Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:36:07 (2984): wrapper (7.7.26015): starting
01:36:07 (2984): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:36:07] Arguments: --nthreads 8
[2025-11-25 01:36:07] Threads: 8
[2025-11-25 01:36:07] Checking for CVMFS
[2025-11-25 01:36:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:36:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:36:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:36:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:36:11] 2.11.2.0 10662 80944 91956 153264 3 86 13488301 25165825 1027 130560 15 25921506 99.885 16729522 1843 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:36:11] CVMFS is ok
[2025-11-25 01:36:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:36:11] Checking for apptainer binary...
[2025-11-25 01:36:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:36:11] Running /usr/bin/apptainer --version
[2025-11-25 01:36:11] apptainer version 1.3.2-1.el7
[2025-11-25 01:36:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:36:36] cg-vwn346.simple-grid.lan
[2025-11-25 01:36:36] apptainer works
[2025-11-25 01:36:36] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:36:36] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:36:36] Starting ATLAS job with PandaID=6894257443
[2025-11-25 01:36:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:38:48]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:38:48] 2025-11-26 00:38:06,341 | INFO     | time since job start (86215s) is within the limit (172800.0s)
[2025-11-26 01:38:48] 2025-11-26 00:38:06,876 | INFO     | monitor loop #5811: job 0:6894257443 is in state 'finished'
[2025-11-26 01:38:48] 2025-11-26 00:38:06,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:38:48] 2025-11-26 00:38:08,347 | INFO     | time since job start (86217s) is within the limit (172800.0s)
[2025-11-26 01:38:48] 2025-11-26 00:38:09,383 | INFO     | monitor loop #5812: job 0:6894257443 is in state 'finished'
[2025-11-26 01:38:48] 2025-11-26 00:38:09,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:38:48] 2025-11-26 00:38:10,353 | INFO     | time since job start (86219s) is within the limit (172800.0s)
[2025-11-26 01:38:48] 2025-11-26 00:38:11,893 | INFO     | monitor loop #5813: job 0:6894257443 is in state 'finished'
[2025-11-26 01:38:48] 2025-11-26 00:38:11,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:38:48] 2025-11-26 00:38:12,358 | INFO     | time since job start (86221s) is within the limit (172800.0s)
[2025-11-26 01:38:48] 2025-11-26 00:38:14,366 | INFO     | time since job start (86223s) is within the limit (172800.0s)
[2025-11-26 01:38:48] 2025-11-26 00:38:14,399 | INFO     | monitor loop #5814: job 0:6894257443 is in state 'finished'
[2025-11-26 01:38:48] 2025-11-26 00:38:14,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:38:48] 2025-11-26 00:38:16,376 | INFO     | time since job start (86225s) is within the limit (172800.0s)
[2025-11-26 01:38:48] 2025-11-26 00:38:16,907 | INFO     | monitor loop #5815: job 0:6894257443 is in state 'finished'
[2025-11-26 01:38:48] 2025-11-26 00:38:16,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:38:48] 2025-11-26 00:38:17,751 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 01:38:48] 2025-11-26 00:38:17,752 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 01:38:48] 2025-11-26 00:38:17,754 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6894257443/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:38:48] 2025-11-26 00:38:17,755 | INFO     | extracted standard info from prmon json
[2025-11-26 01:38:48] 2025-11-26 00:38:17,755 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 01:38:48] 2025-11-26 00:38:17,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 01:38:48] 2025-11-26 00:38:17,783 | INFO     | fitting pss+swap vs Time
[2025-11-26 01:38:48] 2025-11-26 00:38:17,786 | INFO     | sum of square deviations: 856356749137.1776
[2025-11-26 01:38:48] 2025-11-26 00:38:17,841 | INFO     | sum of deviations: 4749079148095.393
[2025-11-26 01:38:48] 2025-11-26 00:38:17,841 | INFO     | mean x: 1764074645.247327
[2025-11-26 01:38:48] 2025-11-26 00:38:17,841 | INFO     | mean y: 2835573.039201711
[2025-11-26 01:38:48] 2025-11-26 00:38:17,842 | INFO     | intersect: -9780155127.820972
[2025-11-26 01:38:48] 2025-11-26 00:38:17,843 | INFO     | chi2: 25.650563909464445
[2025-11-26 01:38:48] 2025-11-26 00:38:17,846 | INFO     | sum of square deviations: 847234311826.8705
[2025-11-26 01:38:48] 2025-11-26 00:38:17,900 | INFO     | sum of deviations: 5232429718203.31
[2025-11-26 01:38:48] 2025-11-26 00:38:17,901 | INFO     | mean x: 1764074492.7517884
[2025-11-26 01:38:48] 2025-11-26 00:38:17,901 | INFO     | mean y: 2843650.8741058656
[2025-11-26 01:38:48] 2025-11-26 00:38:17,901 | INFO     | intersect: -10891894288.971144
[2025-11-26 01:38:48] 2025-11-26 00:38:17,903 | INFO     | chi2: 22.27781791219387
[2025-11-26 01:38:48] 2025-11-26 00:38:17,903 | INFO     | current chi2=22.27781791219387 (change=13.148818128033868 %)
[2025-11-26 01:38:48] 2025-11-26 00:38:17,903 | INFO     | right removable region: 1397
[2025-11-26 01:38:48] 2025-11-26 00:38:17,905 | INFO     | sum of square deviations: 847233244326.8707
[2025-11-26 01:38:48] 2025-11-26 00:38:17,969 | INFO     | sum of deviations: 4143885204709.4976
[2025-11-26 01:38:48] 2025-11-26 00:38:17,970 | INFO     | mean x: 1764074797.7517884
[2025-11-26 01:38:48] 2025-11-26 00:38:17,970 | INFO     | mean y: 2845689.197424893
[2025-11-26 01:38:48] 2025-11-26 00:38:17,970 | INFO     | intersect: -8625384498.125368
[2025-11-26 01:38:48] 2025-11-26 00:38:17,972 | INFO     | chi2: 20.44224806024706
[2025-11-26 01:38:48] 2025-11-26 00:38:17,972 | INFO     | current chi2=20.44224806024706 (change=20.304878550040925 %)
[2025-11-26 01:38:48] 2025-11-26 00:38:17,973 | INFO     | left removable region: 10
[2025-11-26 01:38:48] 2025-11-26 00:38:17,975 | INFO     | sum of square deviations: 827391373447.9979
[2025-11-26 01:38:48] 2025-11-26 00:38:18,031 | INFO     | sum of deviations: 4165076197016.9814
[2025-11-26 01:38:48] 2025-11-26 00:38:18,031 | INFO     | mean x: 1764074767.261716
[2025-11-26 01:38:48] 2025-11-26 00:38:18,031 | INFO     | mean y: 2865028.201153569
[2025-11-26 01:38:48] 2025-11-26 00:38:18,031 | INFO     | intersect: -8877461814.295036
[2025-11-26 01:38:48] 2025-11-26 00:38:18,033 | INFO     | chi2: 11.948305430678198
[2025-11-26 01:38:48] 2025-11-26 00:38:18,033 | INFO     | current memory leak: 5.03 B/s (using 1387 data points, chi2=11.95)
[2025-11-26 01:38:48] 2025-11-26 00:38:18,035 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | ..............................
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . Timing measurements:
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . get job = 0 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . initial setup = 16 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . payload setup = 200 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . stage-in = 0 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . payload execution = 85698 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . stage-out = 5 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | . log creation = 2 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,036 | INFO     | ..............................
[2025-11-26 01:38:48] 2025-11-26 00:38:18,382 | INFO     | time since job start (86227s) is within the limit (172800.0s)
[2025-11-26 01:38:48] 2025-11-26 00:38:18,437 | INFO     | 
[2025-11-26 01:38:48] 2025-11-26 00:38:18,437 | INFO     | job summary report
[2025-11-26 01:38:48] 2025-11-26 00:38:18,437 | INFO     | --------------------------------------------------
[2025-11-26 01:38:48] 2025-11-26 00:38:18,437 | INFO     | PanDA job id: 6894257443
[2025-11-26 01:38:48] 2025-11-26 00:38:18,437 | INFO     | task id: 47533967
[2025-11-26 01:38:48] 2025-11-26 00:38:18,437 | INFO     | errors: (none)
[2025-11-26 01:38:48] 2025-11-26 00:38:18,437 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | pilot state: finished 
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | transexitcode: 0
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | exeerrorcode: 0
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | exeerrordiag: 
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | exitcode: 0
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | exitmsg: OK
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | cpuconsumptiontime: 333577 s
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | nevents: 1000
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | neventsw: 0
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | pid: 13198
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | pgrp: 13198
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | corecount: 8
[2025-11-26 01:38:48] 2025-11-26 00:38:18,438 | INFO     | event service: False
[2025-11-26 01:38:48] 2025-11-26 00:38:18,439 | INFO     | sizes: {0: 2284083, 1: 2284338, 12: 2284338, 23: 2284366, 34: 2284394, 44: 2284422, 55: 2284578, 66: 2284606, 76: 2284634, 87: 2284690, 98: 2284718, 109: 2285026, 
[2025-11-26 01:38:48] 2025-11-26 00:38:18,439 | INFO     | --------------------------------------------------
[2025-11-26 01:38:48] 2025-11-26 00:38:18,439 | INFO     | 
[2025-11-26 01:38:48] 2025-11-26 00:38:18,439 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-26 01:38:48] 2025-11-26 00:38:18,479 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,480 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,480 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,480 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,481 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:38:48] 2025-11-26 00:38:18,482 | INFO     | job 6894257443 has completed (purged errors)
[2025-11-26 01:38:48] 2025-11-26 00:38:18,482 | INFO     | overall cleanup function is called
[2025-11-26 01:38:48] 2025-11-26 00:38:19,500 | INFO     | --- collectZombieJob: --- 10, [13198]
[2025-11-26 01:38:48] 2025-11-26 00:38:19,500 | INFO     | zombie collector waiting for pid 13198
[2025-11-26 01:38:48] 2025-11-26 00:38:19,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:38:48] 2025-11-26 00:38:19,500 | INFO     | collected zombie processes
[2025-11-26 01:38:48] 2025-11-26 00:38:19,500 | INFO     | will attempt to kill all subprocesses of pid=13198
[2025-11-26 01:38:48] 2025-11-26 00:38:19,600 | INFO     | process IDs to be killed: [13198] (in reverse order)
[2025-11-26 01:38:48] 2025-11-26 00:38:19,720 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:38:48] 2025-11-26 00:38:19,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:38:48] 2025-11-26 00:38:19,723 | INFO     | did not find any defunct processes belonging to 13198
[2025-11-26 01:38:48] 2025-11-26 00:38:19,727 | INFO     | did not find any defunct processes belonging to 13198
[2025-11-26 01:38:48] 2025-11-26 00:38:19,729 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:38:48] 2025-11-26 00:38:19,729 | INFO     | ready for new job
[2025-11-26 01:38:48] 2025-11-26 00:38:19,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:38:48] 2025-11-26 00:38:19,736 | INFO     | ***************************************
[2025-11-26 01:38:48] 2025-11-26 00:38:19,736 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:38:48] 2025-11-26 00:38:19,737 | INFO     | ***************************************
[2025-11-26 01:38:48] 2025-11-26 00:38:19,737 | INFO     | 
[2025-11-26 01:38:48] 2025-11-26 00:38:19,737 | INFO     | pilot is running in a VM
[2025-11-26 01:38:48] 2025-11-26 00:38:19,737 | INFO     | architecture information:
[2025-11-26 01:38:48] 2025-11-26 00:38:19,738 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:38:48] 2025-11-26 00:38:19,761 | INFO     | cat /etc/os-release:
[2025-11-26 01:38:48] NAME="CentOS Linux"
[2025-11-26 01:38:48] VERSION="7 (Core)"
[2025-11-26 01:38:48] ID="centos"
[2025-11-26 01:38:48] ID_LIKE="rhel fedora"
[2025-11-26 01:38:48] VERSION_ID="7"
[2025-11-26 01:38:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:38:48] ANSI_COLOR="0;31"
[2025-11-26 01:38:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:38:48] HOME_URL="https://www.centos.org/"
[2025-11-26 01:38:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:38:48] 
[2025-11-26 01:38:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:38:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:38:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:38:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:38:48] 
[2025-11-26 01:38:48] 2025-11-26 00:38:19,761 | INFO     | ***************************************
[2025-11-26 01:38:48] 2025-11-26 00:38:20,265 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-26 01:38:48] 2025-11-26 00:38:20,322 | INFO     | sufficient remaining disk space (494810431488 B)
[2025-11-26 01:38:48] 2025-11-26 00:38:20,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:38:48] 2025-11-26 00:38:20,323 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:38:48] 2025-11-26 00:38:20,323 | INFO     | update_server=False
[2025-11-26 01:38:48] 2025-11-26 00:38:20,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:38:48] 2025-11-26 00:38:20,324 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 01:38:48] 2025-11-26 00:38:20,324 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:38:48] 2025-11-26 00:38:20,324 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:38:48] 2025-11-26 00:38:20,324 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:38:48] 2025-11-26 00:38:20,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:38:48] 2025-11-26 00:38:20,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:38:48] 2025-11-26 00:38:20,443 | INFO     | aborting loop
[2025-11-26 01:38:48] 2025-11-26 00:38:20,515 | INFO     | all payload control threads have been joined
[2025-11-26 01:38:48] 2025-11-26 00:38:21,268 | INFO     | all job control threads have been joined
[2025-11-26 01:38:48] 2025-11-26 00:38:21,281 | INFO     | all data control threads have been joined
[2025-11-26 01:38:48] 2025-11-26 00:38:21,329 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:21,448 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:21,521 | INFO     | [payload] control thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:21,805 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:38:48] 2025-11-26 00:38:22,105 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,169 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,238 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,274 | INFO     | [job] control thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,286 | INFO     | [data] control thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,699 | INFO     | [job] validate thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,733 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,818 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:22,843 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:23,165 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:38:48] 2025-11-26 00:38:23,812 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:24,170 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:24,334 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:38:48] 2025-11-26 00:38:40,907 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:38:48] 2025-11-26 00:38:42,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139871373367104)>', '<ExcThread(monitor, started 139870634764032)>']
[2025-11-26 01:38:48] 2025-11-26 00:38:43,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:38:48] 2025-11-26 00:38:43,451 | INFO     | [monitor] control thread has ended
[2025-11-26 01:38:48] 2025-11-26 00:38:47,867 | INFO     | all workflow threads have been joined
[2025-11-26 01:38:48] 2025-11-26 00:38:47,867 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:38:48] 2025-11-26 00:38:47,868 | INFO     | traces error code: 0
[2025-11-26 01:38:48] 2025-11-26 00:38:47,868 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:38:48] 2025-11-26 00:38:48,223 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:38:48] 2025-11-26 00:38:48,237 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:38:48] 2025-11-26 00:38:48,242 [wrapper] pilotpid: 6707
[2025-11-26 01:38:48] 2025-11-26 00:38:48,249 [wrapper] Pilot exit status: 0
[2025-11-26 01:38:48] 2025-11-26 00:38:48,340 [wrapper] pandaids: 6894257443
[2025-11-26 01:38:48] 2025-11-26 00:38:48,383 [wrapper] cleanup supervisor_pilot 29278 6708
[2025-11-26 01:38:48] 2025-11-26 00:38:48,388 [wrapper] Test setup, not cleaning
[2025-11-26 01:38:48] 2025-11-26 00:38:48,392 [wrapper] apfmon messages muted
[2025-11-26 01:38:48] 2025-11-26 00:38:48,396 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:38:48] 2025-11-26 00:38:48,400 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:38:48]  *** Error codes and diagnostics ***
[2025-11-26 01:38:48]     "exeErrorCode": 0,
[2025-11-26 01:38:48]     "exeErrorDiag": "",
[2025-11-26 01:38:48]     "pilotErrorCode": 0,
[2025-11-26 01:38:48]     "pilotErrorDiag": "",
[2025-11-26 01:38:48]  *** Listing of results directory ***
[2025-11-26 01:38:48] total 1311428
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc    576529 Nov 21 04:09 pilot3.tar.gz
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc      5112 Nov 21 04:13 queuedata.json
[2025-11-26 01:38:48] -rwx------. 1 boinc boinc     36292 Nov 21 04:14 runpilot2-wrapper.sh
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:38:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:36 run_atlas
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:36 job.xml
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc      6392 Nov 25 01:36 init_data.xml
[2025-11-26 01:38:48] -rw-r--r--. 2 boinc boinc 405430281 Nov 25 01:36 EVNT.47493127._002153.pool.root.1
[2025-11-26 01:38:48] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:36 start_atlas.sh
[2025-11-26 01:38:48] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:36 shared
[2025-11-26 01:38:48] -rw-r--r--. 2 boinc boinc    590105 Nov 25 01:36 input.tar.gz
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:36 boinc_lockfile
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc      2785 Nov 25 01:36 pandaJob.out
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc    991801 Nov 25 01:40 agis_schedconf.cvmfs.json
[2025-11-26 01:38:48] drwx------. 5 boinc boinc      4096 Nov 25 01:41 pilot3
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:19 boinc_task_state.xml
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc 905485880 Nov 26 01:35 HITS.47533967._001250.pool.root.1
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc      1030 Nov 26 01:36 memory_monitor_summary.json
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc   1516240 Nov 26 01:36 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc   2495762 Nov 26 01:36 log.47533967._001250.job.log.tgz.1
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc        95 Nov 26 01:37 pilot_heartbeat.json
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc      8630 Nov 26 01:38 heartbeat.json
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc      4616 Nov 26 01:38 pilotlog.txt
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc        29 Nov 26 01:38 wrapper_checkpoint.txt
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc  11539720 Nov 26 01:38 log.47533967._001250.job.log.1
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc      8192 Nov 26 01:38 boinc_mmap_file
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc       353 Nov 26 01:38 output.list
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc       620 Nov 26 01:38 runtime_log
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc  14059520 Nov 26 01:38 result.tar.gz
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc      8833 Nov 26 01:38 runtime_log.err
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc       662 Nov 26 01:38 CPxLDmrmWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQwIKDmXqbofm.diag
[2025-11-26 01:38:48] -rw-r--r--. 1 boinc boinc     21383 Nov 26 01:38 stderr.txt
[2025-11-26 01:38:48] HITS file was successfully produced:
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc 905485880 Nov 26 01:35 shared/HITS.pool.root.1
[2025-11-26 01:38:48]  *** Contents of shared directory: ***
[2025-11-26 01:38:48] total 1294524
[2025-11-26 01:38:48] -rw-r--r--. 2 boinc boinc 405430281 Nov 25 01:36 ATLAS.root_0
[2025-11-26 01:38:48] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:36 start_atlas.sh
[2025-11-26 01:38:48] -rw-r--r--. 2 boinc boinc    590105 Nov 25 01:36 input.tar.gz
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc 905485880 Nov 26 01:35 HITS.pool.root.1
[2025-11-26 01:38:48] -rw-------. 1 boinc boinc  14059520 Nov 26 01:38 result.tar.gz
01:38:50 (2984): run_atlas exited; CPU time 333995.993793
01:38:50 (2984): called boinc_finish(0)

</stderr_txt>
]]>

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