Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:40:14 (23917): wrapper (7.7.26015): starting
00:40:14 (23917): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:40:14] Arguments: --nthreads 8
[2025-11-25 00:40:14] Threads: 8
[2025-11-25 00:40:14] Checking for CVMFS
[2025-11-25 00:40:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:40:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:40:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:40:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:40:17] 2.11.2.0 5744 283112 141996 153263 1 84 20159682 25165824 4632 130560 12 161492563 99.890 80857978 3245 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 00:40:17] CVMFS is ok
[2025-11-25 00:40:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:40:17] Checking for apptainer binary...
[2025-11-25 00:40:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:40:17] Running /usr/bin/apptainer --version
[2025-11-25 00:40:17] apptainer version 1.3.2-1.el7
[2025-11-25 00:40:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:40:32] cg-vwn299.simple-grid.lan
[2025-11-25 00:40:32] apptainer works
[2025-11-25 00:40:32] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:40:32] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:40:32] Starting ATLAS job with PandaID=6891561011
[2025-11-25 00:40:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:06:13]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:06:13] 2025-11-26 01:05:12,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:06:13] 2025-11-26 01:05:13,037 | INFO     | time since job start (91251s) is within the limit (172800.0s)
[2025-11-26 02:06:13] 2025-11-26 01:05:15,044 | INFO     | time since job start (91253s) is within the limit (172800.0s)
[2025-11-26 02:06:13] 2025-11-26 01:05:15,366 | INFO     | monitor loop #6123: job 0:6891561011 is in state 'finished'
[2025-11-26 02:06:13] 2025-11-26 01:05:15,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:06:13] 2025-11-26 01:05:17,051 | INFO     | time since job start (91255s) is within the limit (172800.0s)
[2025-11-26 02:06:13] 2025-11-26 01:05:17,874 | INFO     | monitor loop #6124: job 0:6891561011 is in state 'finished'
[2025-11-26 02:06:13] 2025-11-26 01:05:17,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:06:13] 2025-11-26 01:05:19,058 | INFO     | time since job start (91257s) is within the limit (172800.0s)
[2025-11-26 02:06:13] 2025-11-26 01:05:20,381 | INFO     | monitor loop #6125: job 0:6891561011 is in state 'finished'
[2025-11-26 02:06:13] 2025-11-26 01:05:20,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:06:13] 2025-11-26 01:05:21,067 | INFO     | time since job start (91259s) is within the limit (172800.0s)
[2025-11-26 02:06:13] 2025-11-26 01:05:22,884 | INFO     | monitor loop #6126: job 0:6891561011 is in state 'finished'
[2025-11-26 02:06:13] 2025-11-26 01:05:22,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:06:13] 2025-11-26 01:05:23,074 | INFO     | time since job start (91261s) is within the limit (172800.0s)
[2025-11-26 02:06:13] 2025-11-26 01:05:24,765 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:06:13] 2025-11-26 01:05:24,766 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-26 02:06:13] 2025-11-26 01:05:24,768 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6891561011/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:06:13] 2025-11-26 01:05:24,769 | INFO     | extracted standard info from prmon json
[2025-11-26 02:06:13] 2025-11-26 01:05:24,769 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:06:13] 2025-11-26 01:05:24,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:06:13] 2025-11-26 01:05:24,797 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:06:13] 2025-11-26 01:05:24,799 | INFO     | sum of square deviations: 1017503112962.3984
[2025-11-26 02:06:13] 2025-11-26 01:05:24,860 | INFO     | sum of deviations: 3656015496951.12
[2025-11-26 02:06:13] 2025-11-26 01:05:24,861 | INFO     | mean x: 1764073673.794751
[2025-11-26 02:06:13] 2025-11-26 01:05:24,861 | INFO     | mean y: 2841553.990578735
[2025-11-26 02:06:13] 2025-11-26 01:05:24,861 | INFO     | intersect: -6335695013.607563
[2025-11-26 02:06:13] 2025-11-26 01:05:24,863 | INFO     | chi2: 23.616245965099353
[2025-11-26 02:06:13] 2025-11-26 01:05:24,865 | INFO     | sum of square deviations: 1007267349706.489
[2025-11-26 02:06:13] 2025-11-26 01:05:24,938 | INFO     | sum of deviations: 4151274058727.5835
[2025-11-26 02:06:13] 2025-11-26 01:05:24,938 | INFO     | mean x: 1764073521.2991223
[2025-11-26 02:06:13] 2025-11-26 01:05:24,939 | INFO     | mean y: 2848931.9783929777
[2025-11-26 02:06:13] 2025-11-26 01:05:24,939 | INFO     | intersect: -7267467780.651263
[2025-11-26 02:06:13] 2025-11-26 01:05:24,941 | INFO     | chi2: 20.363603357774686
[2025-11-26 02:06:13] 2025-11-26 01:05:24,941 | INFO     | current chi2=20.363603357774686 (change=13.772902823469485 %)
[2025-11-26 02:06:13] 2025-11-26 01:05:24,941 | INFO     | right removable region: 1480
[2025-11-26 02:06:13] 2025-11-26 01:05:24,943 | INFO     | sum of square deviations: 1007266176066.4883
[2025-11-26 02:06:13] 2025-11-26 01:05:25,003 | INFO     | sum of deviations: 3044033113928.6074
[2025-11-26 02:06:13] 2025-11-26 01:05:25,003 | INFO     | mean x: 1764073826.2991223
[2025-11-26 02:06:13] 2025-11-26 01:05:25,003 | INFO     | mean y: 2850670.2356515867
[2025-11-26 02:06:13] 2025-11-26 01:05:25,004 | INFO     | intersect: -5328311310.840153
[2025-11-26 02:06:13] 2025-11-26 01:05:25,005 | INFO     | chi2: 19.080821626217688
[2025-11-26 02:06:13] 2025-11-26 01:05:25,006 | INFO     | current chi2=19.080821626217688 (change=19.204679463383904 %)
[2025-11-26 02:06:13] 2025-11-26 01:05:25,006 | INFO     | left removable region: 10
[2025-11-26 02:06:13] 2025-11-26 01:05:25,008 | INFO     | sum of square deviations: 984988471059.283
[2025-11-26 02:06:13] 2025-11-26 01:05:25,066 | INFO     | sum of deviations: 3140776873681.015
[2025-11-26 02:06:13] 2025-11-26 01:05:25,067 | INFO     | mean x: 1764073795.8088436
[2025-11-26 02:06:13] 2025-11-26 01:05:25,067 | INFO     | mean y: 2867412.3061224488
[2025-11-26 02:06:13] 2025-11-26 01:05:25,067 | INFO     | intersect: -5622134650.291252
[2025-11-26 02:06:13] 2025-11-26 01:05:25,069 | INFO     | chi2: 11.998292661898072
[2025-11-26 02:06:13] 2025-11-26 01:05:25,069 | INFO     | current memory leak: 3.19 B/s (using 1470 data points, chi2=12.00)
[2025-11-26 02:06:13] 2025-11-26 01:05:25,071 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 02:06:13] 2025-11-26 01:05:25,071 | INFO     | ..............................
[2025-11-26 02:06:13] 2025-11-26 01:05:25,071 | INFO     | . Timing measurements:
[2025-11-26 02:06:13] 2025-11-26 01:05:25,071 | INFO     | . get job = 0 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,072 | INFO     | . initial setup = 8 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,072 | INFO     | . payload setup = 168 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,072 | INFO     | . stage-in = 0 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,072 | INFO     | . payload execution = 90796 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,072 | INFO     | . stage-out = 5 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,072 | INFO     | . log creation = 2 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,072 | INFO     | ..............................
[2025-11-26 02:06:13] 2025-11-26 01:05:25,081 | INFO     | time since job start (91263s) is within the limit (172800.0s)
[2025-11-26 02:06:13] 2025-11-26 01:05:25,190 | INFO     | 
[2025-11-26 02:06:13] 2025-11-26 01:05:25,190 | INFO     | job summary report
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | --------------------------------------------------
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | PanDA job id: 6891561011
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | task id: 47493068
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | errors: (none)
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | pilot state: finished 
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | transexitcode: 0
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | exeerrorcode: 0
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | exeerrordiag: 
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | exitcode: 0
[2025-11-26 02:06:13] 2025-11-26 01:05:25,191 | INFO     | exitmsg: OK
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | cpuconsumptiontime: 342003 s
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | nevents: 1000
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | neventsw: 0
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | pid: 2352
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | pgrp: 2352
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | corecount: 8
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | event service: False
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | sizes: {0: 2283467, 1: 2284152, 2: 2284351, 13: 2284351, 23: 2284407, 34: 2284435, 45: 2284591, 56: 2284619, 66: 2284647, 77: 2284675, 88: 2284731, 96: 2285301, 99
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | --------------------------------------------------
[2025-11-26 02:06:13] 2025-11-26 01:05:25,192 | INFO     | 
[2025-11-26 02:06:13] 2025-11-26 01:05:25,193 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-26 02:06:13] 2025-11-26 01:05:25,848 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,849 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:06:13] 2025-11-26 01:05:25,850 | INFO     | job 6891561011 has completed (purged errors)
[2025-11-26 02:06:13] 2025-11-26 01:05:25,851 | INFO     | overall cleanup function is called
[2025-11-26 02:06:13] 2025-11-26 01:05:26,868 | INFO     | --- collectZombieJob: --- 10, [2352]
[2025-11-26 02:06:13] 2025-11-26 01:05:26,869 | INFO     | zombie collector waiting for pid 2352
[2025-11-26 02:06:13] 2025-11-26 01:05:26,869 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:06:13] 2025-11-26 01:05:26,869 | INFO     | collected zombie processes
[2025-11-26 02:06:13] 2025-11-26 01:05:26,869 | INFO     | will attempt to kill all subprocesses of pid=2352
[2025-11-26 02:06:13] 2025-11-26 01:05:26,984 | INFO     | process IDs to be killed: [2352] (in reverse order)
[2025-11-26 02:06:13] 2025-11-26 01:05:27,666 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:06:13] 2025-11-26 01:05:27,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:06:13] 2025-11-26 01:05:27,670 | INFO     | did not find any defunct processes belonging to 2352
[2025-11-26 02:06:13] 2025-11-26 01:05:27,672 | INFO     | did not find any defunct processes belonging to 2352
[2025-11-26 02:06:13] 2025-11-26 01:05:27,714 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:06:13] 2025-11-26 01:05:27,714 | INFO     | ready for new job
[2025-11-26 02:06:13] 2025-11-26 01:05:27,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:06:13] 2025-11-26 01:05:27,721 | INFO     | ***************************************
[2025-11-26 02:06:13] 2025-11-26 01:05:27,721 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:06:13] 2025-11-26 01:05:27,721 | INFO     | ***************************************
[2025-11-26 02:06:13] 2025-11-26 01:05:27,721 | INFO     | 
[2025-11-26 02:06:13] 2025-11-26 01:05:27,722 | INFO     | pilot is running in a VM
[2025-11-26 02:06:13] 2025-11-26 01:05:27,722 | INFO     | architecture information:
[2025-11-26 02:06:13] 2025-11-26 01:05:27,728 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:06:13] 2025-11-26 01:05:27,930 | INFO     | cat /etc/os-release:
[2025-11-26 02:06:13] NAME="CentOS Linux"
[2025-11-26 02:06:13] VERSION="7 (Core)"
[2025-11-26 02:06:13] ID="centos"
[2025-11-26 02:06:13] ID_LIKE="rhel fedora"
[2025-11-26 02:06:13] VERSION_ID="7"
[2025-11-26 02:06:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:06:13] ANSI_COLOR="0;31"
[2025-11-26 02:06:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:06:13] HOME_URL="https://www.centos.org/"
[2025-11-26 02:06:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:06:13] 
[2025-11-26 02:06:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:06:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:06:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:06:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:06:13] 
[2025-11-26 02:06:13] 2025-11-26 01:05:27,931 | INFO     | ***************************************
[2025-11-26 02:06:13] 2025-11-26 01:05:28,434 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-26 02:06:13] 2025-11-26 01:05:28,681 | INFO     | sufficient remaining disk space (494682505216 B)
[2025-11-26 02:06:13] 2025-11-26 01:05:28,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:06:13] 2025-11-26 01:05:28,682 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:06:13] 2025-11-26 01:05:28,682 | INFO     | update_server=False
[2025-11-26 02:06:13] 2025-11-26 01:05:28,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:06:13] 2025-11-26 01:05:28,704 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:06:13] 2025-11-26 01:05:28,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:06:13] 2025-11-26 01:05:28,899 | INFO     | aborting loop
[2025-11-26 02:06:13] 2025-11-26 01:05:29,279 | INFO     | all job control threads have been joined
[2025-11-26 02:06:13] 2025-11-26 01:05:29,632 | INFO     | all data control threads have been joined
[2025-11-26 02:06:13] 2025-11-26 01:05:29,689 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:29,707 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:29,798 | INFO     | all payload control threads have been joined
[2025-11-26 02:06:13] 2025-11-26 01:05:29,831 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:29,905 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:29,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:06:13] 2025-11-26 01:05:30,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,185 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:06:13] 2025-11-26 01:05:30,286 | INFO     | [job] control thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,348 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,639 | INFO     | [data] control thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,728 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,746 | INFO     | [job] validate thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,805 | INFO     | [payload] control thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:30,862 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:31,220 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:31,931 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:32,713 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:06:13] 2025-11-26 01:05:58,319 | INFO     | PID=27769 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 02:06:13] 2025-11-26 01:05:58,319 | INFO     | .. there are 9 such processes running
[2025-11-26 02:06:13] 2025-11-26 01:05:58,320 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:06:13] 2025-11-26 01:05:58,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:06:13] 2025-11-26 01:05:58,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:06:13] 2025-11-26 01:06:02,192 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:06:13] 2025-11-26 01:06:03,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620042655552)>', '<ExcThread(monitor, started 140619603224320)>']
[2025-11-26 02:06:13] 2025-11-26 01:06:04,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:06:13] 2025-11-26 01:06:04,357 | INFO     | [monitor] control thread has ended
[2025-11-26 02:06:13] 2025-11-26 01:06:08,633 | INFO     | all workflow threads have been joined
[2025-11-26 02:06:13] 2025-11-26 01:06:08,634 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:06:13] 2025-11-26 01:06:08,634 | INFO     | traces error code: 0
[2025-11-26 02:06:13] 2025-11-26 01:06:08,634 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:06:13] 2025-11-26 01:06:08,993 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:06:13] 2025-11-26 01:06:09,083 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:06:13] 2025-11-26 01:06:09,172 [wrapper] pilotpid: 27769
[2025-11-26 02:06:13] 2025-11-26 01:06:09,266 [wrapper] Pilot exit status: 0
[2025-11-26 02:06:13] 2025-11-26 01:06:09,692 [wrapper] pandaids: 6891561011
[2025-11-26 02:06:13] 2025-11-26 01:06:10,532 [wrapper] cleanup supervisor_pilot  9009 27770
[2025-11-26 02:06:13] 2025-11-26 01:06:10,629 [wrapper] Test setup, not cleaning
[2025-11-26 02:06:13] 2025-11-26 01:06:10,692 [wrapper] apfmon messages muted
[2025-11-26 02:06:13] 2025-11-26 01:06:10,792 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:06:13] 2025-11-26 01:06:10,907 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:06:13]  *** Error codes and diagnostics ***
[2025-11-26 02:06:13]     "exeErrorCode": 0,
[2025-11-26 02:06:13]     "exeErrorDiag": "",
[2025-11-26 02:06:13]     "pilotErrorCode": 0,
[2025-11-26 02:06:13]     "pilotErrorDiag": "",
[2025-11-26 02:06:13]  *** Listing of results directory ***
[2025-11-26 02:06:13] total 1332024
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-26 02:06:13] -rwx------. 1 boinc boinc     36292 Nov 18 16:26 runpilot2-wrapper.sh
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc       100 Nov 25 00:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:06:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 00:40 run_atlas
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc       105 Nov 25 00:40 job.xml
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc      6389 Nov 25 00:40 init_data.xml
[2025-11-26 02:06:13] -rw-r--r--. 2 boinc boinc 409960985 Nov 25 00:40 EVNT.47493065._000083.pool.root.1
[2025-11-26 02:06:13] -rw-r--r--. 2 boinc boinc     15120 Nov 25 00:40 start_atlas.sh
[2025-11-26 02:06:13] drwxrwx--x. 2 boinc boinc        68 Nov 25 00:40 shared
[2025-11-26 02:06:13] -rw-r--r--. 2 boinc boinc    590106 Nov 25 00:40 input.tar.gz
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc         0 Nov 25 00:40 boinc_lockfile
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc      2771 Nov 25 00:40 pandaJob.out
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc    991801 Nov 25 00:44 agis_schedconf.cvmfs.json
[2025-11-26 02:06:13] drwx------. 5 boinc boinc      4096 Nov 25 00:44 pilot3
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:39 boinc_task_state.xml
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc 920613843 Nov 26 02:02 HITS.47493068._000824.pool.root.1
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc      1031 Nov 26 02:03 memory_monitor_summary.json
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc   1516240 Nov 26 02:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc   2570907 Nov 26 02:03 log.47493068._000824.job.log.tgz.1
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc      7940 Nov 26 02:05 heartbeat.json
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc      8192 Nov 26 02:05 boinc_mmap_file
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc        29 Nov 26 02:05 wrapper_checkpoint.txt
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc        95 Nov 26 02:05 pilot_heartbeat.json
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc      4884 Nov 26 02:06 pilotlog.txt
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc  12184560 Nov 26 02:06 log.47493068._000824.job.log.1
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc       353 Nov 26 02:06 output.list
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc       620 Nov 26 02:06 runtime_log
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc  14776320 Nov 26 02:06 result.tar.gz
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc       662 Nov 26 02:06 ZqvMDmSmcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIOFKDm3nkrQo.diag
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc      8703 Nov 26 02:06 runtime_log.err
[2025-11-26 02:06:13] -rw-r--r--. 1 boinc boinc     21449 Nov 26 02:06 stderr.txt
[2025-11-26 02:06:13] HITS file was successfully produced:
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc 920613843 Nov 26 02:02 shared/HITS.pool.root.1
[2025-11-26 02:06:13]  *** Contents of shared directory: ***
[2025-11-26 02:06:13] total 1314424
[2025-11-26 02:06:13] -rw-r--r--. 2 boinc boinc 409960985 Nov 25 00:40 ATLAS.root_0
[2025-11-26 02:06:13] -rw-r--r--. 2 boinc boinc     15120 Nov 25 00:40 start_atlas.sh
[2025-11-26 02:06:13] -rw-r--r--. 2 boinc boinc    590106 Nov 25 00:40 input.tar.gz
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc 920613843 Nov 26 02:02 HITS.pool.root.1
[2025-11-26 02:06:13] -rw-------. 1 boinc boinc  14776320 Nov 26 02:06 result.tar.gz
02:06:15 (23917): run_atlas exited; CPU time 342519.625278
02:06:15 (23917): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN