Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:19:15 (3221): wrapper (7.7.26015): starting
22:19:15 (3221): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:19:15] Arguments: --nthreads 8
[2025-11-24 22:19:15] Threads: 8
[2025-11-24 22:19:15] Checking for CVMFS
[2025-11-24 22:19:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:19:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:19:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:19:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:19:18] 2.11.2.0 32703 282847 140068 153259 3 75 16911581 25165824 4632 130560 11 138201893 99.875 77593880 2918 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 22:19:18] CVMFS is ok
[2025-11-24 22:19:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:19:18] Checking for apptainer binary...
[2025-11-24 22:19:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:19:18] Running /usr/bin/apptainer --version
[2025-11-24 22:19:18] apptainer version 1.3.2-1.el7
[2025-11-24 22:19:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:19:37] cg-vwn328.simple-grid.lan
[2025-11-24 22:19:37] apptainer works
[2025-11-24 22:19:37] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:19:37] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:19:37] Starting ATLAS job with PandaID=6894287287
[2025-11-24 22:19:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:37:40]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:37:40] 2025-11-25 22:37:00,431 | INFO     | this job has now completed (state=finished)
[2025-11-25 23:37:40] 2025-11-25 22:37:00,431 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 23:37:40] 2025-11-25 22:37:00,431 | INFO     | log transfer has been attempted: DONE
[2025-11-25 23:37:40] 2025-11-25 22:37:00,431 | INFO     | job 6894287287 has finished - writing final server update
[2025-11-25 23:37:40] 2025-11-25 22:37:00,432 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 23:37:40] 2025-11-25 22:37:00,432 | INFO     | executing command: lscpu
[2025-11-25 23:37:40] 2025-11-25 22:37:00,465 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 23:37:40] 2025-11-25 22:37:01,949 | INFO     | monitor loop #6080: job 0:6894287287 is in state 'finished'
[2025-11-25 23:37:40] 2025-11-25 22:37:01,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:37:40] 2025-11-25 22:37:02,064 | INFO     | time since job start (90806s) is within the limit (172800.0s)
[2025-11-25 23:37:40] 2025-11-25 22:37:04,071 | INFO     | time since job start (90808s) is within the limit (172800.0s)
[2025-11-25 23:37:40] 2025-11-25 22:37:04,454 | INFO     | monitor loop #6081: job 0:6894287287 is in state 'finished'
[2025-11-25 23:37:40] 2025-11-25 22:37:04,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:37:40] 2025-11-25 22:37:06,078 | INFO     | time since job start (90810s) is within the limit (172800.0s)
[2025-11-25 23:37:40] 2025-11-25 22:37:06,957 | INFO     | monitor loop #6082: job 0:6894287287 is in state 'finished'
[2025-11-25 23:37:40] 2025-11-25 22:37:06,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,272 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:37:40] 2025-11-25 22:37:07,273 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 23:37:40] 2025-11-25 22:37:07,276 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6894287287/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,277 | INFO     | extracted standard info from prmon json
[2025-11-25 23:37:40] 2025-11-25 22:37:07,277 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:37:40] 2025-11-25 22:37:07,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:37:40] 2025-11-25 22:37:07,309 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:37:40] 2025-11-25 22:37:07,312 | INFO     | sum of square deviations: 1005228591060.7566
[2025-11-25 23:37:40] 2025-11-25 22:37:07,385 | INFO     | sum of deviations: 4526215384681.005
[2025-11-25 23:37:40] 2025-11-25 22:37:07,385 | INFO     | mean x: 1764065045.737162
[2025-11-25 23:37:40] 2025-11-25 22:37:07,386 | INFO     | mean y: 2834270.210810811
[2025-11-25 23:37:40] 2025-11-25 22:37:07,386 | INFO     | intersect: -7940173340.792321
[2025-11-25 23:37:40] 2025-11-25 22:37:07,388 | INFO     | chi2: 26.70746798251064
[2025-11-25 23:37:40] 2025-11-25 22:37:07,390 | INFO     | sum of square deviations: 995075433548.0747
[2025-11-25 23:37:40] 2025-11-25 22:37:07,464 | INFO     | sum of deviations: 5006385933164.229
[2025-11-25 23:37:40] 2025-11-25 22:37:07,465 | INFO     | mean x: 1764064893.241356
[2025-11-25 23:37:40] 2025-11-25 22:37:07,465 | INFO     | mean y: 2841483.4094915255
[2025-11-25 23:37:40] 2025-11-25 22:37:07,465 | INFO     | intersect: -8872455171.460348
[2025-11-25 23:37:40] 2025-11-25 22:37:07,467 | INFO     | chi2: 23.649779066749932
[2025-11-25 23:37:40] 2025-11-25 22:37:07,467 | INFO     | current chi2=23.649779066749932 (change=11.448816180414525 %)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,467 | INFO     | right removable region: 1474
[2025-11-25 23:37:40] 2025-11-25 22:37:07,470 | INFO     | sum of square deviations: 995074316638.0732
[2025-11-25 23:37:40] 2025-11-25 22:37:07,555 | INFO     | sum of deviations: 3895353601627.7153
[2025-11-25 23:37:40] 2025-11-25 22:37:07,556 | INFO     | mean x: 1764065198.241356
[2025-11-25 23:37:40] 2025-11-25 22:37:07,556 | INFO     | mean y: 2843744.6833898304
[2025-11-25 23:37:40] 2025-11-25 22:37:07,556 | INFO     | intersect: -6902829136.807454
[2025-11-25 23:37:40] 2025-11-25 22:37:07,558 | INFO     | chi2: 21.700006141481172
[2025-11-25 23:37:40] 2025-11-25 22:37:07,559 | INFO     | current chi2=21.700006141481172 (change=18.74929455801875 %)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,559 | INFO     | left removable region: 10
[2025-11-25 23:37:40] 2025-11-25 22:37:07,561 | INFO     | sum of square deviations: 972977418651.9985
[2025-11-25 23:37:40] 2025-11-25 22:37:07,642 | INFO     | sum of deviations: 3903042423844.227
[2025-11-25 23:37:40] 2025-11-25 22:37:07,643 | INFO     | mean x: 1764065167.750683
[2025-11-25 23:37:40] 2025-11-25 22:37:07,643 | INFO     | mean y: 2860964.7786885244
[2025-11-25 23:37:40] 2025-11-25 22:37:07,643 | INFO     | intersect: -7073584034.012607
[2025-11-25 23:37:40] 2025-11-25 22:37:07,645 | INFO     | chi2: 14.172773392504357
[2025-11-25 23:37:40] 2025-11-25 22:37:07,646 | INFO     | current memory leak: 4.01 B/s (using 1464 data points, chi2=14.17)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,648 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,649 | INFO     | ..............................
[2025-11-25 23:37:40] 2025-11-25 22:37:07,649 | INFO     | . Timing measurements:
[2025-11-25 23:37:40] 2025-11-25 22:37:07,649 | INFO     | . get job = 0 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,649 | INFO     | . initial setup = 9 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,650 | INFO     | . payload setup = 172 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,650 | INFO     | . stage-in = 0 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,650 | INFO     | . payload execution = 90422 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,650 | INFO     | . stage-out = 3 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,650 | INFO     | . log creation = 1 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,650 | INFO     | ..............................
[2025-11-25 23:37:40] 2025-11-25 22:37:07,884 | INFO     | 
[2025-11-25 23:37:40] 2025-11-25 22:37:07,884 | INFO     | job summary report
[2025-11-25 23:37:40] 2025-11-25 22:37:07,885 | INFO     | --------------------------------------------------
[2025-11-25 23:37:40] 2025-11-25 22:37:07,885 | INFO     | PanDA job id: 6894287287
[2025-11-25 23:37:40] 2025-11-25 22:37:07,885 | INFO     | task id: 47533967
[2025-11-25 23:37:40] 2025-11-25 22:37:07,885 | INFO     | errors: (none)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,885 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:37:40] 2025-11-25 22:37:07,885 | INFO     | pilot state: finished 
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | transexitcode: 0
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | exeerrorcode: 0
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | exeerrordiag: 
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | exitcode: 0
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | exitmsg: OK
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | cpuconsumptiontime: 337094 s
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | nevents: 1000
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | neventsw: 0
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | pid: 13744
[2025-11-25 23:37:40] 2025-11-25 22:37:07,886 | INFO     | pgrp: 13744
[2025-11-25 23:37:40] 2025-11-25 22:37:07,887 | INFO     | corecount: 8
[2025-11-25 23:37:40] 2025-11-25 22:37:07,887 | INFO     | event service: False
[2025-11-25 23:37:40] 2025-11-25 22:37:07,887 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284337, 23: 2284365, 33: 2284393, 44: 2284449, 55: 2284605, 65: 2284633, 76: 2284661, 87: 2284717, 98: 2284745, 99: 2285315, 1
[2025-11-25 23:37:40] 2025-11-25 22:37:07,887 | INFO     | --------------------------------------------------
[2025-11-25 23:37:40] 2025-11-25 22:37:07,887 | INFO     | 
[2025-11-25 23:37:40] 2025-11-25 22:37:07,887 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 23:37:40] 2025-11-25 22:37:07,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,926 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,928 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,928 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,928 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:37:40] 2025-11-25 22:37:07,928 | INFO     | job 6894287287 has completed (purged errors)
[2025-11-25 23:37:40] 2025-11-25 22:37:07,928 | INFO     | overall cleanup function is called
[2025-11-25 23:37:40] 2025-11-25 22:37:08,949 | INFO     | --- collectZombieJob: --- 10, [13744]
[2025-11-25 23:37:40] 2025-11-25 22:37:08,949 | INFO     | zombie collector waiting for pid 13744
[2025-11-25 23:37:40] 2025-11-25 22:37:08,950 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:37:40] 2025-11-25 22:37:08,950 | INFO     | collected zombie processes
[2025-11-25 23:37:40] 2025-11-25 22:37:08,950 | INFO     | will attempt to kill all subprocesses of pid=13744
[2025-11-25 23:37:40] 2025-11-25 22:37:09,071 | INFO     | process IDs to be killed: [13744] (in reverse order)
[2025-11-25 23:37:40] 2025-11-25 22:37:09,149 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:37:40] 2025-11-25 22:37:09,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:37:40] 2025-11-25 22:37:09,153 | INFO     | did not find any defunct processes belonging to 13744
[2025-11-25 23:37:40] 2025-11-25 22:37:09,156 | INFO     | did not find any defunct processes belonging to 13744
[2025-11-25 23:37:40] 2025-11-25 22:37:09,158 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:37:40] 2025-11-25 22:37:09,158 | INFO     | ready for new job
[2025-11-25 23:37:40] 2025-11-25 22:37:09,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:37:40] 2025-11-25 22:37:09,165 | INFO     | ***************************************
[2025-11-25 23:37:40] 2025-11-25 22:37:09,165 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:37:40] 2025-11-25 22:37:09,166 | INFO     | ***************************************
[2025-11-25 23:37:40] 2025-11-25 22:37:09,166 | INFO     | 
[2025-11-25 23:37:40] 2025-11-25 22:37:09,166 | INFO     | pilot is running in a VM
[2025-11-25 23:37:40] 2025-11-25 22:37:09,166 | INFO     | architecture information:
[2025-11-25 23:37:40] 2025-11-25 22:37:09,167 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:37:40] 2025-11-25 22:37:09,187 | INFO     | cat /etc/os-release:
[2025-11-25 23:37:40] NAME="CentOS Linux"
[2025-11-25 23:37:40] VERSION="7 (Core)"
[2025-11-25 23:37:40] ID="centos"
[2025-11-25 23:37:40] ID_LIKE="rhel fedora"
[2025-11-25 23:37:40] VERSION_ID="7"
[2025-11-25 23:37:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:37:40] ANSI_COLOR="0;31"
[2025-11-25 23:37:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:37:40] HOME_URL="https://www.centos.org/"
[2025-11-25 23:37:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:37:40] 
[2025-11-25 23:37:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:37:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:37:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:37:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:37:40] 
[2025-11-25 23:37:40] 2025-11-25 22:37:09,188 | INFO     | ***************************************
[2025-11-25 23:37:40] 2025-11-25 22:37:09,689 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 23:37:40] 2025-11-25 22:37:09,724 | INFO     | sufficient remaining disk space (495100887040 B)
[2025-11-25 23:37:40] 2025-11-25 22:37:09,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:37:40] 2025-11-25 22:37:09,725 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:37:40] 2025-11-25 22:37:09,725 | INFO     | update_server=False
[2025-11-25 23:37:40] 2025-11-25 22:37:09,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:37:40] 2025-11-25 22:37:09,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:37:40] 2025-11-25 22:37:10,017 | INFO     | all data control threads have been joined
[2025-11-25 23:37:40] 2025-11-25 22:37:10,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:37:40] 2025-11-25 22:37:10,431 | INFO     | all payload control threads have been joined
[2025-11-25 23:37:40] 2025-11-25 22:37:10,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:37:40] 2025-11-25 22:37:10,467 | INFO     | aborting loop
[2025-11-25 23:37:40] 2025-11-25 22:37:10,732 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:10,733 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:10,737 | INFO     | [job] validate thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:10,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:37:40] 2025-11-25 22:37:11,022 | INFO     | [data] control thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,028 | INFO     | all job control threads have been joined
[2025-11-25 23:37:40] 2025-11-25 22:37:11,177 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,437 | INFO     | [payload] control thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,472 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,514 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,622 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,682 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,761 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:11,826 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:12,034 | INFO     | [job] control thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:12,047 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:12,158 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:14,113 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:37:40] 2025-11-25 22:37:14,932 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:37:40] 2025-11-25 22:37:16,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993179645760)>', '<ExcThread(monitor, started 139992865150720)>']
[2025-11-25 23:37:40] 2025-11-25 22:37:21,578 | INFO     | all workflow threads have been joined
[2025-11-25 23:37:40] 2025-11-25 22:37:21,578 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:37:40] 2025-11-25 22:37:21,579 | INFO     | traces error code: 0
[2025-11-25 23:37:40] 2025-11-25 22:37:21,579 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:37:40] 2025-11-25 22:37:39,268 | INFO     | PID=7021 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 23:37:40] 2025-11-25 22:37:39,269 | INFO     | .. there are 8 such processes running
[2025-11-25 23:37:40] 2025-11-25 22:37:39,271 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:37:40] 2025-11-25 22:37:39,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:37:40] 2025-11-25 22:37:39,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:37:40] 2025-11-25 22:37:39,271 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:37:40] 2025-11-25 22:37:39,271 | INFO     | [monitor] control thread has ended
[2025-11-25 23:37:40] 2025-11-25 22:37:39,479 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:37:40] 2025-11-25 22:37:39,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:37:40] 2025-11-25 22:37:39,514 [wrapper] pilotpid: 7021
[2025-11-25 23:37:40] 2025-11-25 22:37:39,517 [wrapper] Pilot exit status: 0
[2025-11-25 23:37:40] 2025-11-25 22:37:39,677 [wrapper] pandaids: 6894287287
[2025-11-25 23:37:40] 2025-11-25 22:37:39,718 [wrapper] cleanup supervisor_pilot 27344 7022
[2025-11-25 23:37:40] 2025-11-25 22:37:39,790 [wrapper] Test setup, not cleaning
[2025-11-25 23:37:40] 2025-11-25 22:37:39,825 [wrapper] apfmon messages muted
[2025-11-25 23:37:40] 2025-11-25 22:37:39,883 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:37:40] 2025-11-25 22:37:39,887 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:37:40]  *** Error codes and diagnostics ***
[2025-11-25 23:37:40]     "exeErrorCode": 0,
[2025-11-25 23:37:40]     "exeErrorDiag": "",
[2025-11-25 23:37:40]     "pilotErrorCode": 0,
[2025-11-25 23:37:40]     "pilotErrorDiag": "",
[2025-11-25 23:37:40]  *** Listing of results directory ***
[2025-11-25 23:37:40] total 1334048
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc    576529 Nov 21 11:34 pilot3.tar.gz
[2025-11-25 23:37:40] -rwx------. 1 boinc boinc     36292 Nov 21 11:47 runpilot2-wrapper.sh
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc      5112 Nov 21 11:47 queuedata.json
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:37:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:19 run_atlas
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:19 job.xml
[2025-11-25 23:37:40] -rw-r--r--. 2 boinc boinc 409944595 Nov 24 22:19 EVNT.47493127._002376.pool.root.1
[2025-11-25 23:37:40] drwxrwx--x. 2 boinc boinc        68 Nov 24 22:19 shared
[2025-11-25 23:37:40] -rw-r--r--. 2 boinc boinc    590101 Nov 24 22:19 input.tar.gz
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc      6392 Nov 24 22:19 init_data.xml
[2025-11-25 23:37:40] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:19 start_atlas.sh
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:19 boinc_lockfile
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc      2785 Nov 24 22:19 pandaJob.out
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc    991801 Nov 24 22:23 agis_schedconf.cvmfs.json
[2025-11-25 23:37:40] drwx------. 5 boinc boinc      4096 Nov 24 22:23 pilot3
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc       533 Nov 25 23:13 boinc_task_state.xml
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc 922911776 Nov 25 23:36 HITS.47533967._003477.pool.root.1
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc      1031 Nov 25 23:36 memory_monitor_summary.json
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc   1516240 Nov 25 23:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc   2546227 Nov 25 23:36 log.47533967._003477.job.log.tgz.1
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc      7960 Nov 25 23:37 heartbeat.json
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc      8192 Nov 25 23:37 boinc_mmap_file
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc        29 Nov 25 23:37 wrapper_checkpoint.txt
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc        95 Nov 25 23:37 pilot_heartbeat.json
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc       819 Nov 25 23:37 pilotlog.txt
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc  12105467 Nov 25 23:37 log.47533967._003477.job.log.1
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc       353 Nov 25 23:37 output.list
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc       620 Nov 25 23:37 runtime_log
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc  14673920 Nov 25 23:37 result.tar.gz
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc      8817 Nov 25 23:37 runtime_log.err
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc       662 Nov 25 23:37 NouLDm3qdg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXIJKDmt3khGn.diag
[2025-11-25 23:37:40] -rw-r--r--. 1 boinc boinc     21423 Nov 25 23:37 stderr.txt
[2025-11-25 23:37:40] HITS file was successfully produced:
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc 922911776 Nov 25 23:36 shared/HITS.pool.root.1
[2025-11-25 23:37:40]  *** Contents of shared directory: ***
[2025-11-25 23:37:40] total 1316552
[2025-11-25 23:37:40] -rw-r--r--. 2 boinc boinc 409944595 Nov 24 22:19 ATLAS.root_0
[2025-11-25 23:37:40] -rw-r--r--. 2 boinc boinc    590101 Nov 24 22:19 input.tar.gz
[2025-11-25 23:37:40] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:19 start_atlas.sh
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc 922911776 Nov 25 23:36 HITS.pool.root.1
[2025-11-25 23:37:40] -rw-------. 1 boinc boinc  14673920 Nov 25 23:37 result.tar.gz
23:37:41 (3221): run_atlas exited; CPU time 337676.269682
23:37:41 (3221): called boinc_finish(0)

</stderr_txt>
]]>

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