Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:04:49 (3032281): wrapper (7.7.26015): starting
11:04:49 (3032281): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 11:04:49] Arguments: --nthreads 8
[2025-11-22 11:04:49] Threads: 8
[2025-11-22 11:04:49] Checking for CVMFS
[2025-11-22 11:04:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 11:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 11:04:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 11:04:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 11:04:50] 2.13.3.0 11460 24507 261396 153176 2 691 29113924 32935937 34076 16776704 0 334390867 99.756 195570044 35104 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 11:04:50] CVMFS is ok
[2025-11-22 11:04:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 11:04:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 11:04:50] Further information can be found at the LHC@home message board.
[2025-11-22 11:04:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 11:04:50] Checking for apptainer binary...
[2025-11-22 11:04:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 11:04:50] Running /usr/bin/apptainer --version
[2025-11-22 11:04:50] apptainer version 1.4.4-1.el9
[2025-11-22 11:04:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 11:04:50] c7-3-34.aglt2.org
[2025-11-22 11:04:50] apptainer works
[2025-11-22 11:04:50] Set ATHENA_PROC_NUMBER=8
[2025-11-22 11:04:50] Set ATHENA_CORE_NUMBER=8
[2025-11-22 11:04:51] Starting ATLAS job with PandaID=6892528209
[2025-11-22 11:04:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:08:07]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:08:07] 2025-11-23 14:07:22,224 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:08:07] 2025-11-23 14:07:22,224 | INFO     | job 6892528209 has state=finished
[2025-11-23 09:08:07] 2025-11-23 14:07:22,224 | INFO     | preparing for final server update for job 6892528209 in state='finished'
[2025-11-23 09:08:07] 2025-11-23 14:07:22,224 | INFO     | this job has now completed (state=finished)
[2025-11-23 09:08:07] 2025-11-23 14:07:22,224 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-23 09:08:07] 2025-11-23 14:07:22,224 | INFO     | log transfer has been attempted: DONE
[2025-11-23 09:08:07] 2025-11-23 14:07:22,224 | INFO     | job 6892528209 has finished - writing final server update
[2025-11-23 09:08:07] 2025-11-23 14:07:22,225 | INFO     | total number of processed events: 1000 (read)
[2025-11-23 09:08:07] 2025-11-23 14:07:22,236 | INFO     | executing command: lscpu
[2025-11-23 09:08:07] 2025-11-23 14:07:22,319 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-23 09:08:07] 2025-11-23 14:07:25,456 | INFO     | number of running child processes to parent process 3054237: 1
[2025-11-23 09:08:07] 2025-11-23 14:07:25,456 | INFO     | maximum number of monitored processes: 16
[2025-11-23 09:08:07] 2025-11-23 14:07:28,030 | INFO     | monitor loop #4415: job 0:6892528209 is in state 'finished'
[2025-11-23 09:08:07] 2025-11-23 14:07:28,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:08:07] 2025-11-23 14:07:28,856 | INFO     | PID=3039871 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 09:08:07] 2025-11-23 14:07:28,856 | INFO     | .. there are 66 such processes running
[2025-11-23 09:08:07] 2025-11-23 14:07:29,693 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 09:08:07] 2025-11-23 14:07:29,698 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3285.8002812499985
[2025-11-23 09:08:07] 2025-11-23 14:07:29,712 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892528209/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:08:07] 2025-11-23 14:07:29,713 | INFO     | extracted standard info from prmon json
[2025-11-23 09:08:07] 2025-11-23 14:07:29,713 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:08:07] 2025-11-23 14:07:29,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:08:07] 2025-11-23 14:07:29,774 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:08:07] 2025-11-23 14:07:29,775 | INFO     | sum of square deviations: 679700162316.3318
[2025-11-23 09:08:07] 2025-11-23 14:07:29,866 | INFO     | time since job start (79315s) is within the limit (172800.0s)
[2025-11-23 09:08:07] 2025-11-23 14:07:29,877 | INFO     | sum of deviations: 35737746256925.09
[2025-11-23 09:08:07] 2025-11-23 14:07:29,877 | INFO     | mean x: 1763867209.6674366
[2025-11-23 09:08:07] 2025-11-23 14:07:29,878 | INFO     | mean y: 3794426.608929946
[2025-11-23 09:08:07] 2025-11-23 14:07:29,878 | INFO     | intersect: -92738038317.97139
[2025-11-23 09:08:07] 2025-11-23 14:07:29,879 | INFO     | chi2: 64.47393619400805
[2025-11-23 09:08:07] 2025-11-23 14:07:29,884 | INFO     | sum of square deviations: 671882471689.8773
[2025-11-23 09:08:07] 2025-11-23 14:07:29,969 | INFO     | sum of deviations: 36373982059278.266
[2025-11-23 09:08:07] 2025-11-23 14:07:29,977 | INFO     | mean x: 1763867057.1738794
[2025-11-23 09:08:07] 2025-11-23 14:07:29,977 | INFO     | mean y: 3806836.967542504
[2025-11-23 09:08:07] 2025-11-23 14:07:29,978 | INFO     | intersect: -95487400920.28532
[2025-11-23 09:08:07] 2025-11-23 14:07:29,979 | INFO     | chi2: 62.619605273484424
[2025-11-23 09:08:07] 2025-11-23 14:07:29,979 | INFO     | current chi2=62.619605273484424 (change=2.8760938605388837 %)
[2025-11-23 09:08:07] 2025-11-23 14:07:29,979 | INFO     | right removable region: 1293
[2025-11-23 09:08:07] 2025-11-23 14:07:29,980 | INFO     | sum of square deviations: 671881150429.878
[2025-11-23 09:08:07] 2025-11-23 14:07:30,073 | INFO     | sum of deviations: 35047818594021.9
[2025-11-23 09:08:07] 2025-11-23 14:07:30,073 | INFO     | mean x: 1763867362.1738794
[2025-11-23 09:08:07] 2025-11-23 14:07:30,073 | INFO     | mean y: 3807882.115919629
[2025-11-23 09:08:07] 2025-11-23 14:07:30,073 | INFO     | intersect: -92006071088.04572
[2025-11-23 09:08:07] 2025-11-23 14:07:30,082 | INFO     | chi2: 59.73536164131307
[2025-11-23 09:08:07] 2025-11-23 14:07:30,082 | INFO     | current chi2=59.73536164131307 (change=7.349597112290722 %)
[2025-11-23 09:08:07] 2025-11-23 14:07:30,083 | INFO     | left removable region: 10
[2025-11-23 09:08:07] 2025-11-23 14:07:30,084 | INFO     | sum of square deviations: 654892519525.6687
[2025-11-23 09:08:07] 2025-11-23 14:07:30,176 | INFO     | sum of deviations: 35327922318804.48
[2025-11-23 09:08:07] 2025-11-23 14:07:30,177 | INFO     | mean x: 1763867331.6874514
[2025-11-23 09:08:07] 2025-11-23 14:07:30,177 | INFO     | mean y: 3832923.856586126
[2025-11-23 09:08:07] 2025-11-23 14:07:30,177 | INFO     | intersect: -95147304425.6193
[2025-11-23 09:08:07] 2025-11-23 14:07:30,178 | INFO     | chi2: 56.08268482620555
[2025-11-23 09:08:07] 2025-11-23 14:07:30,178 | INFO     | current memory leak: 53.94 B/s (using 1283 data points, chi2=56.08)
[2025-11-23 09:08:07] 2025-11-23 14:07:30,179 | INFO     | could have reported an average CPU frequency of 3165 MHz (47 samples)
[2025-11-23 09:08:07] 2025-11-23 14:07:30,179 | INFO     | ..............................
[2025-11-23 09:08:07] 2025-11-23 14:07:30,179 | INFO     | . Timing measurements:
[2025-11-23 09:08:07] 2025-11-23 14:07:30,179 | INFO     | . get job = 0 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,179 | INFO     | . initial setup = 5 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,180 | INFO     | . payload setup = 26 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,180 | INFO     | . stage-in = 0 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,180 | INFO     | . payload execution = 79223 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,180 | INFO     | . stage-out = 12 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,180 | INFO     | . log creation = 2 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,180 | INFO     | ..............................
[2025-11-23 09:08:07] 2025-11-23 14:07:30,395 | INFO     | 
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | job summary report
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | --------------------------------------------------
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | PanDA job id: 6892528209
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | task id: 47493029
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | errors: (none)
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | pilot state: finished 
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | transexitcode: 0
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | exeerrorcode: 0
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | exeerrordiag: 
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | exitcode: 0
[2025-11-23 09:08:07] 2025-11-23 14:07:30,396 | INFO     | exitmsg: OK
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | cpuconsumptiontime: 202304 s
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | nevents: 1000
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | neventsw: 0
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | pid: 3054237
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | pgrp: 3054237
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | corecount: 8
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | event service: False
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | sizes: {0: 2298569, 1: 2298824, 12: 2298824, 16: 2299114, 23: 2299142, 79251: 2359923, 79253: 2360050, 79267: 2369100, 79269: 2369156, 79277: 2369402}
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | --------------------------------------------------
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | 
[2025-11-23 09:08:07] 2025-11-23 14:07:30,397 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 09:08:07] 2025-11-23 14:07:30,422 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,423 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | job 6892528209 has completed (purged errors)
[2025-11-23 09:08:07] 2025-11-23 14:07:30,424 | INFO     | overall cleanup function is called
[2025-11-23 09:08:07] 2025-11-23 14:07:31,440 | INFO     | --- collectZombieJob: --- 10, [3054237]
[2025-11-23 09:08:07] 2025-11-23 14:07:31,440 | INFO     | zombie collector waiting for pid 3054237
[2025-11-23 09:08:07] 2025-11-23 14:07:31,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:08:07] 2025-11-23 14:07:31,441 | INFO     | collected zombie processes
[2025-11-23 09:08:07] 2025-11-23 14:07:31,441 | INFO     | will attempt to kill all subprocesses of pid=3054237
[2025-11-23 09:08:07] 2025-11-23 14:07:34,870 | INFO     | process IDs to be killed: [3054237] (in reverse order)
[2025-11-23 09:08:07] 2025-11-23 14:07:35,092 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:08:07] 2025-11-23 14:07:35,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:08:07] 2025-11-23 14:07:35,120 | INFO     | did not find any defunct processes belonging to 3054237
[2025-11-23 09:08:07] 2025-11-23 14:07:35,148 | INFO     | did not find any defunct processes belonging to 3054237
[2025-11-23 09:08:07] 2025-11-23 14:07:35,149 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:08:07] 2025-11-23 14:07:35,149 | INFO     | ready for new job
[2025-11-23 09:08:07] 2025-11-23 14:07:35,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:08:07] 2025-11-23 14:07:35,223 | INFO     | ***************************************
[2025-11-23 09:08:07] 2025-11-23 14:07:35,223 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:08:07] 2025-11-23 14:07:35,223 | INFO     | ***************************************
[2025-11-23 09:08:07] 2025-11-23 14:07:35,223 | INFO     | 
[2025-11-23 09:08:07] 2025-11-23 14:07:35,256 | INFO     | architecture information:
[2025-11-23 09:08:07] 2025-11-23 14:07:35,294 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:08:07] 2025-11-23 14:07:35,355 | INFO     | cat /etc/os-release:
[2025-11-23 09:08:07] NAME="CentOS Linux"
[2025-11-23 09:08:07] VERSION="7 (Core)"
[2025-11-23 09:08:07] ID="centos"
[2025-11-23 09:08:07] ID_LIKE="rhel fedora"
[2025-11-23 09:08:07] VERSION_ID="7"
[2025-11-23 09:08:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:08:07] ANSI_COLOR="0;31"
[2025-11-23 09:08:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:08:07] HOME_URL="https://www.centos.org/"
[2025-11-23 09:08:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:08:07] 
[2025-11-23 09:08:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:08:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:08:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:08:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:08:07] 
[2025-11-23 09:08:07] 2025-11-23 14:07:35,355 | INFO     | ***************************************
[2025-11-23 09:08:07] 2025-11-23 14:07:35,858 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 09:08:07] 2025-11-23 14:07:35,932 | INFO     | sufficient remaining disk space (69701992448 B)
[2025-11-23 09:08:07] 2025-11-23 14:07:35,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:08:07] 2025-11-23 14:07:35,932 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:08:07] 2025-11-23 14:07:35,932 | INFO     | update_server=False
[2025-11-23 09:08:07] 2025-11-23 14:07:35,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:08:07] 2025-11-23 14:07:35,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:08:07] 2025-11-23 14:07:35,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:08:07] 2025-11-23 14:07:35,937 | INFO     | all data control threads have been joined
[2025-11-23 09:08:07] 2025-11-23 14:07:36,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:08:07] 2025-11-23 14:07:36,654 | INFO     | aborting loop
[2025-11-23 09:08:07] 2025-11-23 14:07:36,943 | INFO     | [data] control thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:36,951 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:36,952 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:37,120 | INFO     | all job control threads have been joined
[2025-11-23 09:08:07] 2025-11-23 14:07:37,360 | INFO     | all payload control threads have been joined
[2025-11-23 09:08:07] 2025-11-23 14:07:37,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:08:07] 2025-11-23 14:07:37,662 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:37,735 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:37,736 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:37,894 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:37,914 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:37,952 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:38,126 | INFO     | [job] control thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:38,161 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:38,162 | INFO     | [job] validate thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:38,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:38,184 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:38,366 | INFO     | [payload] control thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:41,464 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:08:07] 2025-11-23 14:07:56,934 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:08:07] 2025-11-23 14:07:57,940 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671286986560)>', '<ExcThread(monitor, started 140670941505280)>']
[2025-11-23 09:08:07] 2025-11-23 14:08:02,991 | INFO     | all workflow threads have been joined
[2025-11-23 09:08:07] 2025-11-23 14:08:03,013 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:08:07] 2025-11-23 14:08:03,014 | INFO     | traces error code: 0
[2025-11-23 09:08:07] 2025-11-23 14:08:03,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:08:07] 2025-11-23 14:08:05,939 | INFO     | PID=3039871 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 09:08:07] 2025-11-23 14:08:05,940 | INFO     | .. there are 66 such processes running
[2025-11-23 09:08:07] 2025-11-23 14:08:05,940 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:08:07] 2025-11-23 14:08:05,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:08:07] 2025-11-23 14:08:05,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:08:07] 2025-11-23 14:08:05,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:08:07] 2025-11-23 14:08:05,940 | INFO     | [monitor] control thread has ended
[2025-11-23 09:08:07] 2025-11-23 14:08:07,017 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:08:07] 2025-11-23 14:08:07,024 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:08:07] 2025-11-23 14:08:07,027 [wrapper] pilotpid: 3039871
[2025-11-23 09:08:07] 2025-11-23 14:08:07,030 [wrapper] Pilot exit status: 0
[2025-11-23 09:08:07] 2025-11-23 14:08:07,041 [wrapper] pandaids: 6892528209
[2025-11-23 09:08:07] 2025-11-23 14:08:07,179 [wrapper] cleanup supervisor_pilot 1747812 3039872
[2025-11-23 09:08:07] 2025-11-23 14:08:07,181 [wrapper] Test setup, not cleaning
[2025-11-23 09:08:07] 2025-11-23 14:08:07,194 [wrapper] apfmon messages muted
[2025-11-23 09:08:07] 2025-11-23 14:08:07,196 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:08:07] 2025-11-23 14:08:07,199 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:08:07]  *** Error codes and diagnostics ***
[2025-11-23 09:08:07]     "exeErrorCode": 0,
[2025-11-23 09:08:07]     "exeErrorDiag": "",
[2025-11-23 09:08:07]     "pilotErrorCode": 0,
[2025-11-23 09:08:07]     "pilotErrorDiag": "",
[2025-11-23 09:08:07]  *** Listing of results directory ***
[2025-11-23 09:08:07] total 1326052
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:12 queuedata.json
[2025-11-23 09:08:07] -rwx------. 1 boincer umatlas     36292 Nov 19 02:13 runpilot2-wrapper.sh
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas       100 Nov 22 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:08:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 11:04 run_atlas
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas       105 Nov 22 11:04 job.xml
[2025-11-23 09:08:07] -rw-r--r--. 2 boincer umatlas 408848305 Nov 22 11:04 EVNT.47493027._000153.pool.root.1
[2025-11-23 09:08:07] -rw-r--r--. 2 boincer umatlas     15120 Nov 22 11:04 start_atlas.sh
[2025-11-23 09:08:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 11:04 shared
[2025-11-23 09:08:07] -rw-r--r--. 2 boincer umatlas    590098 Nov 22 11:04 input.tar.gz
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas         0 Nov 22 11:04 boinc_lockfile
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas      2773 Nov 22 11:04 pandaJob.out
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas    989768 Nov 22 11:05 agis_schedconf.cvmfs.json
[2025-11-23 09:08:07] drwx------. 5 boincer umatlas      4096 Nov 22 11:05 pilot3
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas       533 Nov 23 08:56 boinc_task_state.xml
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas      6947 Nov 23 09:03 init_data.xml
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas 921274015 Nov 23 09:06 HITS.47493029._001485.pool.root.1
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas      1075 Nov 23 09:07 memory_monitor_summary.json
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas   1526164 Nov 23 09:07 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas   2342408 Nov 23 09:07 log.47493029._001485.job.log.tgz.1
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas        95 Nov 23 09:07 pilot_heartbeat.json
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas      8640 Nov 23 09:07 heartbeat.json
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 09:08 boinc_mmap_file
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas        29 Nov 23 09:08 wrapper_checkpoint.txt
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas       823 Nov 23 09:08 pilotlog.txt
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas   9572932 Nov 23 09:08 log.47493029._001485.job.log.1
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas       353 Nov 23 09:08 output.list
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas       620 Nov 23 09:08 runtime_log
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas  11939840 Nov 23 09:08 result.tar.gz
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas      8699 Nov 23 09:08 runtime_log.err
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas       666 Nov 23 09:08 NvtNDmQYrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmamGKDmXYkv6m.diag
[2025-11-23 09:08:07] -rw-r--r--. 1 boincer umatlas     21898 Nov 23 09:08 stderr.txt
[2025-11-23 09:08:07] HITS file was successfully produced:
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas 921274015 Nov 23 09:06 shared/HITS.pool.root.1
[2025-11-23 09:08:07]  *** Contents of shared directory: ***
[2025-11-23 09:08:07] total 1311216
[2025-11-23 09:08:07] -rw-r--r--. 2 boincer umatlas 408848305 Nov 22 11:04 ATLAS.root_0
[2025-11-23 09:08:07] -rw-r--r--. 2 boincer umatlas     15120 Nov 22 11:04 start_atlas.sh
[2025-11-23 09:08:07] -rw-r--r--. 2 boincer umatlas    590098 Nov 22 11:04 input.tar.gz
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas 921274015 Nov 23 09:06 HITS.pool.root.1
[2025-11-23 09:08:07] -rw-------. 1 boincer umatlas  11939840 Nov 23 09:08 result.tar.gz
09:08:08 (3032281): run_atlas exited; CPU time 203897.529639
09:08:08 (3032281): called boinc_finish(0)

</stderr_txt>
]]>

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