to kill all subprocesses of pid=848908
[2025-11-23 09:42:57] 2025-11-23 14:42:14,638 | INFO     | process IDs to be killed: [848908] (in reverse order)
[2025-11-23 09:42:57] 2025-11-23 14:42:14,920 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:42:57] 2025-11-23 14:42:14,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:42:57] 2025-11-23 14:42:15,016 | INFO     | did not find any defunct processes belonging to 848908
[2025-11-23 09:42:57] 2025-11-23 14:42:15,201 | INFO     | did not find any defunct processes belonging to 848908
[2025-11-23 09:42:57] 2025-11-23 14:42:15,222 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:42:57] 2025-11-23 14:42:15,250 | INFO     | ready for new job
[2025-11-23 09:42:57] 2025-11-23 14:42:15,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:42:57] 2025-11-23 14:42:15,274 | INFO     | ***************************************
[2025-11-23 09:42:57] 2025-11-23 14:42:15,274 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:42:57] 2025-11-23 14:42:15,274 | INFO     | ***************************************
[2025-11-23 09:42:57] 2025-11-23 14:42:15,274 | INFO     | 
[2025-11-23 09:42:57] 2025-11-23 14:42:15,287 | INFO     | architecture information:
[2025-11-23 09:42:57] 2025-11-23 14:42:15,297 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:42:57] 2025-11-23 14:42:15,333 | INFO     | cat /etc/os-release:
[2025-11-23 09:42:57] NAME="CentOS Linux"
[2025-11-23 09:42:57] VERSION="7 (Core)"
[2025-11-23 09:42:57] ID="centos"
[2025-11-23 09:42:57] ID_LIKE="rhel fedora"
[2025-11-23 09:42:57] VERSION_ID="7"
[2025-11-23 09:42:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:42:57] ANSI_COLOR="0;31"
[2025-11-23 09:42:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:42:57] HOME_URL="https://www.centos.org/"
[2025-11-23 09:42:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:42:57] 
[2025-11-23 09:42:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:42:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:42:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:42:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:42:57] 
[2025-11-23 09:42:57] 2025-11-23 14:42:15,333 | INFO     | ***************************************
[2025-11-23 09:42:57] 2025-11-23 14:42:15,836 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-23 09:42:57] 2025-11-23 14:42:15,897 | INFO     | sufficient remaining disk space (66230157312 B)
[2025-11-23 09:42:57] 2025-11-23 14:42:15,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:42:57] 2025-11-23 14:42:15,898 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:42:57] 2025-11-23 14:42:15,898 | INFO     | update_server=False
[2025-11-23 09:42:57] 2025-11-23 14:42:15,898 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:42:57] 2025-11-23 14:42:15,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:42:57] 2025-11-23 14:42:15,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:42:57] 2025-11-23 14:42:16,199 | INFO     | all payload control threads have been joined
[2025-11-23 09:42:57] 2025-11-23 14:42:16,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:42:57] 2025-11-23 14:42:16,415 | INFO     | aborting loop
[2025-11-23 09:42:57] 2025-11-23 14:42:16,538 | INFO     | all data control threads have been joined
[2025-11-23 09:42:57] 2025-11-23 14:42:16,904 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:16,920 | INFO     | all job control threads have been joined
[2025-11-23 09:42:57] 2025-11-23 14:42:17,205 | INFO     | [payload] control thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,289 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:42:57] 2025-11-23 14:42:17,403 | INFO     | [job] validate thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,410 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,421 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,548 | INFO     | [data] control thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,623 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,927 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,927 | INFO     | [job] control thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,935 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:17,935 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:18,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:18,210 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:18,372 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:19,920 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:42:57] 2025-11-23 14:42:45,720 | INFO     | PID=823060 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 09:42:57] 2025-11-23 14:42:45,720 | INFO     | .. there are 66 such processes running
[2025-11-23 09:42:57] 2025-11-23 14:42:45,721 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:42:57] 2025-11-23 14:42:45,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:42:57] 2025-11-23 14:42:45,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:42:57] 2025-11-23 14:42:51,459 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:42:57] 2025-11-23 14:42:51,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140717095819072)>', '<ExcThread(monitor, started 140716474885888)>']
[2025-11-23 09:42:57] 2025-11-23 14:42:51,756 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:42:57] 2025-11-23 14:42:51,756 | INFO     | [monitor] control thread has ended
[2025-11-23 09:42:57] 2025-11-23 14:42:56,625 | INFO     | all workflow threads have been joined
[2025-11-23 09:42:57] 2025-11-23 14:42:56,625 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:42:57] 2025-11-23 14:42:56,625 | INFO     | traces error code: 0
[2025-11-23 09:42:57] 2025-11-23 14:42:56,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:42:57] 2025-11-23 14:42:57,000 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:42:57] 2025-11-23 14:42:57,021 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:42:57] 2025-11-23 14:42:57,043 [wrapper] pilotpid: 823060
[2025-11-23 09:42:57] 2025-11-23 14:42:57,088 [wrapper] Pilot exit status: 0
[2025-11-23 09:42:57] 2025-11-23 14:42:57,184 [wrapper] pandaids: 6893850363
[2025-11-23 09:42:57] 2025-11-23 14:42:57,343 [wrapper] cleanup supervisor_pilot 1374847 823064
[2025-11-23 09:42:57] 2025-11-23 14:42:57,346 [wrapper] Test setup, not cleaning
[2025-11-23 09:42:57] 2025-11-23 14:42:57,348 [wrapper] apfmon messages muted
[2025-11-23 09:42:57] 2025-11-23 14:42:57,351 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:42:57] 2025-11-23 14:42:57,353 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:42:57]  *** Error codes and diagnostics ***
[2025-11-23 09:42:57]     "exeErrorCode": 0,
[2025-11-23 09:42:57]     "exeErrorDiag": "",
[2025-11-23 09:42:57]     "pilotErrorCode": 0,
[2025-11-23 09:42:57]     "pilotErrorDiag": "",
[2025-11-23 09:42:57]  *** Listing of results directory ***
[2025-11-23 09:42:57] total 1324964
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-23 09:42:57] -rwx------. 1 boincer umatlas     36292 Nov 20 06:23 runpilot2-wrapper.sh
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:23 queuedata.json
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:42:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:01 run_atlas
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:01 job.xml
[2025-11-23 09:42:57] -rw-r--r--. 2 boincer umatlas 409179113 Nov 22 00:01 EVNT.47493127._000332.pool.root.1
[2025-11-23 09:42:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-23 09:42:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:01 shared
[2025-11-23 09:42:57] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 00:01 input.tar.gz
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:01 boinc_lockfile
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 00:01 pandaJob.out
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas      2073 Nov 22 00:01 stderr.txt
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas        57 Nov 22 00:01 setup.sh.local
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas    989752 Nov 22 00:02 agis_schedconf.cvmfs.json
[2025-11-23 09:42:57] drwx------. 5 boincer umatlas      4096 Nov 22 00:02 pilot3
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas       533 Nov 23 09:07 boinc_task_state.xml
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas      6945 Nov 23 09:38 init_data.xml
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas 915964446 Nov 23 09:40 HITS.47523449._003315.pool.root.1
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas      1074 Nov 23 09:41 memory_monitor_summary.json
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas   1526164 Nov 23 09:41 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas   2634650 Nov 23 09:41 log.47523449._003315.job.log.tgz.1
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas      8643 Nov 23 09:42 heartbeat.json
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas        95 Nov 23 09:42 pilot_heartbeat.json
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 09:42 boinc_mmap_file
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas        29 Nov 23 09:42 wrapper_checkpoint.txt
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas      4823 Nov 23 09:42 pilotlog.txt
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas  11216649 Nov 23 09:42 log.47523449._003315.job.log.1
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas       353 Nov 23 09:42 output.list
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas       620 Nov 23 09:42 runtime_log
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas  13875200 Nov 23 09:42 result.tar.gz
[2025-11-23 09:42:57] -rw-r--r--. 1 boincer umatlas      9339 Nov 23 09:42 runtime_log.err
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas       668 Nov 23 09:42 lWzMDmtvHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyWGKDmn98mqn.diag
[2025-11-23 09:42:57] HITS file was successfully produced:
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas 915964446 Nov 23 09:40 shared/HITS.pool.root.1
[2025-11-23 09:42:57]  *** Contents of shared directory: ***
[2025-11-23 09:42:57] total 1308248
[2025-11-23 09:42:57] -rw-r--r--. 2 boincer umatlas 409179113 Nov 22 00:01 ATLAS.root_0
[2025-11-23 09:42:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:01 start_atlas.sh
[2025-11-23 09:42:57] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 00:01 input.tar.gz
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas 915964446 Nov 23 09:40 HITS.pool.root.1
[2025-11-23 09:42:57] -rw-------. 1 boincer umatlas  13875200 Nov 23 09:42 result.tar.gz
09:42:59 (792398): run_atlas exited; CPU time 211162.350890
09:42:59 (792398): called boinc_finish(0)

</stderr_txt>
]]>

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