Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:31 (1924372): wrapper (7.7.26015): starting
00:03:31 (1924372): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 00:03:31] Arguments: --nthreads 12
[2025-11-22 00:03:31] Threads: 12
[2025-11-22 00:03:31] Checking for CVMFS
[2025-11-22 00:03:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:03:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:03:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:03:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:03:32] 2.13.2.0 8544 28173 164496 153159 2 113 39101115 40960000 21897 16776704 0 53875966 99.787 29922585 39155 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:03:32] CVMFS is ok
[2025-11-22 00:03:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:03:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:03:32] Further information can be found at the LHC@home message board.
[2025-11-22 00:03:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:03:32] Checking for apptainer binary...
[2025-11-22 00:03:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:03:32] Running /usr/bin/apptainer --version
[2025-11-22 00:03:33] apptainer version 1.4.4-1.el9
[2025-11-22 00:03:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:03:33] c-212-10.aglt2.org
[2025-11-22 00:03:33] apptainer works
[2025-11-22 00:03:33] Set ATHENA_PROC_NUMBER=12
[2025-11-22 00:03:33] Set ATHENA_CORE_NUMBER=12
[2025-11-22 00:03:33] Starting ATLAS job with PandaID=6892543951
[2025-11-22 00:03:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 21:22:27]  *** The last 200 lines of the pilot log: ***
[2025-11-22 21:22:27] 2025-11-23 02:21:51,977 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 21:22:27] 2025-11-23 02:21:51,991 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2921.2299062499987
[2025-11-22 21:22:27] 2025-11-23 02:21:52,021 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6892543951/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,022 | INFO     | extracted standard info from prmon json
[2025-11-22 21:22:27] 2025-11-23 02:21:52,022 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 21:22:27] 2025-11-23 02:21:52,022 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 21:22:27] 2025-11-23 02:21:52,058 | INFO     | fitting pss+swap vs Time
[2025-11-22 21:22:27] 2025-11-23 02:21:52,060 | INFO     | sum of square deviations: 614400478249.7394
[2025-11-22 21:22:27] 2025-11-23 02:21:52,464 | INFO     | sum of deviations: 5538548143958.351
[2025-11-22 21:22:27] 2025-11-23 02:21:52,465 | INFO     | mean x: 1763826163.852707
[2025-11-22 21:22:27] 2025-11-23 02:21:52,465 | INFO     | mean y: 3348811.266719745
[2025-11-22 21:22:27] 2025-11-23 02:21:52,465 | INFO     | intersect: -15896762715.177607
[2025-11-22 21:22:27] 2025-11-23 02:21:52,466 | INFO     | chi2: 13.802942579885624
[2025-11-22 21:22:27] 2025-11-23 02:21:52,470 | INFO     | sum of square deviations: 607092654755.5648
[2025-11-22 21:22:27] 2025-11-23 02:21:52,527 | INFO     | sum of deviations: 6049195277739.817
[2025-11-22 21:22:27] 2025-11-23 02:21:52,528 | INFO     | mean x: 1763826011.3581135
[2025-11-22 21:22:27] 2025-11-23 02:21:52,534 | INFO     | mean y: 3359468.145483613
[2025-11-22 21:22:27] 2025-11-23 02:21:52,534 | INFO     | intersect: -17571763365.38334
[2025-11-22 21:22:27] 2025-11-23 02:21:52,535 | INFO     | chi2: 10.38274038404576
[2025-11-22 21:22:27] 2025-11-23 02:21:52,535 | INFO     | current chi2=10.38274038404576 (change=24.77879029087582 %)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,536 | INFO     | right removable region: 1250
[2025-11-22 21:22:27] 2025-11-23 02:21:52,537 | INFO     | sum of square deviations: 607091618365.5646
[2025-11-22 21:22:27] 2025-11-23 02:21:52,585 | INFO     | sum of deviations: 4989878947935.002
[2025-11-22 21:22:27] 2025-11-23 02:21:52,585 | INFO     | mean x: 1763826316.3581135
[2025-11-22 21:22:27] 2025-11-23 02:21:52,586 | INFO     | mean y: 3360257.5267785774
[2025-11-22 21:22:27] 2025-11-23 02:21:52,586 | INFO     | intersect: -14494088788.96844
[2025-11-22 21:22:27] 2025-11-23 02:21:52,587 | INFO     | chi2: 10.21559495742312
[2025-11-22 21:22:27] 2025-11-23 02:21:52,587 | INFO     | current chi2=10.21559495742312 (change=25.989730825151558 %)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,588 | INFO     | sum of square deviations: 599840945618.806
[2025-11-22 21:22:27] 2025-11-23 02:21:52,632 | INFO     | sum of deviations: 4469360903540.688
[2025-11-22 21:22:27] 2025-11-23 02:21:52,632 | INFO     | mean x: 1763826468.8635633
[2025-11-22 21:22:27] 2025-11-23 02:21:52,632 | INFO     | mean y: 3371202.592295345
[2025-11-22 21:22:27] 2025-11-23 02:21:52,632 | INFO     | intersect: -13138741082.584602
[2025-11-22 21:22:27] 2025-11-23 02:21:52,633 | INFO     | chi2: 7.041957110238687
[2025-11-22 21:22:27] 2025-11-23 02:21:52,634 | INFO     | current chi2=7.041957110238687 (change=31.066598278530243 %)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,635 | INFO     | sum of square deviations: 592648759619.0972
[2025-11-22 21:22:27] 2025-11-23 02:21:52,688 | INFO     | sum of deviations: 4326126538775.3477
[2025-11-22 21:22:27] 2025-11-23 02:21:52,688 | INFO     | mean x: 1763826621.3634167
[2025-11-22 21:22:27] 2025-11-23 02:21:52,689 | INFO     | mean y: 3374239.6067687348
[2025-11-22 21:22:27] 2025-11-23 02:21:52,689 | INFO     | intersect: -12871936866.05213
[2025-11-22 21:22:27] 2025-11-23 02:21:52,690 | INFO     | chi2: 6.940432887589042
[2025-11-22 21:22:27] 2025-11-23 02:21:52,690 | INFO     | current chi2=6.940432887589042 (change=1.4417046434723846 %)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,690 | INFO     | left removable region: 30
[2025-11-22 21:22:27] 2025-11-23 02:21:52,691 | INFO     | sum of square deviations: 563069486773.3071
[2025-11-22 21:22:27] 2025-11-23 02:21:52,737 | INFO     | sum of deviations: 4595528694722.393
[2025-11-22 21:22:27] 2025-11-23 02:21:52,737 | INFO     | mean x: 1763826895.8729508
[2025-11-22 21:22:27] 2025-11-23 02:21:52,737 | INFO     | mean y: 3395657.4090163936
[2025-11-22 21:22:27] 2025-11-23 02:21:52,737 | INFO     | intersect: -14392193702.187464
[2025-11-22 21:22:27] 2025-11-23 02:21:52,738 | INFO     | chi2: 2.3387842256721507
[2025-11-22 21:22:27] 2025-11-23 02:21:52,739 | INFO     | current memory leak: 8.16 B/s (using 1220 data points, chi2=2.34)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | could have reported an average CPU frequency of 2959 MHz (46 samples)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | ..............................
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | . Timing measurements:
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | . get job = 0 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | . initial setup = 2 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | . payload setup = 14 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | . stage-in = 0 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | . payload execution = 76620 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,741 | INFO     | . stage-out = 6 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,742 | INFO     | . log creation = 1 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,742 | INFO     | ..............................
[2025-11-22 21:22:27] 2025-11-23 02:21:52,868 | INFO     | 
[2025-11-22 21:22:27] 2025-11-23 02:21:52,868 | INFO     | job summary report
[2025-11-22 21:22:27] 2025-11-23 02:21:52,868 | INFO     | --------------------------------------------------
[2025-11-22 21:22:27] 2025-11-23 02:21:52,868 | INFO     | PanDA job id: 6892543951
[2025-11-22 21:22:27] 2025-11-23 02:21:52,868 | INFO     | task id: 47493029
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | errors: (none)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | pilot state: finished 
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | transexitcode: 0
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | exeerrorcode: 0
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | exeerrordiag: 
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | exitcode: 0
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | exitmsg: OK
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | cpuconsumptiontime: 233406 s
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | nevents: 1000
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | neventsw: 0
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | pid: 1947140
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | pgrp: 1947140
[2025-11-22 21:22:27] 2025-11-23 02:21:52,869 | INFO     | corecount: 12
[2025-11-22 21:22:27] 2025-11-23 02:21:52,870 | INFO     | event service: False
[2025-11-22 21:22:27] 2025-11-23 02:21:52,870 | INFO     | sizes: {0: 2298618, 1: 2298817, 11: 2299079, 12: 2299107, 76635: 2359724, 76636: 2359723, 76643: 2368901, 76645: 2368957, 76653: 2369203}
[2025-11-22 21:22:27] 2025-11-23 02:21:52,870 | INFO     | --------------------------------------------------
[2025-11-22 21:22:27] 2025-11-23 02:21:52,870 | INFO     | 
[2025-11-22 21:22:27] 2025-11-23 02:21:52,870 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-22 21:22:27] 2025-11-23 02:21:52,937 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | job 6892543951 has completed (purged errors)
[2025-11-22 21:22:27] 2025-11-23 02:21:52,939 | INFO     | overall cleanup function is called
[2025-11-22 21:22:27] 2025-11-23 02:21:53,528 | INFO     | PID=1931641 has CPU usage=16.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 21:22:27] 2025-11-23 02:21:53,530 | INFO     | .. there are 17 such processes running
[2025-11-22 21:22:27] 2025-11-23 02:21:54,013 | INFO     | --- collectZombieJob: --- 10, [1947140]
[2025-11-22 21:22:27] 2025-11-23 02:21:54,013 | INFO     | zombie collector waiting for pid 1947140
[2025-11-22 21:22:27] 2025-11-23 02:21:54,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 21:22:27] 2025-11-23 02:21:54,014 | INFO     | collected zombie processes
[2025-11-22 21:22:27] 2025-11-23 02:21:54,014 | INFO     | will attempt to kill all subprocesses of pid=1947140
[2025-11-22 21:22:27] 2025-11-23 02:21:54,793 | INFO     | process IDs to be killed: [1947140] (in reverse order)
[2025-11-22 21:22:27] 2025-11-23 02:21:54,931 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 21:22:27] 2025-11-23 02:21:54,931 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 21:22:27] 2025-11-23 02:21:54,947 | INFO     | did not find any defunct processes belonging to 1947140
[2025-11-22 21:22:27] 2025-11-23 02:21:54,962 | INFO     | did not find any defunct processes belonging to 1947140
[2025-11-22 21:22:27] 2025-11-23 02:21:54,965 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 21:22:27] 2025-11-23 02:21:54,965 | INFO     | ready for new job
[2025-11-22 21:22:27] 2025-11-23 02:21:54,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 21:22:27] 2025-11-23 02:21:54,974 | INFO     | ***************************************
[2025-11-22 21:22:27] 2025-11-23 02:21:54,974 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 21:22:27] 2025-11-23 02:21:54,975 | INFO     | ***************************************
[2025-11-22 21:22:27] 2025-11-23 02:21:54,975 | INFO     | 
[2025-11-22 21:22:27] 2025-11-23 02:21:54,981 | INFO     | architecture information:
[2025-11-22 21:22:27] 2025-11-23 02:21:54,982 | INFO     | executing command: cat /etc/os-release
[2025-11-22 21:22:27] 2025-11-23 02:21:55,002 | INFO     | cat /etc/os-release:
[2025-11-22 21:22:27] NAME="CentOS Linux"
[2025-11-22 21:22:27] VERSION="7 (Core)"
[2025-11-22 21:22:27] ID="centos"
[2025-11-22 21:22:27] ID_LIKE="rhel fedora"
[2025-11-22 21:22:27] VERSION_ID="7"
[2025-11-22 21:22:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 21:22:27] ANSI_COLOR="0;31"
[2025-11-22 21:22:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 21:22:27] HOME_URL="https://www.centos.org/"
[2025-11-22 21:22:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 21:22:27] 
[2025-11-22 21:22:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 21:22:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 21:22:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 21:22:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 21:22:27] 
[2025-11-22 21:22:27] 2025-11-23 02:21:55,002 | INFO     | ***************************************
[2025-11-22 21:22:27] 2025-11-23 02:21:55,506 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-22 21:22:27] 2025-11-23 02:21:55,536 | INFO     | sufficient remaining disk space (122810269696 B)
[2025-11-22 21:22:27] 2025-11-23 02:21:55,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 21:22:27] 2025-11-23 02:21:55,537 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 21:22:27] 2025-11-23 02:21:55,537 | INFO     | update_server=False
[2025-11-22 21:22:27] 2025-11-23 02:21:55,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 21:22:27] 2025-11-23 02:21:55,543 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:22:27] 2025-11-23 02:21:55,543 | INFO     | aborting loop
[2025-11-22 21:22:27] 2025-11-23 02:21:55,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 21:22:27] 2025-11-23 02:21:55,799 | INFO     | all data control threads have been joined
[2025-11-22 21:22:27] 2025-11-23 02:21:56,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 21:22:27] 2025-11-23 02:21:56,548 | INFO     | [job] retrieve thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:56,551 | INFO     | [job] job monitor thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:56,570 | INFO     | all payload control threads have been joined
[2025-11-22 21:22:27] 2025-11-23 02:21:56,805 | INFO     | [data] control thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:56,914 | INFO     | [job] validate thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:56,995 | INFO     | all job control threads have been joined
[2025-11-22 21:22:27] 2025-11-23 02:21:57,371 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:57,490 | INFO     | [payload] failed_post thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:57,576 | INFO     | [payload] control thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:57,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:22:27] 2025-11-23 02:21:57,968 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:58,001 | INFO     | [job] control thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:58,041 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:58,044 | INFO     | [data] copytool_in thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:58,168 | INFO     | [payload] validate_post thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:58,230 | INFO     | [data] copytool_out thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:58,889 | INFO     | [job] queue monitor thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:21:59,636 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:22:06,294 | INFO     | job.realtimelogging is not enabled
[2025-11-22 21:22:27] 2025-11-23 02:22:06,604 | INFO     | [monitor] cgroup control has ended
[2025-11-22 21:22:27] 2025-11-23 02:22:07,300 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 21:22:27] 2025-11-23 02:22:07,544 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951537489728)>', '<ExcThread(monitor, started 139951263946496)>']
[2025-11-22 21:22:27] 2025-11-23 02:22:12,572 | INFO     | all workflow threads have been joined
[2025-11-22 21:22:27] 2025-11-23 02:22:12,572 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 21:22:27] 2025-11-23 02:22:12,573 | INFO     | traces error code: 0
[2025-11-22 21:22:27] 2025-11-23 02:22:12,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 21:22:27] 2025-11-23 02:22:26,379 | INFO     | PID=1931641 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 21:22:27] 2025-11-23 02:22:26,380 | INFO     | .. there are 17 such processes running
[2025-11-22 21:22:27] 2025-11-23 02:22:26,380 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 21:22:27] 2025-11-23 02:22:26,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 21:22:27] 2025-11-23 02:22:26,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 21:22:27] 2025-11-23 02:22:26,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 21:22:27] 2025-11-23 02:22:26,380 | INFO     | [monitor] control thread has ended
[2025-11-22 21:22:27] 2025-11-23 02:22:26,559 [wrapper] ==== pilot stdout END ====
[2025-11-22 21:22:27] 2025-11-23 02:22:26,575 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 21:22:27] 2025-11-23 02:22:26,601 [wrapper] pilotpid: 1931641
[2025-11-22 21:22:27] 2025-11-23 02:22:26,604 [wrapper] Pilot exit status: 0
[2025-11-22 21:22:27] 2025-11-23 02:22:26,700 [wrapper] pandaids: 6892543951
[2025-11-22 21:22:27] 2025-11-23 02:22:26,850 [wrapper] cleanup supervisor_pilot  274006 1931642
[2025-11-22 21:22:27] 2025-11-23 02:22:26,853 [wrapper] Test setup, not cleaning
[2025-11-22 21:22:27] 2025-11-23 02:22:26,855 [wrapper] apfmon messages muted
[2025-11-22 21:22:27] 2025-11-23 02:22:26,862 [wrapper] ==== wrapper stdout END ====
[2025-11-22 21:22:27] 2025-11-23 02:22:26,880 [wrapper] ==== wrapper stderr END ====
[2025-11-22 21:22:27]  *** Error codes and diagnostics ***
[2025-11-22 21:22:27]     "exeErrorCode": 0,
[2025-11-22 21:22:27]     "exeErrorDiag": "",
[2025-11-22 21:22:27]     "pilotErrorCode": 0,
[2025-11-22 21:22:27]     "pilotErrorDiag": "",
[2025-11-22 21:22:27]  *** Listing of results directory ***
[2025-11-22 21:22:27] total 1325848
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:00 queuedata.json
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:00 pilot3.tar.gz
[2025-11-22 21:22:27] -rwx------. 1 boincer umatlas     36292 Nov 19 03:02 runpilot2-wrapper.sh
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 21:22:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:03 run_atlas
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:03 job.xml
[2025-11-22 21:22:27] -rw-r--r--. 2 boincer umatlas 410833990 Nov 22 00:03 EVNT.47493027._000269.pool.root.1
[2025-11-22 21:22:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 22 00:03 start_atlas.sh
[2025-11-22 21:22:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:03 shared
[2025-11-22 21:22:27] -rw-r--r--. 2 boincer umatlas    590097 Nov 22 00:03 input.tar.gz
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:03 boinc_lockfile
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas      2769 Nov 22 00:03 pandaJob.out
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas    989752 Nov 22 00:03 agis_schedconf.cvmfs.json
[2025-11-22 21:22:27] drwx------. 5 boincer umatlas      4096 Nov 22 00:03 pilot3
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas       532 Nov 22 21:02 boinc_task_state.xml
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas 916085299 Nov 22 21:21 HITS.47493029._002641.pool.root.1
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas        95 Nov 22 21:21 pilot_heartbeat.json
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas      1071 Nov 22 21:21 memory_monitor_summary.json
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas   1526164 Nov 22 21:21 agis_ddmendpoints.agis.ALL.json
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas   2838898 Nov 22 21:21 log.47493029._002641.job.log.tgz.1
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas      8635 Nov 22 21:21 heartbeat.json
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas      6949 Nov 22 21:22 init_data.xml
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas        29 Nov 22 21:22 wrapper_checkpoint.txt
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas       823 Nov 22 21:22 pilotlog.txt
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas  10573204 Nov 22 21:22 log.47493029._002641.job.log.1
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 21:22 boinc_mmap_file
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas       353 Nov 22 21:22 output.list
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas       620 Nov 22 21:22 runtime_log
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas  13434880 Nov 22 21:22 result.tar.gz
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas      8706 Nov 22 21:22 runtime_log.err
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas       665 Nov 22 21:22 71tLDm1Jsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLyGKDmkU0EIn.diag
[2025-11-22 21:22:27] -rw-r--r--. 1 boincer umatlas     21397 Nov 22 21:22 stderr.txt
[2025-11-22 21:22:27] HITS file was successfully produced:
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas 916085299 Nov 22 21:21 shared/HITS.pool.root.1
[2025-11-22 21:22:27]  *** Contents of shared directory: ***
[2025-11-22 21:22:27] total 1309548
[2025-11-22 21:22:27] -rw-r--r--. 2 boincer umatlas 410833990 Nov 22 00:03 ATLAS.root_0
[2025-11-22 21:22:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 22 00:03 start_atlas.sh
[2025-11-22 21:22:27] -rw-r--r--. 2 boincer umatlas    590097 Nov 22 00:03 input.tar.gz
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas 916085299 Nov 22 21:21 HITS.pool.root.1
[2025-11-22 21:22:27] -rw-------. 1 boincer umatlas  13434880 Nov 22 21:22 result.tar.gz
21:22:29 (1924372): run_atlas exited; CPU time 233266.556239
21:22:29 (1924372): called boinc_finish(0)

</stderr_txt>
]]>

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