Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:35 (1216516): wrapper (7.7.26015): starting
00:04:35 (1216516): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 00:04:35] Arguments: --nthreads 9
[2025-11-22 00:04:35] Threads: 9
[2025-11-22 00:04:35] Checking for CVMFS
[2025-11-22 00:04:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:04:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:04:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:04:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:04:36] 2.13.2.0 5664 27570 200896 153159 1 94 21985935 39288832 7060 16776704 0 19103678 99.622 13794851 28092 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:04:36] CVMFS is ok
[2025-11-22 00:04:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:04:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:04:36] Further information can be found at the LHC@home message board.
[2025-11-22 00:04:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:04:36] Checking for apptainer binary...
[2025-11-22 00:04:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:04:36] Running /usr/bin/apptainer --version
[2025-11-22 00:04:37] apptainer version 1.4.4-1.el9
[2025-11-22 00:04:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:04:37] c-210-30.aglt2.org
[2025-11-22 00:04:37] apptainer works
[2025-11-22 00:04:37] Set ATHENA_PROC_NUMBER=9
[2025-11-22 00:04:37] Set ATHENA_CORE_NUMBER=9
[2025-11-22 00:04:37] Starting ATLAS job with PandaID=6894285653
[2025-11-22 00:04:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:17:19]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:17:19] 2025-11-23 01:16:31,452 | INFO     | time since job start (72651s) is within the limit (172800.0s)
[2025-11-22 20:17:19] 2025-11-23 01:16:33,129 | INFO     | monitor loop #4587: job 0:6894285653 is in state 'finished'
[2025-11-22 20:17:19] 2025-11-23 01:16:33,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:17:19] 2025-11-23 01:16:33,474 | INFO     | time since job start (72653s) is within the limit (172800.0s)
[2025-11-22 20:17:19] 2025-11-23 01:16:35,661 | INFO     | monitor loop #4588: job 0:6894285653 is in state 'finished'
[2025-11-22 20:17:19] 2025-11-23 01:16:35,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:17:19] 2025-11-23 01:16:36,012 | INFO     | PID=1220674 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:17:19] 2025-11-23 01:16:36,012 | INFO     | .. there are 8 such processes running
[2025-11-22 20:17:19] 2025-11-23 01:16:37,013 | INFO     | time since job start (72657s) is within the limit (172800.0s)
[2025-11-22 20:17:19] 2025-11-23 01:16:38,241 | INFO     | monitor loop #4589: job 0:6894285653 is in state 'finished'
[2025-11-22 20:17:19] 2025-11-23 01:16:38,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:17:19] 2025-11-23 01:16:39,031 | INFO     | time since job start (72659s) is within the limit (172800.0s)
[2025-11-22 20:17:19] 2025-11-23 01:16:40,793 | INFO     | monitor loop #4590: job 0:6894285653 is in state 'finished'
[2025-11-22 20:17:19] 2025-11-23 01:16:40,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:17:19] 2025-11-23 01:16:41,083 | INFO     | time since job start (72661s) is within the limit (172800.0s)
[2025-11-22 20:17:19] 2025-11-23 01:16:42,340 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 20:17:19] 2025-11-23 01:16:42,359 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.7750000000005
[2025-11-22 20:17:19] 2025-11-23 01:16:42,384 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894285653/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:17:19] 2025-11-23 01:16:42,385 | INFO     | extracted standard info from prmon json
[2025-11-22 20:17:19] 2025-11-23 01:16:42,386 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:17:19] 2025-11-23 01:16:42,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:17:19] 2025-11-23 01:16:42,468 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:17:19] 2025-11-23 01:16:42,470 | INFO     | sum of square deviations: 519922446663.4236
[2025-11-22 20:17:19] 2025-11-23 01:16:42,594 | INFO     | sum of deviations: 2444444151987.2305
[2025-11-22 20:17:19] 2025-11-23 01:16:42,594 | INFO     | mean x: 1763824292.8476431
[2025-11-22 20:17:19] 2025-11-23 01:16:42,595 | INFO     | mean y: 3107221.437710438
[2025-11-22 20:17:19] 2025-11-23 01:16:42,595 | INFO     | intersect: -8289610289.517469
[2025-11-22 20:17:19] 2025-11-23 01:16:42,607 | INFO     | chi2: 17.963310797639945
[2025-11-22 20:17:19] 2025-11-23 01:16:42,609 | INFO     | sum of square deviations: 513386664686.878
[2025-11-22 20:17:19] 2025-11-23 01:16:42,739 | INFO     | sum of deviations: 2916070320170.3135
[2025-11-22 20:17:19] 2025-11-23 01:16:42,740 | INFO     | mean x: 1763824140.3609467
[2025-11-22 20:17:19] 2025-11-23 01:16:42,740 | INFO     | mean y: 3118222.2147083688
[2025-11-22 20:17:19] 2025-11-23 01:16:42,740 | INFO     | intersect: -10015519930.070625
[2025-11-22 20:17:19] 2025-11-23 01:16:42,742 | INFO     | chi2: 14.096549594800543
[2025-11-22 20:17:19] 2025-11-23 01:16:42,758 | INFO     | current chi2=14.096549594800543 (change=21.525882652697995 %)
[2025-11-22 20:17:19] 2025-11-23 01:16:42,758 | INFO     | right removable region: 1182
[2025-11-22 20:17:19] 2025-11-23 01:16:42,760 | INFO     | sum of square deviations: 513384311057.15265
[2025-11-22 20:17:19] 2025-11-23 01:16:43,143 | INFO     | time since job start (72663s) is within the limit (172800.0s)
[2025-11-22 20:17:19] 2025-11-23 01:16:43,144 | INFO     | 72669s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 20:17:19] 2025-11-23 01:16:43,199 | INFO     | sum of deviations: 1935164816084.7834
[2025-11-22 20:17:19] 2025-11-23 01:16:43,203 | INFO     | mean x: 1763824445.361792
[2025-11-22 20:17:19] 2025-11-23 01:16:43,204 | INFO     | mean y: 3119100.2738799662
[2025-11-22 20:17:19] 2025-11-23 01:16:43,204 | INFO     | intersect: -6645488842.936936
[2025-11-22 20:17:19] 2025-11-23 01:16:43,206 | INFO     | chi2: 13.960679814655625
[2025-11-22 20:17:19] 2025-11-23 01:16:43,206 | INFO     | current chi2=13.960679814655625 (change=22.282256473067278 %)
[2025-11-22 20:17:19] 2025-11-23 01:16:43,206 | INFO     | left removable region: 10
[2025-11-22 20:17:19] 2025-11-23 01:16:43,213 | INFO     | sum of square deviations: 499196753378.0202
[2025-11-22 20:17:19] 2025-11-23 01:16:43,288 | INFO     | sum of deviations: 2198838167204.9028
[2025-11-22 20:17:19] 2025-11-23 01:16:43,288 | INFO     | mean x: 1763824414.890785
[2025-11-22 20:17:19] 2025-11-23 01:16:43,289 | INFO     | mean y: 3138927.046075085
[2025-11-22 20:17:19] 2025-11-23 01:16:43,289 | INFO     | intersect: -7766071143.863172
[2025-11-22 20:17:19] 2025-11-23 01:16:43,291 | INFO     | chi2: 8.010196285144808
[2025-11-22 20:17:19] 2025-11-23 01:16:43,291 | INFO     | current memory leak: 4.40 B/s (using 1172 data points, chi2=8.01)
[2025-11-22 20:17:19] 2025-11-23 01:16:43,299 | INFO     | could have reported an average CPU frequency of 2599 MHz (43 samples)
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | ..............................
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | . Timing measurements:
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | . get job = 0 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | . initial setup = 5 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | . payload setup = 43 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | . stage-in = 0 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | . payload execution = 72482 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,300 | INFO     | . stage-out = 15 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,301 | INFO     | . log creation = 2 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,301 | INFO     | ..............................
[2025-11-22 20:17:19] 2025-11-23 01:16:43,511 | INFO     | 
[2025-11-22 20:17:19] 2025-11-23 01:16:43,511 | INFO     | job summary report
[2025-11-22 20:17:19] 2025-11-23 01:16:43,511 | INFO     | --------------------------------------------------
[2025-11-22 20:17:19] 2025-11-23 01:16:43,511 | INFO     | PanDA job id: 6894285653
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | task id: 47533967
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | errors: (none)
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | pilot state: finished 
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | transexitcode: 0
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | exeerrorcode: 0
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | exeerrordiag: 
[2025-11-22 20:17:19] 2025-11-23 01:16:43,512 | INFO     | exitcode: 0
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | exitmsg: OK
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | cpuconsumptiontime: 303010 s
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | nevents: 1000
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | neventsw: 0
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | pid: 1230638
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | pgrp: 1230638
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | corecount: 9
[2025-11-22 20:17:19] 2025-11-23 01:16:43,513 | INFO     | event service: False
[2025-11-22 20:17:19] 2025-11-23 01:16:43,514 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298863, 13: 2298863, 24: 2298919, 35: 2299365, 46: 2299365, 72527: 2358672, 72528: 2358671, 72544: 2367721, 72547: 2367777, 725
[2025-11-22 20:17:19] 2025-11-23 01:16:43,514 | INFO     | --------------------------------------------------
[2025-11-22 20:17:19] 2025-11-23 01:16:43,514 | INFO     | 
[2025-11-22 20:17:19] 2025-11-23 01:16:43,514 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 20:17:19] 2025-11-23 01:16:43,578 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,578 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,580 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:17:19] 2025-11-23 01:16:43,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,581 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:17:19] 2025-11-23 01:16:43,581 | INFO     | job 6894285653 has completed (purged errors)
[2025-11-22 20:17:19] 2025-11-23 01:16:43,589 | INFO     | overall cleanup function is called
[2025-11-22 20:17:19] 2025-11-23 01:16:44,650 | INFO     | --- collectZombieJob: --- 10, [1230638]
[2025-11-22 20:17:19] 2025-11-23 01:16:44,651 | INFO     | zombie collector waiting for pid 1230638
[2025-11-22 20:17:19] 2025-11-23 01:16:44,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:17:19] 2025-11-23 01:16:44,651 | INFO     | collected zombie processes
[2025-11-22 20:17:19] 2025-11-23 01:16:44,651 | INFO     | will attempt to kill all subprocesses of pid=1230638
[2025-11-22 20:17:19] 2025-11-23 01:16:45,022 | INFO     | process IDs to be killed: [1230638] (in reverse order)
[2025-11-22 20:17:19] 2025-11-23 01:16:45,542 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:17:19] 2025-11-23 01:16:45,542 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:17:19] 2025-11-23 01:16:45,562 | INFO     | did not find any defunct processes belonging to 1230638
[2025-11-22 20:17:19] 2025-11-23 01:16:45,585 | INFO     | did not find any defunct processes belonging to 1230638
[2025-11-22 20:17:19] 2025-11-23 01:16:45,591 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:17:19] 2025-11-23 01:16:45,591 | INFO     | ready for new job
[2025-11-22 20:17:19] 2025-11-23 01:16:45,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:17:19] 2025-11-23 01:16:45,602 | INFO     | ***************************************
[2025-11-22 20:17:19] 2025-11-23 01:16:45,602 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:17:19] 2025-11-23 01:16:45,606 | INFO     | ***************************************
[2025-11-22 20:17:19] 2025-11-23 01:16:45,607 | INFO     | 
[2025-11-22 20:17:19] 2025-11-23 01:16:45,609 | INFO     | architecture information:
[2025-11-22 20:17:19] 2025-11-23 01:16:45,618 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:17:19] 2025-11-23 01:16:45,717 | INFO     | cat /etc/os-release:
[2025-11-22 20:17:19] NAME="CentOS Linux"
[2025-11-22 20:17:19] VERSION="7 (Core)"
[2025-11-22 20:17:19] ID="centos"
[2025-11-22 20:17:19] ID_LIKE="rhel fedora"
[2025-11-22 20:17:19] VERSION_ID="7"
[2025-11-22 20:17:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:17:19] ANSI_COLOR="0;31"
[2025-11-22 20:17:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:17:19] HOME_URL="https://www.centos.org/"
[2025-11-22 20:17:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:17:19] 
[2025-11-22 20:17:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:17:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:17:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:17:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:17:19] 
[2025-11-22 20:17:19] 2025-11-23 01:16:45,717 | INFO     | ***************************************
[2025-11-22 20:17:19] 2025-11-23 01:16:46,221 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 20:17:19] 2025-11-23 01:16:46,374 | INFO     | sufficient remaining disk space (49368006656 B)
[2025-11-22 20:17:19] 2025-11-23 01:16:46,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:17:19] 2025-11-23 01:16:46,375 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:17:19] 2025-11-23 01:16:46,375 | INFO     | update_server=False
[2025-11-22 20:17:19] 2025-11-23 01:16:46,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:17:19] 2025-11-23 01:16:46,483 | INFO     | all data control threads have been joined
[2025-11-22 20:17:19] 2025-11-23 01:16:46,595 | INFO     | all job control threads have been joined
[2025-11-22 20:17:19] 2025-11-23 01:16:46,926 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:17:19] 2025-11-23 01:16:46,927 | INFO     | aborting loop
[2025-11-22 20:17:19] 2025-11-23 01:16:47,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:17:19] 2025-11-23 01:16:47,381 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,438 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,489 | INFO     | [data] control thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,604 | INFO     | [job] control thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,639 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,784 | INFO     | [job] validate thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,840 | INFO     | all payload control threads have been joined
[2025-11-22 20:17:19] 2025-11-23 01:16:47,856 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:47,932 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:48,525 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:17:19] 2025-11-23 01:16:48,558 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:48,644 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:17:19] 2025-11-23 01:16:48,655 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:48,709 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:48,846 | INFO     | [payload] control thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:49,263 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:49,531 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:52,659 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:17:19] 2025-11-23 01:16:53,226 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:17:19] 2025-11-23 01:16:54,222 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672607692608)>', '<ExcThread(monitor, started 139672101566208)>']
[2025-11-22 20:17:19] 2025-11-23 01:16:59,248 | INFO     | all workflow threads have been joined
[2025-11-22 20:17:19] 2025-11-23 01:16:59,249 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:17:19] 2025-11-23 01:16:59,249 | INFO     | traces error code: 0
[2025-11-22 20:17:19] 2025-11-23 01:16:59,249 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:17:19] 2025-11-23 01:17:16,974 | INFO     | PID=1220674 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:17:19] 2025-11-23 01:17:16,974 | INFO     | .. there are 8 such processes running
[2025-11-22 20:17:19] 2025-11-23 01:17:16,975 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:17:19] 2025-11-23 01:17:16,976 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:17:19] 2025-11-23 01:17:16,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:17:19] 2025-11-23 01:17:16,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:17:19] 2025-11-23 01:17:16,976 | INFO     | [monitor] control thread has ended
[2025-11-22 20:17:19] 2025-11-23 01:17:17,206 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:17:19] 2025-11-23 01:17:17,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:17:19] 2025-11-23 01:17:17,378 [wrapper] pilotpid: 1220674
[2025-11-22 20:17:19] 2025-11-23 01:17:17,430 [wrapper] Pilot exit status: 0
[2025-11-22 20:17:19] 2025-11-23 01:17:17,739 [wrapper] pandaids: 6894285653
[2025-11-22 20:17:19] 2025-11-23 01:17:17,870 [wrapper] cleanup supervisor_pilot 2879612 1220675
[2025-11-22 20:17:19] 2025-11-23 01:17:17,924 [wrapper] Test setup, not cleaning
[2025-11-22 20:17:19] 2025-11-23 01:17:17,977 [wrapper] apfmon messages muted
[2025-11-22 20:17:19] 2025-11-23 01:17:18,031 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:17:19] 2025-11-23 01:17:18,195 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:17:19]  *** Error codes and diagnostics ***
[2025-11-22 20:17:19]     "exeErrorCode": 0,
[2025-11-22 20:17:19]     "exeErrorDiag": "",
[2025-11-22 20:17:19]     "pilotErrorCode": 0,
[2025-11-22 20:17:19]     "pilotErrorDiag": "",
[2025-11-22 20:17:19]  *** Listing of results directory ***
[2025-11-22 20:17:19] total 1324700
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:18 pilot3.tar.gz
[2025-11-22 20:17:19] -rwx------. 1 boincer umatlas     36292 Nov 21 05:19 runpilot2-wrapper.sh
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 05:19 queuedata.json
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas       100 Nov 22 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:17:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 00:04 run_atlas
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas       105 Nov 22 00:04 job.xml
[2025-11-22 20:17:19] -rw-r--r--. 2 boincer umatlas 408410420 Nov 22 00:04 EVNT.47493127._002366.pool.root.1
[2025-11-22 20:17:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:04 start_atlas.sh
[2025-11-22 20:17:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 00:04 shared
[2025-11-22 20:17:19] -rw-r--r--. 2 boincer umatlas    590106 Nov 22 00:04 input.tar.gz
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas         0 Nov 22 00:04 boinc_lockfile
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 00:04 pandaJob.out
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas        57 Nov 22 00:04 setup.sh.local
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas    989752 Nov 22 00:05 agis_schedconf.cvmfs.json
[2025-11-22 20:17:19] drwx------. 5 boincer umatlas      4096 Nov 22 00:05 pilot3
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas       533 Nov 22 19:52 boinc_task_state.xml
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas      6663 Nov 22 20:09 init_data.xml
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas 920455000 Nov 22 20:12 HITS.47533967._003376.pool.root.1
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas      1065 Nov 22 20:15 memory_monitor_summary.json
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:15 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas   2423253 Nov 22 20:15 log.47533967._003376.job.log.tgz.1
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas      8650 Nov 22 20:16 heartbeat.json
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas        29 Nov 22 20:17 wrapper_checkpoint.txt
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 20:17 boinc_mmap_file
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas        95 Nov 22 20:17 pilot_heartbeat.json
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas       822 Nov 22 20:17 pilotlog.txt
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas   9429614 Nov 22 20:17 log.47533967._003376.job.log.1
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas       353 Nov 22 20:17 output.list
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:17 runtime_log
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas  11868160 Nov 22 20:17 result.tar.gz
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 20:17 runtime_log.err
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas       664 Nov 22 20:17 n53KDm8Pdg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhWHKDmfstXmn.diag
[2025-11-22 20:17:19] -rw-r--r--. 1 boincer umatlas     21895 Nov 22 20:17 stderr.txt
[2025-11-22 20:17:19] HITS file was successfully produced:
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas 920455000 Nov 22 20:12 shared/HITS.pool.root.1
[2025-11-22 20:17:19]  *** Contents of shared directory: ***
[2025-11-22 20:17:19] total 1309920
[2025-11-22 20:17:19] -rw-r--r--. 2 boincer umatlas 408410420 Nov 22 00:04 ATLAS.root_0
[2025-11-22 20:17:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 00:04 start_atlas.sh
[2025-11-22 20:17:19] -rw-r--r--. 2 boincer umatlas    590106 Nov 22 00:04 input.tar.gz
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas 920455000 Nov 22 20:12 HITS.pool.root.1
[2025-11-22 20:17:19] -rw-------. 1 boincer umatlas  11868160 Nov 22 20:17 result.tar.gz
20:17:20 (1216516): run_atlas exited; CPU time 303687.209571
20:17:20 (1216516): called boinc_finish(0)

</stderr_txt>
]]>

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