Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:19:10 (18077): wrapper (7.7.26015): starting
09:19:10 (18077): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 09:19:10] Arguments: --nthreads 12
[2025-11-22 09:19:10] Threads: 12
[2025-11-22 09:19:10] Checking for CVMFS
[2025-11-22 09:19:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 09:19:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 09:19:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 09:19:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 09:19:17] 2.13.3.0 5957 951 105508 153166 0 80 4647771 102400000 700 130560 29 4023189 99.995 40625 8 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 09:19:17] CVMFS is ok
[2025-11-22 09:19:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:19:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:19:17] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 09:19:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 09:19:17] Further information can be found at the LHC@home message board.
[2025-11-22 09:19:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:19:17] Checking for apptainer binary...
[2025-11-22 09:19:17] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 09:19:17] apptainer is not installed, using version from CVMFS
[2025-11-22 09:19:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:19:17] crocidura-russula
[2025-11-22 09:19:17] apptainer works
[2025-11-22 09:19:17] Set ATHENA_PROC_NUMBER=12
[2025-11-22 09:19:17] Set ATHENA_CORE_NUMBER=12
[2025-11-22 09:19:17] Starting ATLAS job with PandaID=6895328929
[2025-11-22 09:19:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 09:54:45]  *** The last 200 lines of the pilot log: ***
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | chi2: 0.0016588095283639852
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | current memory leak: 63.07 B/s (using 23 data points, chi2=0.00)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | could have reported an average CPU frequency of 3555 MHz (5 samples)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | ..............................
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . Timing measurements:
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . get job = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . initial setup = 15 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . payload setup = 2 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . stage-in = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . payload execution = 1821 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . stage-out = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . log creation = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | ..............................
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/0/PanDA_Pilot-6895328929/pilotlog.txt
[2025-11-22 09:54:45] 2025-11-22 09:53:57,252 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 09:54:45] - Log from pilotlog.txt -
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | sum of square deviations: 3765652.0
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | sum of deviations: 237485993.00000003
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | mean x: 1763804170.0
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | mean y: 761910.5652173914
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | intersect: -111235960115.25949
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | chi2: 0.0016588095283639852
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | current memory leak: 63.07 B/s (using 23 data points, chi2=0.00)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | could have reported an average CPU frequency of 3555 MHz (5 samples)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | ..............................
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . Timing measurements:
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . get job = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . initial setup = 15 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . payload setup = 2 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . stage-in = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . payload execution = 1821 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . stage-out = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . log creation = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | ..............................
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/0/PanDA_Pilot-6895328929/pilotlog.txt
[2025-11-22 09:54:45] 2025-11-22 09:53:57,253 | WARNING  | 
[2025-11-22 09:54:45] [begin log extracts]
[2025-11-22 09:54:45] - Log from pilotlog.txt -
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | sum of square deviations: 3765652.0
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | sum of deviations: 237485993.00000003
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | mean x: 1763804170.0
[2025-11-22 09:54:45] 2025-11-22 09:53:57,245 | INFO     | mean y: 761910.5652173914
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | intersect: -111235960115.25949
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | chi2: 0.0016588095283639852
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | current memory leak: 63.07 B/s (using 23 data points, chi2=0.00)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | could have reported an average CPU frequency of 3555 MHz (5 samples)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | ..............................
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . Timing measurements:
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . get job = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . initial setup = 15 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . payload setup = 2 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . stage-in = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . payload execution = 1821 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . stage-out = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | . log creation = 0 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | ..............................
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 09:54:45] 2025-11-22 09:53:57,246 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/0/PanDA_Pilot-6895328929/pilotlog.txt
[2025-11-22 09:54:45] [end log extracts]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,253 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,253 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | 
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | job summary report
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | --------------------------------------------------
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | PanDA job id: 6895328929
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | task id: 47556137
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 09:50:09,294 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | pilot state: failed 
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | transexitcode: 65
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | exeerrorcode: 65
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current
[2025-11-22 09:54:45] 2025-11-22 09:53:57,284 | INFO     | exitcode: 65
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algo
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | cpuconsumptiontime: 34 s
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | nevents: 0
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | neventsw: 0
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | pid: 36760
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | pgrp: 36760
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | corecount: 12
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | event service: False
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | sizes: {0: 2298751, 2: 2299013, 11: 2299041, 1827: 2323366, 1828: 2327718, 1831: 2327718, 2048: 2328072}
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | --------------------------------------------------
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | 
[2025-11-22 09:54:45] 2025-11-22 09:53:57,285 | INFO     | executing command: ls -lF /virtma/boinc/slots/0
[2025-11-22 09:54:45] 2025-11-22 09:53:57,295 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | job 6895328929 has completed (purged errors)
[2025-11-22 09:54:45] 2025-11-22 09:53:57,296 | INFO     | overall cleanup function is called
[2025-11-22 09:54:45] 2025-11-22 09:53:58,302 | INFO     | --- collectZombieJob: --- 10, [36760]
[2025-11-22 09:54:45] 2025-11-22 09:53:58,303 | INFO     | zombie collector waiting for pid 36760
[2025-11-22 09:54:45] 2025-11-22 09:53:58,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 09:54:45] 2025-11-22 09:53:58,303 | INFO     | collected zombie processes
[2025-11-22 09:54:45] 2025-11-22 09:53:58,303 | INFO     | will attempt to kill all subprocesses of pid=36760
[2025-11-22 09:54:45] 2025-11-22 09:53:58,392 | INFO     | process IDs to be killed: [36760] (in reverse order)
[2025-11-22 09:54:45] 2025-11-22 09:53:58,423 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 09:54:45] 2025-11-22 09:53:58,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 09:54:45] 2025-11-22 09:53:58,425 | INFO     | did not find any defunct processes belonging to 36760
[2025-11-22 09:54:45] 2025-11-22 09:53:58,427 | INFO     | did not find any defunct processes belonging to 36760
[2025-11-22 09:54:45] 2025-11-22 09:53:58,428 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 09:54:45] 2025-11-22 09:53:58,428 | INFO     | ready for new job
[2025-11-22 09:54:45] 2025-11-22 09:53:58,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 09:54:45] 2025-11-22 09:53:58,429 | INFO     | ***************************************
[2025-11-22 09:54:45] 2025-11-22 09:53:58,429 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 09:54:45] 2025-11-22 09:53:58,429 | INFO     | ***************************************
[2025-11-22 09:54:45] 2025-11-22 09:53:58,429 | INFO     | 
[2025-11-22 09:54:45] 2025-11-22 09:53:58,430 | INFO     | architecture information:
[2025-11-22 09:54:45] 2025-11-22 09:53:58,430 | INFO     | executing command: cat /etc/os-release
[2025-11-22 09:54:45] 2025-11-22 09:53:58,436 | INFO     | cat /etc/os-release:
[2025-11-22 09:54:45] NAME="CentOS Linux"
[2025-11-22 09:54:45] VERSION="7 (Core)"
[2025-11-22 09:54:45] ID="centos"
[2025-11-22 09:54:45] ID_LIKE="rhel fedora"
[2025-11-22 09:54:45] VERSION_ID="7"
[2025-11-22 09:54:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 09:54:45] ANSI_COLOR="0;31"
[2025-11-22 09:54:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 09:54:45] HOME_URL="https://www.centos.org/"
[2025-11-22 09:54:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 09:54:45] 
[2025-11-22 09:54:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 09:54:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 09:54:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 09:54:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 09:54:45] 
[2025-11-22 09:54:45] 2025-11-22 09:53:58,436 | INFO     | ***************************************
[2025-11-22 09:54:45] 2025-11-22 09:53:58,939 | INFO     | executing command: df -mP /virtma/boinc/slots/0
[2025-11-22 09:54:45] 2025-11-22 09:53:58,946 | INFO     | sufficient remaining disk space (956757442560 B)
[2025-11-22 09:54:45] 2025-11-22 09:53:58,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 09:54:45] 2025-11-22 09:53:58,947 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 09:54:45] 2025-11-22 09:53:58,947 | INFO     | update_server=False
[2025-11-22 09:54:45] 2025-11-22 09:53:58,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 09:54:45] 2025-11-22 09:53:58,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:54:45] 2025-11-22 09:53:58,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 09:54:45] 2025-11-22 09:53:59,674 | INFO     | all data control threads have been joined
[2025-11-22 09:54:45] 2025-11-22 09:53:59,701 | INFO     | all payload control threads have been joined
[2025-11-22 09:54:45] 2025-11-22 09:53:59,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:54:45] 2025-11-22 09:53:59,843 | INFO     | aborting loop
[2025-11-22 09:54:45] 2025-11-22 09:53:59,952 | INFO     | [job] retrieve thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:53:59,952 | INFO     | [job] queue monitor thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,034 | INFO     | [payload] validate_post thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 09:54:45] 2025-11-22 09:54:00,455 | INFO     | all job control threads have been joined
[2025-11-22 09:54:45] 2025-11-22 09:54:00,582 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,583 | INFO     | [payload] failed_post thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,642 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,674 | INFO     | [job] validate thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,679 | INFO     | [data] control thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,706 | INFO     | [payload] control thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:00,848 | INFO     | [job] job monitor thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:01,034 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:01,067 | INFO     | [data] copytool_in thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:01,320 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:01,460 | INFO     | [job] control thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:02,418 | INFO     | [data] copytool_out thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:02,952 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 09:54:45] 2025-11-22 09:54:28,643 | INFO     | PID=23865 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 09:54:45] 2025-11-22 09:54:28,643 | INFO     | .. there are 3 such processes running
[2025-11-22 09:54:45] 2025-11-22 09:54:28,643 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 09:54:45] 2025-11-22 09:54:28,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 09:54:45] 2025-11-22 09:54:28,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 09:54:45] 2025-11-22 09:54:39,254 | INFO     | [monitor] cgroup control has ended
[2025-11-22 09:54:45] 2025-11-22 09:54:40,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140427471783744)>', '<ExcThread(monitor, started 140427067893504)>']
[2025-11-22 09:54:45] 2025-11-22 09:54:40,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 09:54:45] 2025-11-22 09:54:40,698 | INFO     | [monitor] control thread has ended
[2025-11-22 09:54:45] 2025-11-22 09:54:45,324 | INFO     | all workflow threads have been joined
[2025-11-22 09:54:45] 2025-11-22 09:54:45,324 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 09:54:45] 2025-11-22 09:54:45,324 | INFO     | traces error code: 0
[2025-11-22 09:54:45] 2025-11-22 09:54:45,325 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 09:54:45] 2025-11-22 09:54:45,364 [wrapper] ==== pilot stdout END ====
[2025-11-22 09:54:45] 2025-11-22 09:54:45,366 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 09:54:45] 2025-11-22 09:54:45,367 [wrapper] pilotpid: 23865
[2025-11-22 09:54:45] 2025-11-22 09:54:45,368 [wrapper] Pilot exit status: 0
[2025-11-22 09:54:45] 2025-11-22 09:54:45,373 [wrapper] pandaids: 6895328929
[2025-11-22 09:54:45] 2025-11-22 09:54:45,390 [wrapper] cleanup supervisor_pilot  5655 23866
[2025-11-22 09:54:45] 2025-11-22 09:54:45,391 [wrapper] Test setup, not cleaning
[2025-11-22 09:54:45] 2025-11-22 09:54:45,392 [wrapper] apfmon messages muted
[2025-11-22 09:54:45] 2025-11-22 09:54:45,394 [wrapper] ==== wrapper stdout END ====
[2025-11-22 09:54:45] 2025-11-22 09:54:45,395 [wrapper] ==== wrapper stderr END ====
[2025-11-22 09:54:45]  *** Error codes and diagnostics ***
[2025-11-22 09:54:45]     "exeErrorCode": 65,
[2025-11-22 09:54:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2025-11-22 09:54:45]     "pilotErrorCode": 1305,
[2025-11-22 09:54:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2025-11-22 09:54:45]  *** Listing of results directory ***
[2025-11-22 09:54:45] total 405904
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc    576529 Nov 21 18:11 pilot3.tar.gz
[2025-11-22 09:54:45] -rwx------ 1 boinc boinc     36292 Nov 21 18:19 runpilot2-wrapper.sh
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc      5112 Nov 21 18:19 queuedata.json
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc       100 Nov 22 09:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 09:54:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 09:19 run_atlas
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc       105 Nov 22 09:19 job.xml
[2025-11-22 09:54:45] -rw-r--r-- 2 boinc boinc     15847 Nov 22 09:19 start_atlas.sh
[2025-11-22 09:54:45] drwxrwx--x 2 boinc boinc        68 Nov 22 09:19 shared
[2025-11-22 09:54:45] -rw-r--r-- 2 boinc boinc    590093 Nov 22 09:19 input.tar.gz
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc      8919 Nov 22 09:19 init_data.xml
[2025-11-22 09:54:45] -rw-r--r-- 2 boinc boinc 410880241 Nov 22 09:19 EVNT.47483658._000095.pool.root.1
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc         0 Nov 22 09:19 boinc_setup_complete
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc         0 Nov 22 09:19 boinc_lockfile
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc      2783 Nov 22 09:19 pandaJob.out
[2025-11-22 09:54:45] -rw------- 1 boinc boinc    989768 Nov 22 09:19 agis_schedconf.cvmfs.json
[2025-11-22 09:54:45] -rw------- 1 boinc boinc   1526164 Nov 22 09:19 agis_ddmendpoints.agis.ALL.json
[2025-11-22 09:54:45] drwx------ 5 boinc boinc      4096 Nov 22 09:19 pilot3
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc       525 Nov 22 09:50 boinc_task_state.xml
[2025-11-22 09:54:45] -rw------- 1 boinc boinc      1008 Nov 22 09:50 memory_monitor_summary.json
[2025-11-22 09:54:45] -rw------- 1 boinc boinc     81225 Nov 22 09:50 log.47556137._000948.job.log.tgz.1
[2025-11-22 09:54:45] -rw------- 1 boinc boinc        95 Nov 22 09:53 pilot_heartbeat.json
[2025-11-22 09:54:45] -rw------- 1 boinc boinc      9159 Nov 22 09:53 heartbeat.json
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc      8192 Nov 22 09:54 boinc_mmap_file
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc        24 Nov 22 09:54 wrapper_checkpoint.txt
[2025-11-22 09:54:45] -rw------- 1 boinc boinc      4821 Nov 22 09:54 pilotlog.txt
[2025-11-22 09:54:45] -rw------- 1 boinc boinc    347676 Nov 22 09:54 log.47556137._000948.job.log.1
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc       620 Nov 22 09:54 runtime_log
[2025-11-22 09:54:45] -rw------- 1 boinc boinc    450560 Nov 22 09:54 result.tar.gz
[2025-11-22 09:54:45] -rw------- 1 boinc boinc       186 Nov 22 09:54 output.list
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc      8661 Nov 22 09:54 runtime_log.err
[2025-11-22 09:54:45] -rw------- 1 boinc boinc       644 Nov 22 09:54 0JjLDmoukg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmplHKDmLamCDo.diag
[2025-11-22 09:54:45] -rw-r--r-- 1 boinc boinc     22364 Nov 22 09:54 stderr.txt
[2025-11-22 09:54:45] No HITS result produced
[2025-11-22 09:54:45]  *** Contents of shared directory: ***
[2025-11-22 09:54:45] total 402288
[2025-11-22 09:54:45] -rw-r--r-- 2 boinc boinc     15847 Nov 22 09:19 start_atlas.sh
[2025-11-22 09:54:45] -rw-r--r-- 2 boinc boinc    590093 Nov 22 09:19 input.tar.gz
[2025-11-22 09:54:45] -rw-r--r-- 2 boinc boinc 410880241 Nov 22 09:19 ATLAS.root_0
[2025-11-22 09:54:45] -rw------- 1 boinc boinc    450560 Nov 22 09:54 result.tar.gz
09:54:47 (18077): run_atlas exited; CPU time 50.599402
09:54:47 (18077): called boinc_finish(0)

</stderr_txt>
]]>

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