Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:04:57 (16688): wrapper (7.7.26015): starting
22:04:57 (16688): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:04:57] Arguments: --nthreads 8
[2025-11-24 22:04:57] Threads: 8
[2025-11-24 22:04:57] Checking for CVMFS
[2025-11-24 22:04:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:04:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:04:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:05:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:05:01] 2.11.2.0 16655 282844 137836 153258 0 85 16507416 25165824 4632 130560 10 133481634 99.868 76427349 2777 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 22:05:01] CVMFS is ok
[2025-11-24 22:05:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:05:01] Checking for apptainer binary...
[2025-11-24 22:05:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:05:01] Running /usr/bin/apptainer --version
[2025-11-24 22:05:01] apptainer version 1.3.2-1.el7
[2025-11-24 22:05:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:05:15] cg-vwn423.simple-grid.lan
[2025-11-24 22:05:15] apptainer works
[2025-11-24 22:05:15] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:05:15] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:05:15] Starting ATLAS job with PandaID=6891478756
[2025-11-24 22:05:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:59:18]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:59:18] 2025-11-25 22:58:29,306 | INFO     | monitor loop #6227: job 0:6891478756 is in state 'finished'
[2025-11-25 23:59:18] 2025-11-25 22:58:29,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:59:18] 2025-11-25 22:58:29,598 | INFO     | time since job start (92968s) is within the limit (172800.0s)
[2025-11-25 23:59:18] 2025-11-25 22:58:30,770 | INFO     | PID=20499 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:59:18] 2025-11-25 22:58:30,771 | INFO     | .. there are 9 such processes running
[2025-11-25 23:59:18] 2025-11-25 22:58:31,777 | INFO     | time since job start (92970s) is within the limit (172800.0s)
[2025-11-25 23:59:18] 2025-11-25 22:58:31,820 | INFO     | monitor loop #6228: job 0:6891478756 is in state 'finished'
[2025-11-25 23:59:18] 2025-11-25 22:58:31,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:59:18] 2025-11-25 22:58:33,785 | INFO     | time since job start (92972s) is within the limit (172800.0s)
[2025-11-25 23:59:18] 2025-11-25 22:58:34,327 | INFO     | monitor loop #6229: job 0:6891478756 is in state 'finished'
[2025-11-25 23:59:18] 2025-11-25 22:58:34,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:59:18] 2025-11-25 22:58:35,792 | INFO     | time since job start (92974s) is within the limit (172800.0s)
[2025-11-25 23:59:18] 2025-11-25 22:58:36,835 | INFO     | monitor loop #6230: job 0:6891478756 is in state 'finished'
[2025-11-25 23:59:18] 2025-11-25 22:58:36,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:59:18] 2025-11-25 22:58:37,801 | INFO     | time since job start (92976s) is within the limit (172800.0s)
[2025-11-25 23:59:18] 2025-11-25 22:58:38,906 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:59:18] 2025-11-25 22:58:38,907 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 23:59:18] 2025-11-25 22:58:38,909 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891478756/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:59:18] 2025-11-25 22:58:38,909 | INFO     | extracted standard info from prmon json
[2025-11-25 23:59:18] 2025-11-25 22:58:38,910 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:59:18] 2025-11-25 22:58:38,910 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:59:18] 2025-11-25 22:58:38,960 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:59:18] 2025-11-25 22:58:38,962 | INFO     | sum of square deviations: 1078243011963.3229
[2025-11-25 23:59:18] 2025-11-25 22:58:39,048 | INFO     | sum of deviations: 4039389460967.441
[2025-11-25 23:59:18] 2025-11-25 22:58:39,048 | INFO     | mean x: 1764065211.330693
[2025-11-25 23:59:18] 2025-11-25 22:58:39,048 | INFO     | mean y: 2837400.7755775577
[2025-11-25 23:59:18] 2025-11-25 22:58:39,048 | INFO     | intersect: -6605827198.991742
[2025-11-25 23:59:18] 2025-11-25 22:58:39,050 | INFO     | chi2: 26.000839357375156
[2025-11-25 23:59:18] 2025-11-25 22:58:39,052 | INFO     | sum of square deviations: 1067603157561.9402
[2025-11-25 23:59:18] 2025-11-25 22:58:39,128 | INFO     | sum of deviations: 4530369065305.588
[2025-11-25 23:59:18] 2025-11-25 22:58:39,128 | INFO     | mean x: 1764065058.8350992
[2025-11-25 23:59:18] 2025-11-25 22:58:39,128 | INFO     | mean y: 2844436.464238411
[2025-11-25 23:59:18] 2025-11-25 22:58:39,129 | INFO     | intersect: -7482957488.273272
[2025-11-25 23:59:18] 2025-11-25 22:58:39,130 | INFO     | chi2: 22.904367427887188
[2025-11-25 23:59:18] 2025-11-25 22:58:39,131 | INFO     | current chi2=22.904367427887188 (change=11.909122959177285 %)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,131 | INFO     | right removable region: 1509
[2025-11-25 23:59:18] 2025-11-25 22:58:39,133 | INFO     | sum of square deviations: 1067601927801.9407
[2025-11-25 23:59:18] 2025-11-25 22:58:39,195 | INFO     | sum of deviations: 3391405223250.1934
[2025-11-25 23:59:18] 2025-11-25 22:58:39,195 | INFO     | mean x: 1764065363.8350992
[2025-11-25 23:59:18] 2025-11-25 22:58:39,195 | INFO     | mean y: 2846687.241721854
[2025-11-25 23:59:18] 2025-11-25 22:58:39,196 | INFO     | intersect: -5600984041.4856615
[2025-11-25 23:59:18] 2025-11-25 22:58:39,197 | INFO     | chi2: 21.03764671415301
[2025-11-25 23:59:18] 2025-11-25 22:58:39,198 | INFO     | current chi2=21.03764671415301 (change=19.088586237560573 %)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,198 | INFO     | left removable region: 10
[2025-11-25 23:59:18] 2025-11-25 22:58:39,200 | INFO     | sum of square deviations: 1044439914150.688
[2025-11-25 23:59:18] 2025-11-25 22:58:39,270 | INFO     | sum of deviations: 3401491904456.433
[2025-11-25 23:59:18] 2025-11-25 22:58:39,271 | INFO     | mean x: 1764065333.3448966
[2025-11-25 23:59:18] 2025-11-25 22:58:39,271 | INFO     | mean y: 2863869.782521681
[2025-11-25 23:59:18] 2025-11-25 22:58:39,271 | INFO     | intersect: -5742276534.1863575
[2025-11-25 23:59:18] 2025-11-25 22:58:39,273 | INFO     | chi2: 13.204042207526639
[2025-11-25 23:59:18] 2025-11-25 22:58:39,273 | INFO     | current memory leak: 3.26 B/s (using 1499 data points, chi2=13.20)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,275 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | ..............................
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . Timing measurements:
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . get job = 0 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . initial setup = 10 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . payload setup = 154 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . stage-in = 0 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . payload execution = 92530 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . stage-out = 5 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,276 | INFO     | . log creation = 2 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,277 | INFO     | ..............................
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | 
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | job summary report
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | --------------------------------------------------
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | PanDA job id: 6891478756
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | task id: 47493049
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | errors: (none)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:59:18] 2025-11-25 22:58:39,396 | INFO     | pilot state: finished 
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | transexitcode: 0
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | exeerrorcode: 0
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | exeerrordiag: 
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | exitcode: 0
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | exitmsg: OK
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | cpuconsumptiontime: 346901 s
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | nevents: 1000
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | neventsw: 0
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | pid: 26985
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | pgrp: 26985
[2025-11-25 23:59:18] 2025-11-25 22:58:39,397 | INFO     | corecount: 8
[2025-11-25 23:59:18] 2025-11-25 22:58:39,398 | INFO     | event service: False
[2025-11-25 23:59:18] 2025-11-25 22:58:39,398 | INFO     | sizes: {0: 2284064, 1: 2284319, 12: 2284319, 23: 2284347, 34: 2284375, 44: 2284403, 55: 2284559, 66: 2284587, 76: 2284615, 87: 2284671, 94: 2284961, 98: 2285269, 9
[2025-11-25 23:59:18] 2025-11-25 22:58:39,398 | INFO     | --------------------------------------------------
[2025-11-25 23:59:18] 2025-11-25 22:58:39,398 | INFO     | 
[2025-11-25 23:59:18] 2025-11-25 22:58:39,398 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 23:59:18] 2025-11-25 22:58:39,808 | INFO     | time since job start (92978s) is within the limit (172800.0s)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,857 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,859 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:59:18] 2025-11-25 22:58:39,860 | INFO     | job 6891478756 has completed (purged errors)
[2025-11-25 23:59:18] 2025-11-25 22:58:39,860 | INFO     | overall cleanup function is called
[2025-11-25 23:59:18] 2025-11-25 22:58:40,882 | INFO     | --- collectZombieJob: --- 10, [26985]
[2025-11-25 23:59:18] 2025-11-25 22:58:40,882 | INFO     | zombie collector waiting for pid 26985
[2025-11-25 23:59:18] 2025-11-25 22:58:40,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:59:18] 2025-11-25 22:58:40,883 | INFO     | collected zombie processes
[2025-11-25 23:59:18] 2025-11-25 22:58:40,883 | INFO     | will attempt to kill all subprocesses of pid=26985
[2025-11-25 23:59:18] 2025-11-25 22:58:41,031 | INFO     | process IDs to be killed: [26985] (in reverse order)
[2025-11-25 23:59:18] 2025-11-25 22:58:41,698 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:59:18] 2025-11-25 22:58:41,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:59:18] 2025-11-25 22:58:41,701 | INFO     | did not find any defunct processes belonging to 26985
[2025-11-25 23:59:18] 2025-11-25 22:58:41,705 | INFO     | did not find any defunct processes belonging to 26985
[2025-11-25 23:59:18] 2025-11-25 22:58:41,766 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:59:18] 2025-11-25 22:58:41,766 | INFO     | ready for new job
[2025-11-25 23:59:18] 2025-11-25 22:58:41,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:59:18] 2025-11-25 22:58:41,773 | INFO     | ***************************************
[2025-11-25 23:59:18] 2025-11-25 22:58:41,774 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:59:18] 2025-11-25 22:58:41,774 | INFO     | ***************************************
[2025-11-25 23:59:18] 2025-11-25 22:58:41,774 | INFO     | 
[2025-11-25 23:59:18] 2025-11-25 22:58:41,774 | INFO     | pilot is running in a VM
[2025-11-25 23:59:18] 2025-11-25 22:58:41,774 | INFO     | architecture information:
[2025-11-25 23:59:18] 2025-11-25 22:58:41,775 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:59:18] 2025-11-25 22:58:41,890 | INFO     | cat /etc/os-release:
[2025-11-25 23:59:18] NAME="CentOS Linux"
[2025-11-25 23:59:18] VERSION="7 (Core)"
[2025-11-25 23:59:18] ID="centos"
[2025-11-25 23:59:18] ID_LIKE="rhel fedora"
[2025-11-25 23:59:18] VERSION_ID="7"
[2025-11-25 23:59:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:59:18] ANSI_COLOR="0;31"
[2025-11-25 23:59:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:59:18] HOME_URL="https://www.centos.org/"
[2025-11-25 23:59:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:59:18] 
[2025-11-25 23:59:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:59:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:59:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:59:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:59:18] 
[2025-11-25 23:59:18] 2025-11-25 22:58:41,891 | INFO     | ***************************************
[2025-11-25 23:59:18] 2025-11-25 22:58:42,394 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 23:59:18] 2025-11-25 22:58:42,607 | INFO     | sufficient remaining disk space (494639513600 B)
[2025-11-25 23:59:18] 2025-11-25 22:58:42,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:59:18] 2025-11-25 22:58:42,608 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:59:18] 2025-11-25 22:58:42,608 | INFO     | update_server=False
[2025-11-25 23:59:18] 2025-11-25 22:58:42,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:59:18] 2025-11-25 22:58:42,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:59:18] 2025-11-25 22:58:42,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:59:18] 2025-11-25 22:58:42,862 | INFO     | aborting loop
[2025-11-25 23:59:18] 2025-11-25 22:58:42,966 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:59:18] 2025-11-25 22:58:43,005 | INFO     | all job control threads have been joined
[2025-11-25 23:59:18] 2025-11-25 22:58:43,258 | INFO     | all data control threads have been joined
[2025-11-25 23:59:18] 2025-11-25 22:58:43,491 | INFO     | all payload control threads have been joined
[2025-11-25 23:59:18] 2025-11-25 22:58:43,613 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:43,623 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:43,868 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:43,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,011 | INFO     | [job] control thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,264 | INFO     | [data] control thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,301 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:59:18] 2025-11-25 22:58:44,496 | INFO     | [job] validate thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,497 | INFO     | [payload] control thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,585 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:59:18] 2025-11-25 22:58:44,616 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,750 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:44,950 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:45,171 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:45,418 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:48,624 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:59:18] 2025-11-25 22:58:50,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698711914304)>', '<ExcThread(monitor, started 139698274023168)>']
[2025-11-25 23:59:18] 2025-11-25 22:58:55,423 | INFO     | all workflow threads have been joined
[2025-11-25 23:59:18] 2025-11-25 22:58:55,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:59:18] 2025-11-25 22:58:55,423 | INFO     | traces error code: 0
[2025-11-25 23:59:18] 2025-11-25 22:58:55,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:59:18] 2025-11-25 22:59:13,042 | INFO     | PID=20499 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:59:18] 2025-11-25 22:59:13,042 | INFO     | .. there are 9 such processes running
[2025-11-25 23:59:18] 2025-11-25 22:59:13,043 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:59:18] 2025-11-25 22:59:13,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:59:18] 2025-11-25 22:59:13,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:59:18] 2025-11-25 22:59:13,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:59:18] 2025-11-25 22:59:13,051 | INFO     | [monitor] control thread has ended
[2025-11-25 23:59:18] 2025-11-25 22:59:13,605 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:59:18] 2025-11-25 22:59:13,704 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:59:18] 2025-11-25 22:59:13,826 [wrapper] pilotpid: 20499
[2025-11-25 23:59:18] 2025-11-25 22:59:13,947 [wrapper] Pilot exit status: 0
[2025-11-25 23:59:18] 2025-11-25 22:59:14,312 [wrapper] pandaids: 6891478756
[2025-11-25 23:59:18] 2025-11-25 22:59:15,349 [wrapper] cleanup supervisor_pilot 15855 20500
[2025-11-25 23:59:18] 2025-11-25 22:59:15,470 [wrapper] Test setup, not cleaning
[2025-11-25 23:59:18] 2025-11-25 22:59:15,570 [wrapper] apfmon messages muted
[2025-11-25 23:59:18] 2025-11-25 22:59:15,678 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:59:18] 2025-11-25 22:59:15,741 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:59:18]  *** Error codes and diagnostics ***
[2025-11-25 23:59:18]     "exeErrorCode": 0,
[2025-11-25 23:59:18]     "exeErrorDiag": "",
[2025-11-25 23:59:18]     "pilotErrorCode": 0,
[2025-11-25 23:59:18]     "pilotErrorDiag": "",
[2025-11-25 23:59:18]  *** Listing of results directory ***
[2025-11-25 23:59:18] total 1339052
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc    576529 Nov 18 13:21 pilot3.tar.gz
[2025-11-25 23:59:18] -rwx------. 1 boinc boinc     36292 Nov 18 13:54 runpilot2-wrapper.sh
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc      5112 Nov 18 13:54 queuedata.json
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:59:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:04 run_atlas
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:04 job.xml
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc      6392 Nov 24 22:04 init_data.xml
[2025-11-25 23:59:18] -rw-r--r--. 2 boinc boinc 411251585 Nov 24 22:04 EVNT.47493047._000002.pool.root.1
[2025-11-25 23:59:18] -rw-r--r--. 2 boinc boinc     15120 Nov 24 22:04 start_atlas.sh
[2025-11-25 23:59:18] drwxrwx--x. 2 boinc boinc        68 Nov 24 22:04 shared
[2025-11-25 23:59:18] -rw-r--r--. 2 boinc boinc    590096 Nov 24 22:04 input.tar.gz
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:04 boinc_lockfile
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc      2769 Nov 24 22:05 pandaJob.out
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc    991801 Nov 24 22:08 agis_schedconf.cvmfs.json
[2025-11-25 23:59:18] drwx------. 5 boinc boinc      4096 Nov 24 22:09 pilot3
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc       533 Nov 25 23:33 boinc_task_state.xml
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc 926133550 Nov 25 23:55 HITS.47493049._000014.pool.root.1
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc      1029 Nov 25 23:56 memory_monitor_summary.json
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc   1516240 Nov 25 23:56 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc   2573950 Nov 25 23:56 log.47493049._000014.job.log.tgz.1
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc      7939 Nov 25 23:58 heartbeat.json
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc        95 Nov 25 23:59 pilot_heartbeat.json
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc       820 Nov 25 23:59 pilotlog.txt
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc        29 Nov 25 23:59 wrapper_checkpoint.txt
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc      8192 Nov 25 23:59 boinc_mmap_file
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc  12379188 Nov 25 23:59 log.47493049._000014.job.log.1
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc       353 Nov 25 23:59 output.list
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc       620 Nov 25 23:59 runtime_log
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc  14970880 Nov 25 23:59 result.tar.gz
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc      8703 Nov 25 23:59 runtime_log.err
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc       662 Nov 25 23:59 2fHLDmPPaf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjBFKDm3wCM3m.diag
[2025-11-25 23:59:18] -rw-r--r--. 1 boinc boinc     21509 Nov 25 23:59 stderr.txt
[2025-11-25 23:59:18] HITS file was successfully produced:
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc 926133550 Nov 25 23:55 shared/HITS.pool.root.1
[2025-11-25 23:59:18]  *** Contents of shared directory: ***
[2025-11-25 23:59:18] total 1321260
[2025-11-25 23:59:18] -rw-r--r--. 2 boinc boinc 411251585 Nov 24 22:04 ATLAS.root_0
[2025-11-25 23:59:18] -rw-r--r--. 2 boinc boinc     15120 Nov 24 22:04 start_atlas.sh
[2025-11-25 23:59:18] -rw-r--r--. 2 boinc boinc    590096 Nov 24 22:04 input.tar.gz
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc 926133550 Nov 25 23:55 HITS.pool.root.1
[2025-11-25 23:59:18] -rw-------. 1 boinc boinc  14970880 Nov 25 23:59 result.tar.gz
23:59:20 (16688): run_atlas exited; CPU time 347432.883287
23:59:20 (16688): called boinc_finish(0)

</stderr_txt>
]]>

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