Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:34:20 (192485): wrapper (7.7.26015): starting
05:34:20 (192485): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 05:34:20] Arguments: --nthreads 3
[2025-11-22 05:34:20] Threads: 3
[2025-11-22 05:34:20] Checking for CVMFS
[2025-11-22 05:34:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 05:34:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 05:34:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 05:34:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 05:34:20] 2.9.2.0 3971706 310 65968 153159 2 128 34613619 36864001 0 130560 0 1221172 99.997 14628 7980 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 05:34:20] CVMFS is ok
[2025-11-22 05:34:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 05:34:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 05:34:20] Further information can be found at the LHC@home message board.
[2025-11-22 05:34:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 05:34:20] Checking for apptainer binary...
[2025-11-22 05:34:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 05:34:20] Running /usr/bin/apptainer --version
[2025-11-22 05:34:20] apptainer version 1.4.1-1.1
[2025-11-22 05:34:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 05:34:20] thA335
[2025-11-22 05:34:20] apptainer works
[2025-11-22 05:34:20] Set ATHENA_PROC_NUMBER=3
[2025-11-22 05:34:20] Set ATHENA_CORE_NUMBER=3
[2025-11-22 05:34:20] Starting ATLAS job with PandaID=6894286221
[2025-11-22 05:34:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:38:39]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:38:39] 2025-11-22 04:37:46,751 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:38:39] 2025-11-22 04:37:46,774 | INFO     | cat /etc/os-release:
[2025-11-22 05:38:39] NAME="CentOS Linux"
[2025-11-22 05:38:39] VERSION="7 (Core)"
[2025-11-22 05:38:39] ID="centos"
[2025-11-22 05:38:39] ID_LIKE="rhel fedora"
[2025-11-22 05:38:39] VERSION_ID="7"
[2025-11-22 05:38:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:38:39] ANSI_COLOR="0;31"
[2025-11-22 05:38:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:38:39] HOME_URL="https://www.centos.org/"
[2025-11-22 05:38:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:38:39] 
[2025-11-22 05:38:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:38:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:38:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:38:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:38:39] 
[2025-11-22 05:38:39] 2025-11-22 04:37:46,774 | INFO     | ***************************************
[2025-11-22 05:38:39] 2025-11-22 04:37:47,277 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | INFO     | sufficient remaining disk space (827429224448 B)
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | INFO     | update_server=False
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | INFO     | aborting loop
[2025-11-22 05:38:39] 2025-11-22 04:37:47,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:38:39] 2025-11-22 04:37:47,534 | INFO     | all job control threads have been joined
[2025-11-22 05:38:39] 2025-11-22 04:37:47,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:38:39] 2025-11-22 04:37:48,298 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:48,298 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:48,299 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:48,318 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:48,381 | INFO     | all data control threads have been joined
[2025-11-22 05:38:39] 2025-11-22 04:37:48,495 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:48,540 | INFO     | [job] control thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:48,714 | INFO     | all payload control threads have been joined
[2025-11-22 05:38:39] 2025-11-22 04:37:48,960 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,300 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,383 | INFO     | [data] control thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,566 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,605 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,673 | INFO     | [job] validate thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,720 | INFO     | [payload] control thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:49,757 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:37:50,366 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:38:39] 2025-11-22 04:37:54,373 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:38:39] 2025-11-22 04:38:17,807 | INFO     | PID=196219 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 05:38:39] 2025-11-22 04:38:17,808 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:38:39] 2025-11-22 04:38:17,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:38:39] 2025-11-22 04:38:17,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:38:39] 2025-11-22 04:38:32,967 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:38:39] 2025-11-22 04:38:34,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102148183872)>', '<ExcThread(monitor, started 140101396969216)>']
[2025-11-22 05:38:39] 2025-11-22 04:38:34,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:38:39] 2025-11-22 04:38:34,898 | INFO     | [monitor] control thread has ended
[2025-11-22 05:38:39] 2025-11-22 04:38:39,137 | INFO     | all workflow threads have been joined
[2025-11-22 05:38:39] 2025-11-22 04:38:39,138 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:38:39] 2025-11-22 04:38:39,138 | INFO     | traces error code: 0
[2025-11-22 05:38:39] 2025-11-22 04:38:39,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:38:39] 2025-11-22 04:38:39,185 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:38:39] 2025-11-22 04:38:39,188 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:38:39] 2025-11-22 04:38:39,191 [wrapper] pilotpid: 196219
[2025-11-22 05:38:39] 2025-11-22 04:38:39,194 [wrapper] Pilot exit status: 0
[2025-11-22 05:38:39] 2025-11-22 04:38:39,201 [wrapper] pandaids: 6894286221
[2025-11-22 05:38:39] 2025-11-22 04:38:39,218 [wrapper] cleanup supervisor_pilot  196225 196220
[2025-11-22 05:38:39] 2025-11-22 04:38:39,221 [wrapper] Test setup, not cleaning
[2025-11-22 05:38:39] 2025-11-22 04:38:39,224 [wrapper] apfmon messages muted
[2025-11-22 05:38:39] 2025-11-22 04:38:39,227 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:38:39] 2025-11-22 04:38:39,229 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:38:39]  *** Error codes and diagnostics ***
[2025-11-22 05:38:39]     "exeErrorCode": 65,
[2025-11-22 05:38:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 05:38:39]     "pilotErrorCode": 1305,
[2025-11-22 05:38:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 05:38:39]  *** Listing of results directory ***
[2025-11-22 05:38:39] total 405244
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc    576529 Nov 21 11:18 pilot3.tar.gz
[2025-11-22 05:38:39] -rwx------ 1 boinc boinc     36292 Nov 21 11:19 runpilot2-wrapper.sh
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc      5112 Nov 21 11:19 queuedata.json
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc       100 Nov 22 05:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:38:39] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 05:34 run_atlas
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc       105 Nov 22 05:34 job.xml
[2025-11-22 05:38:39] -rw-r--r-- 2 boinc boinc 410771570 Nov 22 05:34 EVNT.47493127._002367.pool.root.1
[2025-11-22 05:38:39] -rw-r--r-- 2 boinc boinc    590098 Nov 22 05:34 input.tar.gz
[2025-11-22 05:38:39] -rw-r--r-- 2 boinc boinc     15847 Nov 22 05:34 start_atlas.sh
[2025-11-22 05:38:39] drwxrwx--x 2 boinc boinc      4096 Nov 22 05:34 shared
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc         0 Nov 22 05:34 boinc_setup_complete
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc      6194 Nov 22 05:34 init_data.xml
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc         0 Nov 22 05:34 boinc_lockfile
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc      2786 Nov 22 05:34 pandaJob.out
[2025-11-22 05:38:39] -rw------- 1 boinc boinc    989752 Nov 22 05:34 agis_schedconf.cvmfs.json
[2025-11-22 05:38:39] -rw------- 1 boinc boinc   1526164 Nov 22 05:34 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:38:39] drwx------ 5 boinc boinc      4096 Nov 22 05:34 pilot3
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc       522 Nov 22 05:35 boinc_task_state.xml
[2025-11-22 05:38:39] -rw------- 1 boinc boinc       953 Nov 22 05:35 memory_monitor_summary.json
[2025-11-22 05:38:39] -rw------- 1 boinc boinc     55778 Nov 22 05:35 log.47533967._003382.job.log.tgz.1
[2025-11-22 05:38:39] -rw------- 1 boinc boinc        95 Nov 22 05:37 pilot_heartbeat.json
[2025-11-22 05:38:39] -rw------- 1 boinc boinc      8393 Nov 22 05:37 heartbeat.json
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc      8192 Nov 22 05:38 boinc_mmap_file
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc        22 Nov 22 05:38 wrapper_checkpoint.txt
[2025-11-22 05:38:39] -rw------- 1 boinc boinc      4751 Nov 22 05:38 pilotlog.txt
[2025-11-22 05:38:39] -rw------- 1 boinc boinc     91962 Nov 22 05:38 log.47533967._003382.job.log.1
[2025-11-22 05:38:39] -rw------- 1 boinc boinc       186 Nov 22 05:38 output.list
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc       620 Nov 22 05:38 runtime_log
[2025-11-22 05:38:39] -rw------- 1 boinc boinc    163840 Nov 22 05:38 result.tar.gz
[2025-11-22 05:38:39] -rw------- 1 boinc boinc       649 Nov 22 05:38 yzALDm8Pdg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmWHKDmMKoWEn.diag
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc      8744 Nov 22 05:38 runtime_log.err
[2025-11-22 05:38:39] -rw-r--r-- 1 boinc boinc      9256 Nov 22 05:38 stderr.txt
[2025-11-22 05:38:39] No HITS result produced
[2025-11-22 05:38:39]  *** Contents of shared directory: ***
[2025-11-22 05:38:39] total 401908
[2025-11-22 05:38:39] -rw-r--r-- 2 boinc boinc 410771570 Nov 22 05:34 ATLAS.root_0
[2025-11-22 05:38:39] -rw-r--r-- 2 boinc boinc    590098 Nov 22 05:34 input.tar.gz
[2025-11-22 05:38:39] -rw-r--r-- 2 boinc boinc     15847 Nov 22 05:34 start_atlas.sh
[2025-11-22 05:38:39] -rw------- 1 boinc boinc    163840 Nov 22 05:38 result.tar.gz
05:38:41 (192485): run_atlas exited; CPU time 30.232791
05:38:41 (192485): called boinc_finish(0)

</stderr_txt>
]]>

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