Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:15 (3921584): wrapper (7.7.26015): starting
00:02:15 (3921584): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:02:15] Arguments: --nthreads 9
[2025-11-22 00:02:15] Threads: 9
[2025-11-22 00:02:15] Checking for CVMFS
[2025-11-22 00:02:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:02:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:02:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:02:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:02:16] 2.13.3.0 12161 23844 335888 153159 0 740 38153011 40960001 23308 16776704 0 58107047 99.544 69078932 38331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:02:16] CVMFS is ok
[2025-11-22 00:02:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:02:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:02:16] Further information can be found at the LHC@home message board.
[2025-11-22 00:02:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:02:16] Checking for apptainer binary...
[2025-11-22 00:02:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:02:16] Running /usr/bin/apptainer --version
[2025-11-22 00:02:16] apptainer version 1.4.4-1.el9
[2025-11-22 00:02:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:02:16] c6-5-7-1.aglt2.org
[2025-11-22 00:02:16] apptainer works
[2025-11-22 00:02:16] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:02:16] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:02:16] Starting ATLAS job with PandaID=6894287680
[2025-11-22 00:02:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:22:06]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:22:06] 2025-11-23 14:06:13,781 | INFO     | time since job start (119019s) is within the limit (172800.0s)
[2025-11-23 09:22:06] 2025-11-23 14:06:14,007 | INFO     | monitor loop #6506: job 0:6894287680 is in state 'finished'
[2025-11-23 09:22:06] 2025-11-23 14:06:14,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:22:06] 2025-11-23 14:06:16,614 | INFO     | monitor loop #6507: job 0:6894287680 is in state 'finished'
[2025-11-23 09:22:06] 2025-11-23 14:06:16,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:22:06] 2025-11-23 14:06:17,352 | INFO     | PID=3928586 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 09:22:06] 2025-11-23 14:06:17,353 | INFO     | .. there are 25 such processes running
[2025-11-23 09:22:06] 2025-11-23 14:06:18,356 | INFO     | time since job start (119024s) is within the limit (172800.0s)
[2025-11-23 09:22:06] 2025-11-23 14:06:19,143 | INFO     | monitor loop #6508: job 0:6894287680 is in state 'finished'
[2025-11-23 09:22:06] 2025-11-23 14:06:19,143 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:22:06] 2025-11-23 14:06:20,366 | INFO     | time since job start (119026s) is within the limit (172800.0s)
[2025-11-23 09:22:06] 2025-11-23 14:06:21,683 | INFO     | monitor loop #6509: job 0:6894287680 is in state 'finished'
[2025-11-23 09:22:06] 2025-11-23 14:06:21,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:22:06] 2025-11-23 14:06:22,373 | INFO     | time since job start (119028s) is within the limit (172800.0s)
[2025-11-23 09:22:06] 2025-11-23 14:06:23,063 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 09:22:06] 2025-11-23 14:06:23,157 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2876.7240892857144
[2025-11-23 09:22:06] 2025-11-23 14:06:23,226 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6894287680/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:22:06] 2025-11-23 14:06:23,261 | INFO     | extracted standard info from prmon json
[2025-11-23 09:22:06] 2025-11-23 14:06:23,261 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:22:06] 2025-11-23 14:06:23,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:22:06] 2025-11-23 14:06:23,384 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:22:06] 2025-11-23 14:06:23,391 | INFO     | sum of square deviations: 2300309562048.5986
[2025-11-23 09:22:06] 2025-11-23 14:06:23,539 | INFO     | sum of deviations: 2326428262134.603
[2025-11-23 09:22:06] 2025-11-23 14:06:23,539 | INFO     | mean x: 1763847252.440513
[2025-11-23 09:22:06] 2025-11-23 14:06:23,539 | INFO     | mean y: 3057224.4707692307
[2025-11-23 09:22:06] 2025-11-23 14:06:23,539 | INFO     | intersect: -1780817505.2032812
[2025-11-23 09:22:06] 2025-11-23 14:06:23,541 | INFO     | chi2: 41.28770483437089
[2025-11-23 09:22:06] 2025-11-23 14:06:23,548 | INFO     | sum of square deviations: 2282667152666.7065
[2025-11-23 09:22:06] 2025-11-23 14:06:24,269 | INFO     | monitor loop #6510: job 0:6894287680 is in state 'finished'
[2025-11-23 09:22:06] 2025-11-23 14:06:24,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:22:06] 2025-11-23 14:06:24,462 | INFO     | time since job start (119030s) is within the limit (172800.0s)
[2025-11-23 09:22:06] 2025-11-23 14:06:24,469 | INFO     | sum of deviations: 3087744857583.836
[2025-11-23 09:22:06] 2025-11-23 14:06:24,469 | INFO     | mean x: 1763847099.9347043
[2025-11-23 09:22:06] 2025-11-23 14:06:24,469 | INFO     | mean y: 3063804.4550128533
[2025-11-23 09:22:06] 2025-11-23 14:06:24,469 | INFO     | intersect: -2382877486.2079473
[2025-11-23 09:22:06] 2025-11-23 14:06:24,471 | INFO     | chi2: 37.14165107352359
[2025-11-23 09:22:06] 2025-11-23 14:06:24,472 | INFO     | current chi2=37.14165107352359 (change=10.041860591378343 %)
[2025-11-23 09:22:06] 2025-11-23 14:06:24,472 | INFO     | right removable region: 1944
[2025-11-23 09:22:06] 2025-11-23 14:06:24,511 | INFO     | sum of square deviations: 2282658299619.536
[2025-11-23 09:22:06] 2025-11-23 14:06:25,207 | INFO     | sum of deviations: 1743431633396.8528
[2025-11-23 09:22:06] 2025-11-23 14:06:25,208 | INFO     | mean x: 1763847404.9845757
[2025-11-23 09:22:06] 2025-11-23 14:06:25,214 | INFO     | mean y: 3062259.828277635
[2025-11-23 09:22:06] 2025-11-23 14:06:25,214 | INFO     | intersect: -1344115880.170868
[2025-11-23 09:22:06] 2025-11-23 14:06:25,224 | INFO     | chi2: 39.09927565347054
[2025-11-23 09:22:06] 2025-11-23 14:06:25,224 | INFO     | current chi2=39.09927565347054 (change=5.300437962534895 %)
[2025-11-23 09:22:06] 2025-11-23 14:06:25,224 | INFO     | left removable region: 10
[2025-11-23 09:22:06] 2025-11-23 14:06:25,242 | INFO     | sum of square deviations: 2244156014687.1235
[2025-11-23 09:22:06] 2025-11-23 14:06:25,565 | INFO     | sum of deviations: 2438409327686.066
[2025-11-23 09:22:06] 2025-11-23 14:06:25,566 | INFO     | mean x: 1763847374.5139606
[2025-11-23 09:22:06] 2025-11-23 14:06:25,566 | INFO     | mean y: 3071688.34901758
[2025-11-23 09:22:06] 2025-11-23 14:06:25,566 | INFO     | intersect: -1913453661.2617822
[2025-11-23 09:22:06] 2025-11-23 14:06:25,580 | INFO     | chi2: 34.20199616560722
[2025-11-23 09:22:06] 2025-11-23 14:06:25,581 | INFO     | current memory leak: 1.09 B/s (using 1934 data points, chi2=34.20)
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | could have reported an average CPU frequency of 2851 MHz (68 samples)
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | ..............................
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . Timing measurements:
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . get job = 0 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . initial setup = 2 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . payload setup = 10 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . stage-in = 0 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . payload execution = 118926 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . stage-out = 16 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,599 | INFO     | . log creation = 4 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,600 | INFO     | ..............................
[2025-11-23 09:22:06] 2025-11-23 14:06:25,961 | INFO     | 
[2025-11-23 09:22:06] 2025-11-23 14:06:25,961 | INFO     | job summary report
[2025-11-23 09:22:06] 2025-11-23 14:06:25,961 | INFO     | --------------------------------------------------
[2025-11-23 09:22:06] 2025-11-23 14:06:25,961 | INFO     | PanDA job id: 6894287680
[2025-11-23 09:22:06] 2025-11-23 14:06:25,961 | INFO     | task id: 47533967
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | errors: (none)
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | pilot state: finished 
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | transexitcode: 0
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | exeerrorcode: 0
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | exeerrordiag: 
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | exitcode: 0
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | exitmsg: OK
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | cpuconsumptiontime: 246465 s
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | nevents: 1000
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | neventsw: 0
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | pid: 3951426
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | pgrp: 3951426
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | corecount: 9
[2025-11-23 09:22:06] 2025-11-23 14:06:25,962 | INFO     | event service: False
[2025-11-23 09:22:06] 2025-11-23 14:06:25,963 | INFO     | sizes: {0: 2298579, 1: 2298834, 8: 2299096, 12: 2299124, 118942: 2378118, 118943: 2378117, 118960: 2387323, 118963: 2387379, 119013: 2387625}
[2025-11-23 09:22:06] 2025-11-23 14:06:25,963 | INFO     | --------------------------------------------------
[2025-11-23 09:22:06] 2025-11-23 14:06:25,963 | INFO     | 
[2025-11-23 09:22:06] 2025-11-23 14:06:25,963 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 09:22:06] 2025-11-23 14:06:26,094 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | job 6894287680 has completed (purged errors)
[2025-11-23 09:22:06] 2025-11-23 14:06:26,096 | INFO     | overall cleanup function is called
[2025-11-23 09:22:06] 2025-11-23 14:06:27,181 | INFO     | --- collectZombieJob: --- 10, [3951426]
[2025-11-23 09:22:06] 2025-11-23 14:06:27,181 | INFO     | zombie collector waiting for pid 3951426
[2025-11-23 09:22:06] 2025-11-23 14:06:27,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:22:06] 2025-11-23 14:06:27,182 | INFO     | collected zombie processes
[2025-11-23 09:22:06] 2025-11-23 14:06:27,182 | INFO     | will attempt to kill all subprocesses of pid=3951426
[2025-11-23 09:22:06] 2025-11-23 14:06:28,551 | INFO     | process IDs to be killed: [3951426] (in reverse order)
[2025-11-23 09:22:06] 2025-11-23 14:06:28,668 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:22:06] 2025-11-23 14:06:28,669 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:22:06] 2025-11-23 14:06:28,730 | INFO     | did not find any defunct processes belonging to 3951426
[2025-11-23 09:22:06] 2025-11-23 14:06:28,793 | INFO     | did not find any defunct processes belonging to 3951426
[2025-11-23 09:22:06] 2025-11-23 14:06:28,819 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:22:06] 2025-11-23 14:06:28,819 | INFO     | ready for new job
[2025-11-23 09:22:06] 2025-11-23 14:06:28,819 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:22:06] 2025-11-23 14:06:28,836 | INFO     | ***************************************
[2025-11-23 09:22:06] 2025-11-23 14:06:28,856 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:22:06] 2025-11-23 14:06:28,856 | INFO     | ***************************************
[2025-11-23 09:22:06] 2025-11-23 14:06:28,856 | INFO     | 
[2025-11-23 09:22:06] 2025-11-23 14:06:28,874 | INFO     | architecture information:
[2025-11-23 09:22:06] 2025-11-23 14:06:28,879 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:22:06] 2025-11-23 14:06:28,923 | INFO     | cat /etc/os-release:
[2025-11-23 09:22:06] NAME="CentOS Linux"
[2025-11-23 09:22:06] VERSION="7 (Core)"
[2025-11-23 09:22:06] ID="centos"
[2025-11-23 09:22:06] ID_LIKE="rhel fedora"
[2025-11-23 09:22:06] VERSION_ID="7"
[2025-11-23 09:22:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:22:06] ANSI_COLOR="0;31"
[2025-11-23 09:22:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:22:06] HOME_URL="https://www.centos.org/"
[2025-11-23 09:22:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:22:06] 
[2025-11-23 09:22:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:22:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:22:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:22:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:22:06] 
[2025-11-23 09:22:06] 2025-11-23 14:06:28,924 | INFO     | ***************************************
[2025-11-23 09:22:06] 2025-11-23 14:06:29,430 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 09:22:06] 2025-11-23 14:06:29,683 | INFO     | sufficient remaining disk space (68858937344 B)
[2025-11-23 09:22:06] 2025-11-23 14:06:29,684 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:22:06] 2025-11-23 14:06:29,684 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:22:06] 2025-11-23 14:06:29,684 | INFO     | update_server=False
[2025-11-23 09:22:06] 2025-11-23 14:06:29,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:22:06] 2025-11-23 14:06:29,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:22:06] 2025-11-23 14:06:30,016 | INFO     | all data control threads have been joined
[2025-11-23 09:22:06] 2025-11-23 14:06:30,023 | INFO     | all payload control threads have been joined
[2025-11-23 09:22:06] 2025-11-23 14:06:30,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:22:06] 2025-11-23 14:06:30,384 | INFO     | aborting loop
[2025-11-23 09:22:06] 2025-11-23 14:06:30,690 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:30,806 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:22:06] 2025-11-23 14:06:31,021 | INFO     | [data] control thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,029 | INFO     | [payload] control thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,047 | INFO     | all job control threads have been joined
[2025-11-23 09:22:06] 2025-11-23 14:06:31,232 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,391 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,559 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,602 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,603 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,837 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:31,917 | INFO     | [job] validate thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:32,019 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:32,043 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:32,073 | INFO     | [job] control thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:32,225 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:06:32,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:22:06] 2025-11-23 14:06:36,317 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:22:06] 2025-11-23 14:07:02,652 | INFO     | PID=3928586 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 09:22:06] 2025-11-23 14:07:02,653 | INFO     | .. there are 25 such processes running
[2025-11-23 09:22:06] 2025-11-23 14:07:02,653 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:22:06] 2025-11-23 14:07:02,653 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:22:06] 2025-11-23 14:07:02,653 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:22:06] 2025-11-23 14:07:20,544 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:22:06] 2025-11-23 14:07:22,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031151351616)>', '<ExcThread(monitor, started 140030362253056)>']
[2025-11-23 09:22:06] 2025-11-23 14:07:22,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:22:06] 2025-11-23 14:07:22,781 | INFO     | [monitor] control thread has ended
[2025-11-23 09:22:06] 2025-11-23 14:07:27,615 | INFO     | all workflow threads have been joined
[2025-11-23 09:22:06] 2025-11-23 14:07:27,615 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:22:06] 2025-11-23 14:07:27,616 | INFO     | traces error code: 0
[2025-11-23 09:22:06] 2025-11-23 14:07:27,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:22:06] 2025-11-23 14:07:29,152 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:22:06] 2025-11-23 14:07:29,164 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:22:06] 2025-11-23 14:07:29,204 [wrapper] pilotpid: 3928586
[2025-11-23 09:22:06] 2025-11-23 14:07:29,211 [wrapper] Pilot exit status: 0
[2025-11-23 09:22:06] 2025-11-23 14:07:29,301 [wrapper] pandaids: 6894287680
[2025-11-23 09:22:06] 2025-11-23 14:07:29,581 [wrapper] cleanup supervisor_pilot 1284375 3928587
[2025-11-23 09:22:06] 2025-11-23 14:07:29,585 [wrapper] Test setup, not cleaning
[2025-11-23 09:22:06] 2025-11-23 14:07:29,587 [wrapper] apfmon messages muted
[2025-11-23 09:22:06] 2025-11-23 14:07:29,589 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:22:06] 2025-11-23 14:07:29,592 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:22:06]  *** Error codes and diagnostics ***
[2025-11-23 09:22:06]     "exeErrorCode": 0,
[2025-11-23 09:22:06]     "exeErrorDiag": "",
[2025-11-23 09:22:06]     "pilotErrorCode": 0,
[2025-11-23 09:22:06]     "pilotErrorDiag": "",
[2025-11-23 09:22:06]  *** Listing of results directory ***
[2025-11-23 09:22:06] total 1337260
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:50 pilot3.tar.gz
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 05:54 queuedata.json
[2025-11-23 09:22:06] -rwx------. 1 boincer umatlas     36292 Nov 21 05:54 runpilot2-wrapper.sh
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:22:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:02 run_atlas
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:02 job.xml
[2025-11-23 09:22:06] -rw-r--r--. 2 boincer umatlas 411106483 Nov 22 00:02 EVNT.47493127._002381.pool.root.1
[2025-11-23 09:22:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:02 start_atlas.sh
[2025-11-23 09:22:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:02 shared
[2025-11-23 09:22:06] -rw-r--r--. 2 boincer umatlas    590108 Nov 22 00:02 input.tar.gz
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:02 boinc_lockfile
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 00:02 pandaJob.out
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas        57 Nov 22 00:02 setup.sh.local
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas    989752 Nov 22 00:02 agis_schedconf.cvmfs.json
[2025-11-23 09:22:06] drwx------. 5 boincer umatlas      4096 Nov 22 00:02 pilot3
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas       533 Nov 23 07:37 boinc_task_state.xml
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas 920240257 Nov 23 09:02 HITS.47533967._003530.pool.root.1
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas      1084 Nov 23 09:05 memory_monitor_summary.json
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas   1526164 Nov 23 09:05 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas   2866133 Nov 23 09:05 log.47533967._003530.job.log.tgz.1
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas        95 Nov 23 09:06 pilot_heartbeat.json
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas      8670 Nov 23 09:06 heartbeat.json
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas      4824 Nov 23 09:07 pilotlog.txt
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas  14172599 Nov 23 09:07 log.47533967._003530.job.log.1
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas       353 Nov 23 09:07 output.list
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas       620 Nov 23 09:07 runtime_log
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas  17059840 Nov 23 09:07 result.tar.gz
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas      9344 Nov 23 09:07 runtime_log.err
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas       669 Nov 23 09:07 JF2NDmsxdg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxIJKDmPe55Cn.diag
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas      6841 Nov 23 09:20 init_data.xml
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas        29 Nov 23 09:22 wrapper_checkpoint.txt
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 09:22 boinc_mmap_file
[2025-11-23 09:22:06] -rw-r--r--. 1 boincer umatlas     21880 Nov 23 09:22 stderr.txt
[2025-11-23 09:22:06] HITS file was successfully produced:
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas 920240257 Nov 23 09:02 shared/HITS.pool.root.1
[2025-11-23 09:22:06]  *** Contents of shared directory: ***
[2025-11-23 09:22:06] total 1317412
[2025-11-23 09:22:06] -rw-r--r--. 2 boincer umatlas 411106483 Nov 22 00:02 ATLAS.root_0
[2025-11-23 09:22:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:02 start_atlas.sh
[2025-11-23 09:22:06] -rw-r--r--. 2 boincer umatlas    590108 Nov 22 00:02 input.tar.gz
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas 920240257 Nov 23 09:02 HITS.pool.root.1
[2025-11-23 09:22:06] -rw-------. 1 boincer umatlas  17059840 Nov 23 09:07 result.tar.gz
09:22:08 (3921584): run_atlas exited; CPU time 248841.702891
09:22:08 (3921584): called boinc_finish(0)

</stderr_txt>
]]>

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