Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:38 (1042267): wrapper (7.7.26015): starting
20:54:38 (1042267): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 20:54:38] Arguments: --nthreads 3
[2025-11-24 20:54:38] Threads: 3
[2025-11-24 20:54:38] Checking for CVMFS
[2025-11-24 20:54:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:54:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:54:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:54:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:54:38] 2.9.2.0 2059758 8743 89476 153257 3 81 18736484 36864000 0 130560 0 3242504 99.918 475164 4658 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 20:54:38] CVMFS is ok
[2025-11-24 20:54:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:54:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:54:38] Further information can be found at the LHC@home message board.
[2025-11-24 20:54:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:54:38] Checking for apptainer binary...
[2025-11-24 20:54:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:54:38] Running /usr/bin/apptainer --version
[2025-11-24 20:54:38] apptainer version 1.4.1-1.1
[2025-11-24 20:54:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:54:38] atlasA303
[2025-11-24 20:54:38] apptainer works
[2025-11-24 20:54:38] Set ATHENA_PROC_NUMBER=3
[2025-11-24 20:54:38] Set ATHENA_CORE_NUMBER=3
[2025-11-24 20:54:38] Starting ATLAS job with PandaID=6894286252
[2025-11-24 20:54:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:05:22]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:05:22] 2025-11-25 04:04:27,977 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:05:22] 2025-11-25 04:04:27,977 | INFO     | ready for new job
[2025-11-25 05:05:22] 2025-11-25 04:04:27,977 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:05:22] 2025-11-25 04:04:27,978 | INFO     | ***************************************
[2025-11-25 05:05:22] 2025-11-25 04:04:27,978 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:05:22] 2025-11-25 04:04:27,978 | INFO     | ***************************************
[2025-11-25 05:05:22] 2025-11-25 04:04:27,978 | INFO     | 
[2025-11-25 05:05:22] 2025-11-25 04:04:27,979 | INFO     | architecture information:
[2025-11-25 05:05:22] 2025-11-25 04:04:27,979 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:05:22] 2025-11-25 04:04:27,988 | INFO     | cat /etc/os-release:
[2025-11-25 05:05:22] NAME="CentOS Linux"
[2025-11-25 05:05:22] VERSION="7 (Core)"
[2025-11-25 05:05:22] ID="centos"
[2025-11-25 05:05:22] ID_LIKE="rhel fedora"
[2025-11-25 05:05:22] VERSION_ID="7"
[2025-11-25 05:05:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:05:22] ANSI_COLOR="0;31"
[2025-11-25 05:05:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:05:22] HOME_URL="https://www.centos.org/"
[2025-11-25 05:05:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:05:22] 
[2025-11-25 05:05:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:05:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:05:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:05:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:05:22] 
[2025-11-25 05:05:22] 2025-11-25 04:04:27,988 | INFO     | ***************************************
[2025-11-25 05:05:22] 2025-11-25 04:04:28,491 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 05:05:22] 2025-11-25 04:04:28,504 | INFO     | sufficient remaining disk space (383520866304 B)
[2025-11-25 05:05:22] 2025-11-25 04:04:28,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:05:22] 2025-11-25 04:04:28,504 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:05:22] 2025-11-25 04:04:28,504 | INFO     | update_server=False
[2025-11-25 05:05:22] 2025-11-25 04:04:28,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:05:22] 2025-11-25 04:04:28,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:05:22] 2025-11-25 04:04:28,505 | INFO     | aborting loop
[2025-11-25 05:05:22] 2025-11-25 04:04:28,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:05:22] 2025-11-25 04:04:28,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:05:22] 2025-11-25 04:04:28,820 | INFO     | all data control threads have been joined
[2025-11-25 05:05:22] 2025-11-25 04:04:28,845 | INFO     | all payload control threads have been joined
[2025-11-25 05:05:22] 2025-11-25 04:04:29,506 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:29,510 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:29,551 | INFO     | all job control threads have been joined
[2025-11-25 05:05:22] 2025-11-25 04:04:29,640 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:29,689 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:29,826 | INFO     | [data] control thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:29,851 | INFO     | [payload] control thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:29,929 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:30,172 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:30,386 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:30,511 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:30,557 | INFO     | [job] control thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:30,751 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:30,894 | INFO     | [job] validate thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:30,895 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:31,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:05:22] 2025-11-25 04:04:32,510 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:32,808 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:05:22] 2025-11-25 04:04:58,434 | INFO     | PID=1046007 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 05:05:22] 2025-11-25 04:04:58,434 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:05:22] 2025-11-25 04:04:58,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:05:22] 2025-11-25 04:04:58,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:05:22] 2025-11-25 04:05:16,677 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:05:22] 2025-11-25 04:05:16,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139891445679936)>', '<ExcThread(monitor, started 139890960357120)>']
[2025-11-25 05:05:22] 2025-11-25 04:05:17,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:05:22] 2025-11-25 04:05:17,532 | INFO     | [monitor] control thread has ended
[2025-11-25 05:05:22] 2025-11-25 04:05:21,971 | INFO     | all workflow threads have been joined
[2025-11-25 05:05:22] 2025-11-25 04:05:21,971 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:05:22] 2025-11-25 04:05:21,971 | INFO     | traces error code: 0
[2025-11-25 05:05:22] 2025-11-25 04:05:21,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:05:22] 2025-11-25 04:05:22,022 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:05:22] 2025-11-25 04:05:22,025 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:05:22] 2025-11-25 04:05:22,027 [wrapper] pilotpid: 1046007
[2025-11-25 05:05:22] 2025-11-25 04:05:22,029 [wrapper] Pilot exit status: 0
[2025-11-25 05:05:22] 2025-11-25 04:05:22,036 [wrapper] pandaids: 6894286252
[2025-11-25 05:05:22] 2025-11-25 04:05:22,053 [wrapper] cleanup supervisor_pilot 1213640 1046008
[2025-11-25 05:05:22] 2025-11-25 04:05:22,055 [wrapper] Test setup, not cleaning
[2025-11-25 05:05:22] 2025-11-25 04:05:22,057 [wrapper] apfmon messages muted
[2025-11-25 05:05:22] 2025-11-25 04:05:22,060 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:05:22] 2025-11-25 04:05:22,062 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:05:22]  *** Error codes and diagnostics ***
[2025-11-25 05:05:22]     "exeErrorCode": 0,
[2025-11-25 05:05:22]     "exeErrorDiag": "",
[2025-11-25 05:05:22]     "pilotErrorCode": 0,
[2025-11-25 05:05:22]     "pilotErrorDiag": "",
[2025-11-25 05:05:22]  *** Listing of results directory ***
[2025-11-25 05:05:22] total 1314240
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc    576529 Nov 21 11:18 pilot3.tar.gz
[2025-11-25 05:05:22] -rwx------ 1 boinc boinc     36292 Nov 21 11:28 runpilot2-wrapper.sh
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc      5112 Nov 21 11:28 queuedata.json
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc       100 Nov 24 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:05:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 20:54 run_atlas
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc       105 Nov 24 20:54 job.xml
[2025-11-25 05:05:22] -rw-r--r-- 2 boinc boinc 412160834 Nov 24 20:54 EVNT.47493127._002370.pool.root.1
[2025-11-25 05:05:22] -rw-r--r-- 2 boinc boinc    590100 Nov 24 20:54 input.tar.gz
[2025-11-25 05:05:22] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:54 start_atlas.sh
[2025-11-25 05:05:22] drwxrwx--x 2 boinc boinc      4096 Nov 24 20:54 shared
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc         0 Nov 24 20:54 boinc_setup_complete
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc      6448 Nov 24 20:54 init_data.xml
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc         0 Nov 24 20:54 boinc_lockfile
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc      2785 Nov 24 20:54 pandaJob.out
[2025-11-25 05:05:22] -rw------- 1 boinc boinc    991801 Nov 24 20:54 agis_schedconf.cvmfs.json
[2025-11-25 05:05:22] drwx------ 5 boinc boinc      4096 Nov 24 20:54 pilot3
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc       531 Nov 25 05:00 boinc_task_state.xml
[2025-11-25 05:05:22] -rw------- 1 boinc boinc 919098064 Nov 25 05:03 HITS.47533967._003413.pool.root.1
[2025-11-25 05:05:22] -rw------- 1 boinc boinc        95 Nov 25 05:04 pilot_heartbeat.json
[2025-11-25 05:05:22] -rw------- 1 boinc boinc      1021 Nov 25 05:04 memory_monitor_summary.json
[2025-11-25 05:05:22] -rw------- 1 boinc boinc   1516227 Nov 25 05:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:05:22] -rw------- 1 boinc boinc   1168639 Nov 25 05:04 log.47533967._003413.job.log.tgz.1
[2025-11-25 05:05:22] -rw------- 1 boinc boinc      8566 Nov 25 05:04 heartbeat.json
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc      8192 Nov 25 05:04 boinc_mmap_file
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc        28 Nov 25 05:04 wrapper_checkpoint.txt
[2025-11-25 05:05:22] -rw------- 1 boinc boinc      4752 Nov 25 05:05 pilotlog.txt
[2025-11-25 05:05:22] -rw------- 1 boinc boinc   4137802 Nov 25 05:05 log.47533967._003413.job.log.1
[2025-11-25 05:05:22] -rw------- 1 boinc boinc       353 Nov 25 05:05 output.list
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc       620 Nov 25 05:05 runtime_log
[2025-11-25 05:05:22] -rw------- 1 boinc boinc   5324800 Nov 25 05:05 result.tar.gz
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc      8913 Nov 25 05:05 runtime_log.err
[2025-11-25 05:05:22] -rw------- 1 boinc boinc       668 Nov 25 05:05 HN9KDmKYdg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlHJKDmkLNkFn.diag
[2025-11-25 05:05:22] -rw-r--r-- 1 boinc boinc      9752 Nov 25 05:05 stderr.txt
[2025-11-25 05:05:22] HITS file was successfully produced:
[2025-11-25 05:05:22] -rw------- 1 boinc boinc 919098064 Nov 25 05:03 shared/HITS.pool.root.1
[2025-11-25 05:05:22]  *** Contents of shared directory: ***
[2025-11-25 05:05:22] total 1305868
[2025-11-25 05:05:22] -rw-r--r-- 2 boinc boinc 412160834 Nov 24 20:54 ATLAS.root_0
[2025-11-25 05:05:22] -rw-r--r-- 2 boinc boinc    590100 Nov 24 20:54 input.tar.gz
[2025-11-25 05:05:22] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:54 start_atlas.sh
[2025-11-25 05:05:22] -rw------- 1 boinc boinc 919098064 Nov 25 05:03 HITS.pool.root.1
[2025-11-25 05:05:22] -rw------- 1 boinc boinc   5324800 Nov 25 05:05 result.tar.gz
05:05:23 (1042267): run_atlas exited; CPU time 86735.249031
05:05:23 (1042267): called boinc_finish(0)

</stderr_txt>
]]>

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