Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:02:23 (41878): wrapper (7.7.26015): starting
09:02:23 (41878): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 09:02:23] Arguments: --nthreads 12
[2025-11-22 09:02:23] Threads: 12
[2025-11-22 09:02:23] Checking for CVMFS
[2025-11-22 09:02:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 09:02:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 09:02:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 09:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 09:02:30] 2.13.3.0 5957 935 100128 153165 0 82 4643760 102400001 1332 130560 29 3933765 99.995 39263 8 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 09:02:30] CVMFS is ok
[2025-11-22 09:02:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:02:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:02:30] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 09:02:30] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 09:02:30] Further information can be found at the LHC@home message board.
[2025-11-22 09:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:02:30] Checking for apptainer binary...
[2025-11-22 09:02:30] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 09:02:30] apptainer is not installed, using version from CVMFS
[2025-11-22 09:02:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:02:31] crocidura-russula
[2025-11-22 09:02:31] apptainer works
[2025-11-22 09:02:31] Set ATHENA_PROC_NUMBER=12
[2025-11-22 09:02:31] Set ATHENA_CORE_NUMBER=12
[2025-11-22 09:02:31] Starting ATLAS job with PandaID=6894285610
[2025-11-22 09:02:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:38:40]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:38:40] 2025-11-22 13:38:00,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:38:40] 2025-11-22 13:38:01,185 | INFO     | time since job start (16493s) is within the limit (172800.0s)
[2025-11-22 13:38:40] 2025-11-22 13:38:01,632 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:38:40] 2025-11-22 13:38:01,632 | INFO     | job 6894285610 has state=finished
[2025-11-22 13:38:40] 2025-11-22 13:38:01,632 | INFO     | preparing for final server update for job 6894285610 in state='finished'
[2025-11-22 13:38:40] 2025-11-22 13:38:01,633 | INFO     | this job has now completed (state=finished)
[2025-11-22 13:38:40] 2025-11-22 13:38:01,633 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 13:38:40] 2025-11-22 13:38:01,633 | INFO     | log transfer has been attempted: DONE
[2025-11-22 13:38:40] 2025-11-22 13:38:01,633 | INFO     | job 6894285610 has finished - writing final server update
[2025-11-22 13:38:40] 2025-11-22 13:38:01,633 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 13:38:40] 2025-11-22 13:38:01,633 | INFO     | executing command: lscpu
[2025-11-22 13:38:40] 2025-11-22 13:38:01,653 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 13:38:40] 2025-11-22 13:38:03,110 | INFO     | monitor loop #1200: job 0:6894285610 is in state 'finished'
[2025-11-22 13:38:40] 2025-11-22 13:38:03,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,190 | INFO     | time since job start (16495s) is within the limit (172800.0s)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,508 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 13:38:40] 2025-11-22 13:38:03,511 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3889.9495416666664
[2025-11-22 13:38:40] 2025-11-22 13:38:03,515 | INFO     | using path: /virtma/boinc/slots/1/PanDA_Pilot-6894285610/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,515 | INFO     | extracted standard info from prmon json
[2025-11-22 13:38:40] 2025-11-22 13:38:03,516 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:38:40] 2025-11-22 13:38:03,516 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:38:40] 2025-11-22 13:38:03,518 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:38:40] 2025-11-22 13:38:03,518 | INFO     | sum of square deviations: 6103286527.5
[2025-11-22 13:38:40] 2025-11-22 13:38:03,519 | INFO     | sum of deviations: 776067305270.4999
[2025-11-22 13:38:40] 2025-11-22 13:38:03,519 | INFO     | mean x: 1763810410.5
[2025-11-22 13:38:40] 2025-11-22 13:38:03,519 | INFO     | mean y: 2603852.5962962965
[2025-11-22 13:38:40] 2025-11-22 13:38:03,519 | INFO     | intersect: -224275837953.6555
[2025-11-22 13:38:40] 2025-11-22 13:38:03,519 | INFO     | chi2: 57.707226146083045
[2025-11-22 13:38:40] 2025-11-22 13:38:03,519 | INFO     | sum of square deviations: 5770452380.0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | sum of deviations: 852617947034.0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | mean x: 1763810258.0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | mean y: 2638936.5283018867
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | intersect: -260610599350.6006
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | chi2: 51.07543178308643
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | current chi2=51.07543178308643 (change=11.492138516948552 %)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | right removable region: 264
[2025-11-22 13:38:40] 2025-11-22 13:38:03,520 | INFO     | sum of square deviations: 5770452380.0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,521 | INFO     | sum of deviations: 692972285827.0002
[2025-11-22 13:38:40] 2025-11-22 13:38:03,521 | INFO     | mean x: 1763810563.0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,521 | INFO     | mean y: 2641888.4188679247
[2025-11-22 13:38:40] 2025-11-22 13:38:03,521 | INFO     | intersect: -211812958885.6609
[2025-11-22 13:38:40] 2025-11-22 13:38:03,521 | INFO     | chi2: 55.324063145946695
[2025-11-22 13:38:40] 2025-11-22 13:38:03,521 | INFO     | current chi2=55.324063145946695 (change=4.129747969697049 %)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,521 | INFO     | left removable region: 10
[2025-11-22 13:38:40] 2025-11-22 13:38:03,522 | INFO     | sum of square deviations: 5081276667.5
[2025-11-22 13:38:40] 2025-11-22 13:38:03,522 | INFO     | sum of deviations: 708460618744.0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | mean x: 1763810532.5
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | mean y: 2724133.7401574804
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | intersect: -245917815716.91428
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | chi2: 46.149342530023695
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | current memory leak: 139.43 B/s (using 254 data points, chi2=46.15)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | could have reported an average CPU frequency of 3914 MHz (12 samples)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | ..............................
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . Timing measurements:
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . get job = 0 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . initial setup = 33 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . payload setup = 2 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . stage-in = 0 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . payload execution = 16451 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . stage-out = 16 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | . log creation = 0 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,523 | INFO     | ..............................
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | 
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | job summary report
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | --------------------------------------------------
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | PanDA job id: 6894285610
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | task id: 47533967
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | errors: (none)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | pilot state: finished 
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | transexitcode: 0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | exeerrorcode: 0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | exeerrordiag: 
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | exitcode: 0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | exitmsg: OK
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | cpuconsumptiontime: 126836 s
[2025-11-22 13:38:40] 2025-11-22 13:38:03,766 | INFO     | nevents: 1000
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | neventsw: 0
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | pid: 4102
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | pgrp: 4102
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | corecount: 12
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | event service: False
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | sizes: {0: 2298755, 2: 2299017, 11: 2299045, 16458: 2331779, 16475: 2340771, 16478: 2340827, 16483: 2341201}
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | --------------------------------------------------
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | 
[2025-11-22 13:38:40] 2025-11-22 13:38:03,767 | INFO     | executing command: ls -lF /virtma/boinc/slots/1
[2025-11-22 13:38:40] 2025-11-22 13:38:03,779 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | job 6894285610 has completed (purged errors)
[2025-11-22 13:38:40] 2025-11-22 13:38:03,780 | INFO     | overall cleanup function is called
[2025-11-22 13:38:40] 2025-11-22 13:38:04,789 | INFO     | --- collectZombieJob: --- 10, [4102]
[2025-11-22 13:38:40] 2025-11-22 13:38:04,789 | INFO     | zombie collector waiting for pid 4102
[2025-11-22 13:38:40] 2025-11-22 13:38:04,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:38:40] 2025-11-22 13:38:04,789 | INFO     | collected zombie processes
[2025-11-22 13:38:40] 2025-11-22 13:38:04,789 | INFO     | will attempt to kill all subprocesses of pid=4102
[2025-11-22 13:38:40] 2025-11-22 13:38:04,873 | INFO     | process IDs to be killed: [4102] (in reverse order)
[2025-11-22 13:38:40] 2025-11-22 13:38:04,906 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:38:40] 2025-11-22 13:38:04,906 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:38:40] 2025-11-22 13:38:04,909 | INFO     | did not find any defunct processes belonging to 4102
[2025-11-22 13:38:40] 2025-11-22 13:38:04,911 | INFO     | did not find any defunct processes belonging to 4102
[2025-11-22 13:38:40] 2025-11-22 13:38:04,912 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:38:40] 2025-11-22 13:38:04,912 | INFO     | ready for new job
[2025-11-22 13:38:40] 2025-11-22 13:38:04,912 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:38:40] 2025-11-22 13:38:04,913 | INFO     | ***************************************
[2025-11-22 13:38:40] 2025-11-22 13:38:04,913 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:38:40] 2025-11-22 13:38:04,913 | INFO     | ***************************************
[2025-11-22 13:38:40] 2025-11-22 13:38:04,913 | INFO     | 
[2025-11-22 13:38:40] 2025-11-22 13:38:04,914 | INFO     | architecture information:
[2025-11-22 13:38:40] 2025-11-22 13:38:04,915 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:38:40] 2025-11-22 13:38:04,922 | INFO     | cat /etc/os-release:
[2025-11-22 13:38:40] NAME="CentOS Linux"
[2025-11-22 13:38:40] VERSION="7 (Core)"
[2025-11-22 13:38:40] ID="centos"
[2025-11-22 13:38:40] ID_LIKE="rhel fedora"
[2025-11-22 13:38:40] VERSION_ID="7"
[2025-11-22 13:38:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:38:40] ANSI_COLOR="0;31"
[2025-11-22 13:38:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:38:40] HOME_URL="https://www.centos.org/"
[2025-11-22 13:38:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:38:40] 
[2025-11-22 13:38:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:38:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:38:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:38:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:38:40] 
[2025-11-22 13:38:40] 2025-11-22 13:38:04,923 | INFO     | ***************************************
[2025-11-22 13:38:40] 2025-11-22 13:38:05,425 | INFO     | executing command: df -mP /virtma/boinc/slots/1
[2025-11-22 13:38:40] 2025-11-22 13:38:05,434 | INFO     | sufficient remaining disk space (956631613440 B)
[2025-11-22 13:38:40] 2025-11-22 13:38:05,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:38:40] 2025-11-22 13:38:05,435 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:38:40] 2025-11-22 13:38:05,435 | INFO     | update_server=False
[2025-11-22 13:38:40] 2025-11-22 13:38:05,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:38:40] 2025-11-22 13:38:05,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:38:40] 2025-11-22 13:38:05,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:38:40] 2025-11-22 13:38:05,613 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 13:38:40] 2025-11-22 13:38:05,614 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 13:38:40] 2025-11-22 13:38:05,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:38:40] 2025-11-22 13:38:05,614 | INFO     | will abort loop
[2025-11-22 13:38:40] 2025-11-22 13:38:05,703 | INFO     | all job control threads have been joined
[2025-11-22 13:38:40] 2025-11-22 13:38:05,752 | INFO     | all data control threads have been joined
[2025-11-22 13:38:40] 2025-11-22 13:38:06,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:38:40] 2025-11-22 13:38:06,438 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:06,439 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:06,619 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:06,702 | INFO     | all payload control threads have been joined
[2025-11-22 13:38:40] 2025-11-22 13:38:06,709 | INFO     | [job] control thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:06,726 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:06,758 | INFO     | [data] control thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:06,914 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:06,967 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:07,061 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:07,154 | INFO     | [job] validate thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:07,210 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:07,687 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:07,706 | INFO     | [payload] control thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:07,882 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:08,051 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:09,438 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:38:40] 2025-11-22 13:38:33,926 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:38:40] 2025-11-22 13:38:34,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140341789501248)>', '<ExcThread(monitor, started 140341235656448)>']
[2025-11-22 13:38:40] 2025-11-22 13:38:36,364 | INFO     | PID=45802 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 13:38:40] 2025-11-22 13:38:36,364 | INFO     | .. there are 3 such processes running
[2025-11-22 13:38:40] 2025-11-22 13:38:36,365 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:38:40] 2025-11-22 13:38:36,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:38:40] 2025-11-22 13:38:36,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:38:40] 2025-11-22 13:38:36,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:38:40] 2025-11-22 13:38:36,365 | INFO     | [monitor] control thread has ended
[2025-11-22 13:38:40] 2025-11-22 13:38:39,875 | INFO     | all workflow threads have been joined
[2025-11-22 13:38:40] 2025-11-22 13:38:39,875 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:38:40] 2025-11-22 13:38:39,875 | INFO     | traces error code: 0
[2025-11-22 13:38:40] 2025-11-22 13:38:39,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:38:40] 2025-11-22 13:38:39,946 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:38:40] 2025-11-22 13:38:39,947 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:38:40] 2025-11-22 13:38:39,948 [wrapper] pilotpid: 45802
[2025-11-22 13:38:40] 2025-11-22 13:38:39,949 [wrapper] Pilot exit status: 0
[2025-11-22 13:38:40] 2025-11-22 13:38:39,953 [wrapper] pandaids: 6894285610
[2025-11-22 13:38:40] 2025-11-22 13:38:39,971 [wrapper] cleanup supervisor_pilot 30492 45803
[2025-11-22 13:38:40] 2025-11-22 13:38:39,973 [wrapper] Test setup, not cleaning
[2025-11-22 13:38:40] 2025-11-22 13:38:39,974 [wrapper] apfmon messages muted
[2025-11-22 13:38:40] 2025-11-22 13:38:39,975 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:38:40] 2025-11-22 13:38:39,977 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:38:40]  *** Error codes and diagnostics ***
[2025-11-22 13:38:40]     "exeErrorCode": 0,
[2025-11-22 13:38:40]     "exeErrorDiag": "",
[2025-11-22 13:38:40]     "pilotErrorCode": 0,
[2025-11-22 13:38:40]     "pilotErrorDiag": "",
[2025-11-22 13:38:40]  *** Listing of results directory ***
[2025-11-22 13:38:40] total 1310208
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc    576529 Nov 21 09:54 pilot3.tar.gz
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc      5112 Nov 21 10:02 queuedata.json
[2025-11-22 13:38:40] -rwx------ 1 boinc boinc     36292 Nov 21 10:02 runpilot2-wrapper.sh
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc       100 Nov 22 09:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:38:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 09:02 run_atlas
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc       105 Nov 22 09:02 job.xml
[2025-11-22 13:38:40] -rw-r--r-- 2 boinc boinc     15847 Nov 22 09:02 start_atlas.sh
[2025-11-22 13:38:40] drwxrwx--x 2 boinc boinc        68 Nov 22 09:02 shared
[2025-11-22 13:38:40] -rw-r--r-- 2 boinc boinc    590107 Nov 22 09:02 input.tar.gz
[2025-11-22 13:38:40] -rw-r--r-- 2 boinc boinc 410732389 Nov 22 09:02 EVNT.47493127._002362.pool.root.1
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc      8919 Nov 22 09:02 init_data.xml
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc         0 Nov 22 09:02 boinc_setup_complete
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc         0 Nov 22 09:02 boinc_lockfile
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc      2785 Nov 22 09:02 pandaJob.out
[2025-11-22 13:38:40] -rw------- 1 boinc boinc    989760 Nov 22 09:02 agis_schedconf.cvmfs.json
[2025-11-22 13:38:40] drwx------ 5 boinc boinc      4096 Nov 22 09:03 pilot3
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc       533 Nov 22 13:10 boinc_task_state.xml
[2025-11-22 13:38:40] -rw------- 1 boinc boinc 918380192 Nov 22 13:37 HITS.47533967._003333.pool.root.1
[2025-11-22 13:38:40] -rw------- 1 boinc boinc      1048 Nov 22 13:37 memory_monitor_summary.json
[2025-11-22 13:38:40] -rw------- 1 boinc boinc   1526164 Nov 22 13:37 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:38:40] -rw------- 1 boinc boinc   1979500 Nov 22 13:37 log.47533967._003333.job.log.tgz.1
[2025-11-22 13:38:40] -rw------- 1 boinc boinc      8630 Nov 22 13:38 heartbeat.json
[2025-11-22 13:38:40] -rw------- 1 boinc boinc        95 Nov 22 13:38 pilot_heartbeat.json
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc        29 Nov 22 13:38 wrapper_checkpoint.txt
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc      8192 Nov 22 13:38 boinc_mmap_file
[2025-11-22 13:38:40] -rw------- 1 boinc boinc      5007 Nov 22 13:38 pilotlog.txt
[2025-11-22 13:38:40] -rw------- 1 boinc boinc   2337066 Nov 22 13:38 log.47533967._003333.job.log.1
[2025-11-22 13:38:40] -rw------- 1 boinc boinc       353 Nov 22 13:38 output.list
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc       620 Nov 22 13:38 runtime_log
[2025-11-22 13:38:40] -rw------- 1 boinc boinc   4331520 Nov 22 13:38 result.tar.gz
[2025-11-22 13:38:40] -rw------- 1 boinc boinc       664 Nov 22 13:38 WHKMDmM9cg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJWHKDmHwLoPo.diag
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc      8814 Nov 22 13:38 runtime_log.err
[2025-11-22 13:38:40] -rw-r--r-- 1 boinc boinc     22022 Nov 22 13:38 stderr.txt
[2025-11-22 13:38:40] HITS file was successfully produced:
[2025-11-22 13:38:40] -rw------- 1 boinc boinc 918380192 Nov 22 13:37 shared/HITS.pool.root.1
[2025-11-22 13:38:40]  *** Contents of shared directory: ***
[2025-11-22 13:38:40] total 1302792
[2025-11-22 13:38:40] -rw-r--r-- 2 boinc boinc     15847 Nov 22 09:02 start_atlas.sh
[2025-11-22 13:38:40] -rw-r--r-- 2 boinc boinc    590107 Nov 22 09:02 input.tar.gz
[2025-11-22 13:38:40] -rw-r--r-- 2 boinc boinc 410732389 Nov 22 09:02 ATLAS.root_0
[2025-11-22 13:38:40] -rw------- 1 boinc boinc 918380192 Nov 22 13:37 HITS.pool.root.1
[2025-11-22 13:38:40] -rw------- 1 boinc boinc   4331520 Nov 22 13:38 result.tar.gz
13:38:41 (41878): run_atlas exited; CPU time 126888.161593
13:38:41 (41878): called boinc_finish(0)

</stderr_txt>
]]>

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