Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:02:12 (20688): wrapper (7.7.26015): starting
22:02:12 (20688): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:02:12] Arguments: --nthreads 8
[2025-11-24 22:02:12] Threads: 8
[2025-11-24 22:02:12] Checking for CVMFS
[2025-11-24 22:02:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:02:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:02:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:02:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:02:15] 2.11.2.0 2602 77449 98176 153258 3 85 15105407 25165824 4632 130560 11 23066895 99.878 13747585 2016 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 22:02:15] CVMFS is ok
[2025-11-24 22:02:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:02:15] Checking for apptainer binary...
[2025-11-24 22:02:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:02:15] Running /usr/bin/apptainer --version
[2025-11-24 22:02:15] apptainer version 1.3.2-1.el7
[2025-11-24 22:02:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:02:20] cg-vwn253.simple-grid.lan
[2025-11-24 22:02:20] apptainer works
[2025-11-24 22:02:20] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:02:20] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:02:20] Starting ATLAS job with PandaID=6894285658
[2025-11-24 22:02:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:21:59]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:22:00] 2025-11-25 22:21:11,575 | INFO     | time since job start (90913s) is within the limit (172800.0s)
[2025-11-25 23:22:00] 2025-11-25 22:21:12,410 | INFO     | monitor loop #6107: job 0:6894285658 is in state 'finished'
[2025-11-25 23:22:00] 2025-11-25 22:21:12,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:22:00] 2025-11-25 22:21:13,582 | INFO     | time since job start (90915s) is within the limit (172800.0s)
[2025-11-25 23:22:00] 2025-11-25 22:21:14,922 | INFO     | monitor loop #6108: job 0:6894285658 is in state 'finished'
[2025-11-25 23:22:00] 2025-11-25 22:21:14,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:22:00] 2025-11-25 22:21:15,591 | INFO     | time since job start (90917s) is within the limit (172800.0s)
[2025-11-25 23:22:00] 2025-11-25 22:21:17,436 | INFO     | monitor loop #6109: job 0:6894285658 is in state 'finished'
[2025-11-25 23:22:00] 2025-11-25 22:21:17,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:22:00] 2025-11-25 22:21:17,600 | INFO     | time since job start (90919s) is within the limit (172800.0s)
[2025-11-25 23:22:00] 2025-11-25 22:21:19,613 | INFO     | time since job start (90921s) is within the limit (172800.0s)
[2025-11-25 23:22:00] 2025-11-25 22:21:19,944 | INFO     | monitor loop #6110: job 0:6894285658 is in state 'finished'
[2025-11-25 23:22:00] 2025-11-25 22:21:19,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:22:00] 2025-11-25 22:21:21,621 | INFO     | time since job start (90923s) is within the limit (172800.0s)
[2025-11-25 23:22:00] 2025-11-25 22:21:21,843 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:22:00] 2025-11-25 22:21:21,845 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 23:22:00] 2025-11-25 22:21:21,847 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6894285658/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:22:00] 2025-11-25 22:21:21,848 | INFO     | extracted standard info from prmon json
[2025-11-25 23:22:00] 2025-11-25 22:21:21,848 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:22:00] 2025-11-25 22:21:21,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:22:00] 2025-11-25 22:21:21,900 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:22:00] 2025-11-25 22:21:21,902 | INFO     | sum of square deviations: 1005229816352.1722
[2025-11-25 23:22:00] 2025-11-25 22:21:22,009 | INFO     | sum of deviations: 4038744813174.6133
[2025-11-25 23:22:00] 2025-11-25 22:21:22,009 | INFO     | mean x: 1764064004.735135
[2025-11-25 23:22:00] 2025-11-25 22:21:22,010 | INFO     | mean y: 2831043.197972973
[2025-11-25 23:22:00] 2025-11-25 22:21:22,010 | INFO     | intersect: -7084706784.8045635
[2025-11-25 23:22:00] 2025-11-25 22:21:22,012 | INFO     | chi2: 27.502079305839352
[2025-11-25 23:22:00] 2025-11-25 22:21:22,014 | INFO     | sum of square deviations: 995076657924.5189
[2025-11-25 23:22:00] 2025-11-25 22:21:22,120 | INFO     | sum of deviations: 4532670974640.425
[2025-11-25 23:22:00] 2025-11-25 22:21:22,121 | INFO     | mean x: 1764063852.239322
[2025-11-25 23:22:00] 2025-11-25 22:21:22,121 | INFO     | mean y: 2838460.7891525426
[2025-11-25 23:22:00] 2025-11-25 22:21:22,121 | INFO     | intersect: -8032643988.507811
[2025-11-25 23:22:00] 2025-11-25 22:21:22,123 | INFO     | chi2: 24.251515107894907
[2025-11-25 23:22:00] 2025-11-25 22:21:22,123 | INFO     | current chi2=24.251515107894907 (change=11.81933977353586 %)
[2025-11-25 23:22:00] 2025-11-25 22:21:22,123 | INFO     | right removable region: 1474
[2025-11-25 23:22:00] 2025-11-25 22:21:22,125 | INFO     | sum of square deviations: 995075542844.5194
[2025-11-25 23:22:00] 2025-11-25 22:21:22,340 | INFO     | sum of deviations: 3411327312034.6323
[2025-11-25 23:22:00] 2025-11-25 22:21:22,340 | INFO     | mean x: 1764064157.239322
[2025-11-25 23:22:00] 2025-11-25 22:21:22,340 | INFO     | mean y: 2840465.865084746
[2025-11-25 23:22:00] 2025-11-25 22:21:22,340 | INFO     | intersect: -6044740828.887064
[2025-11-25 23:22:00] 2025-11-25 22:21:22,342 | INFO     | chi2: 22.572893278251662
[2025-11-25 23:22:00] 2025-11-25 22:21:22,342 | INFO     | current chi2=22.572893278251662 (change=17.922957652664124 %)
[2025-11-25 23:22:00] 2025-11-25 22:21:22,342 | INFO     | left removable region: 10
[2025-11-25 23:22:00] 2025-11-25 22:21:22,345 | INFO     | sum of square deviations: 972978644675.4977
[2025-11-25 23:22:00] 2025-11-25 22:21:22,411 | INFO     | sum of deviations: 3446635444490.238
[2025-11-25 23:22:00] 2025-11-25 22:21:22,411 | INFO     | mean x: 1764064126.7486339
[2025-11-25 23:22:00] 2025-11-25 22:21:22,411 | INFO     | mean y: 2858227.7424863386
[2025-11-25 23:22:00] 2025-11-25 22:21:22,412 | INFO     | intersect: -6246082567.4929085
[2025-11-25 23:22:00] 2025-11-25 22:21:22,413 | INFO     | chi2: 14.58791831921976
[2025-11-25 23:22:00] 2025-11-25 22:21:22,414 | INFO     | current memory leak: 3.54 B/s (using 1464 data points, chi2=14.59)
[2025-11-25 23:22:00] 2025-11-25 22:21:22,416 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-25 23:22:00] 2025-11-25 22:21:22,416 | INFO     | ..............................
[2025-11-25 23:22:00] 2025-11-25 22:21:22,416 | INFO     | . Timing measurements:
[2025-11-25 23:22:00] 2025-11-25 22:21:22,416 | INFO     | . get job = 0 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,416 | INFO     | . initial setup = 11 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,417 | INFO     | . payload setup = 166 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,417 | INFO     | . stage-in = 0 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,417 | INFO     | . payload execution = 90438 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,417 | INFO     | . stage-out = 6 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,417 | INFO     | . log creation = 2 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,417 | INFO     | ..............................
[2025-11-25 23:22:00] 2025-11-25 22:21:22,651 | INFO     | 
[2025-11-25 23:22:00] 2025-11-25 22:21:22,652 | INFO     | job summary report
[2025-11-25 23:22:00] 2025-11-25 22:21:22,652 | INFO     | --------------------------------------------------
[2025-11-25 23:22:00] 2025-11-25 22:21:22,652 | INFO     | PanDA job id: 6894285658
[2025-11-25 23:22:00] 2025-11-25 22:21:22,652 | INFO     | task id: 47533967
[2025-11-25 23:22:00] 2025-11-25 22:21:22,652 | INFO     | errors: (none)
[2025-11-25 23:22:00] 2025-11-25 22:21:22,652 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:22:00] 2025-11-25 22:21:22,652 | INFO     | pilot state: finished 
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | transexitcode: 0
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | exeerrorcode: 0
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | exeerrordiag: 
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | exitcode: 0
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | exitmsg: OK
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | cpuconsumptiontime: 339553 s
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | nevents: 1000
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | neventsw: 0
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | pid: 31230
[2025-11-25 23:22:00] 2025-11-25 22:21:22,653 | INFO     | pgrp: 31230
[2025-11-25 23:22:00] 2025-11-25 22:21:22,654 | INFO     | corecount: 8
[2025-11-25 23:22:00] 2025-11-25 22:21:22,654 | INFO     | event service: False
[2025-11-25 23:22:00] 2025-11-25 22:21:22,654 | INFO     | sizes: {0: 2284077, 1: 2284332, 2: 2284360, 12: 2284360, 23: 2284388, 34: 2284416, 45: 2284572, 55: 2284600, 66: 2284628, 77: 2284656, 88: 2284712, 98: 2285020, 10
[2025-11-25 23:22:00] 2025-11-25 22:21:22,654 | INFO     | --------------------------------------------------
[2025-11-25 23:22:00] 2025-11-25 22:21:22,654 | INFO     | 
[2025-11-25 23:22:00] 2025-11-25 22:21:22,654 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-25 23:22:00] 2025-11-25 22:21:23,225 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,225 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | job 6894285658 has completed (purged errors)
[2025-11-25 23:22:00] 2025-11-25 22:21:23,227 | INFO     | overall cleanup function is called
[2025-11-25 23:22:00] 2025-11-25 22:21:24,250 | INFO     | --- collectZombieJob: --- 10, [31230]
[2025-11-25 23:22:00] 2025-11-25 22:21:24,251 | INFO     | zombie collector waiting for pid 31230
[2025-11-25 23:22:00] 2025-11-25 22:21:24,251 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:22:00] 2025-11-25 22:21:24,251 | INFO     | collected zombie processes
[2025-11-25 23:22:00] 2025-11-25 22:21:24,251 | INFO     | will attempt to kill all subprocesses of pid=31230
[2025-11-25 23:22:00] 2025-11-25 22:21:24,396 | INFO     | process IDs to be killed: [31230] (in reverse order)
[2025-11-25 23:22:00] 2025-11-25 22:21:25,193 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:22:00] 2025-11-25 22:21:25,194 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:22:00] 2025-11-25 22:21:25,197 | INFO     | did not find any defunct processes belonging to 31230
[2025-11-25 23:22:00] 2025-11-25 22:21:25,201 | INFO     | did not find any defunct processes belonging to 31230
[2025-11-25 23:22:00] 2025-11-25 22:21:25,257 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:22:00] 2025-11-25 22:21:25,257 | INFO     | ready for new job
[2025-11-25 23:22:00] 2025-11-25 22:21:25,257 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:22:00] 2025-11-25 22:21:25,264 | INFO     | ***************************************
[2025-11-25 23:22:00] 2025-11-25 22:21:25,264 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:22:00] 2025-11-25 22:21:25,264 | INFO     | ***************************************
[2025-11-25 23:22:00] 2025-11-25 22:21:25,264 | INFO     | 
[2025-11-25 23:22:00] 2025-11-25 22:21:25,265 | INFO     | pilot is running in a VM
[2025-11-25 23:22:00] 2025-11-25 22:21:25,265 | INFO     | architecture information:
[2025-11-25 23:22:00] 2025-11-25 22:21:25,275 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:22:00] 2025-11-25 22:21:25,540 | INFO     | cat /etc/os-release:
[2025-11-25 23:22:00] NAME="CentOS Linux"
[2025-11-25 23:22:00] VERSION="7 (Core)"
[2025-11-25 23:22:00] ID="centos"
[2025-11-25 23:22:00] ID_LIKE="rhel fedora"
[2025-11-25 23:22:00] VERSION_ID="7"
[2025-11-25 23:22:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:22:00] ANSI_COLOR="0;31"
[2025-11-25 23:22:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:22:00] HOME_URL="https://www.centos.org/"
[2025-11-25 23:22:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:22:00] 
[2025-11-25 23:22:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:22:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:22:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:22:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:22:00] 
[2025-11-25 23:22:00] 2025-11-25 22:21:25,541 | INFO     | ***************************************
[2025-11-25 23:22:00] 2025-11-25 22:21:26,045 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-25 23:22:00] 2025-11-25 22:21:26,325 | INFO     | sufficient remaining disk space (494777925632 B)
[2025-11-25 23:22:00] 2025-11-25 22:21:26,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:22:00] 2025-11-25 22:21:26,326 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:22:00] 2025-11-25 22:21:26,326 | INFO     | update_server=False
[2025-11-25 23:22:00] 2025-11-25 22:21:26,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:22:00] 2025-11-25 22:21:26,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:22:00] 2025-11-25 22:21:26,333 | INFO     | aborting loop
[2025-11-25 23:22:00] 2025-11-25 22:21:26,808 | INFO     | all payload control threads have been joined
[2025-11-25 23:22:00] 2025-11-25 22:21:26,821 | INFO     | all data control threads have been joined
[2025-11-25 23:22:00] 2025-11-25 22:21:27,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:22:00] 2025-11-25 22:21:27,333 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:27,339 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:27,471 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:27,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:22:00] 2025-11-25 22:21:27,634 | INFO     | [job] validate thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:27,814 | INFO     | [payload] control thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:27,827 | INFO     | [data] control thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:27,856 | INFO     | all job control threads have been joined
[2025-11-25 23:22:00] 2025-11-25 22:21:28,091 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:28,136 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:28,321 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:28,332 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:28,574 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:28,862 | INFO     | [job] control thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:28,867 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:29,052 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:29,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:22:00] 2025-11-25 22:21:33,172 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:35,906 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:22:00] 2025-11-25 22:21:37,007 | INFO     | job.realtimelogging is not enabled
[2025-11-25 23:22:00] 2025-11-25 22:21:38,013 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:22:00] 2025-11-25 22:21:38,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547856938816)>', '<ExcThread(monitor, started 140547259868928)>']
[2025-11-25 23:22:00] 2025-11-25 22:21:43,855 | INFO     | all workflow threads have been joined
[2025-11-25 23:22:00] 2025-11-25 22:21:43,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:22:00] 2025-11-25 22:21:43,856 | INFO     | traces error code: 0
[2025-11-25 23:22:00] 2025-11-25 22:21:43,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:22:00] 2025-11-25 22:21:54,804 | INFO     | PID=24457 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:22:00] 2025-11-25 22:21:54,804 | INFO     | .. there are 9 such processes running
[2025-11-25 23:22:00] 2025-11-25 22:21:54,805 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:22:00] 2025-11-25 22:21:54,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:22:00] 2025-11-25 22:21:54,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:22:00] 2025-11-25 22:21:54,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:22:00] 2025-11-25 22:21:54,805 | INFO     | [monitor] control thread has ended
[2025-11-25 23:22:00] 2025-11-25 22:21:54,930 [wrapper] supervise_pilot (15 min periods counter: 102)
[2025-11-25 23:22:00] 2025-11-25 22:21:55,136 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:22:00] 2025-11-25 22:21:55,199 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:22:00] 2025-11-25 22:21:55,283 [wrapper] pilotpid: 24457
[2025-11-25 23:22:00] 2025-11-25 22:21:55,355 [wrapper] Pilot exit status: 0
[2025-11-25 23:22:00] 2025-11-25 22:21:55,762 [wrapper] pandaids: 6894285658
[2025-11-25 23:22:00] 2025-11-25 22:21:56,492 [wrapper] cleanup supervisor_pilot  7883 24458
[2025-11-25 23:22:00] 2025-11-25 22:21:56,592 [wrapper] Test setup, not cleaning
[2025-11-25 23:22:00] 2025-11-25 22:21:56,697 [wrapper] apfmon messages muted
[2025-11-25 23:22:00] 2025-11-25 22:21:56,825 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:22:00] 2025-11-25 22:21:56,919 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:22:00]  *** Error codes and diagnostics ***
[2025-11-25 23:22:00]     "exeErrorCode": 0,
[2025-11-25 23:22:00]     "exeErrorDiag": "",
[2025-11-25 23:22:00]     "pilotErrorCode": 0,
[2025-11-25 23:22:00]     "pilotErrorDiag": "",
[2025-11-25 23:22:00]  *** Listing of results directory ***
[2025-11-25 23:22:00] total 1337528
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc    576529 Nov 21 10:54 pilot3.tar.gz
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc      5112 Nov 21 11:15 queuedata.json
[2025-11-25 23:22:00] -rwx------. 1 boinc boinc     36292 Nov 21 11:16 runpilot2-wrapper.sh
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:22:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:02 run_atlas
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:02 job.xml
[2025-11-25 23:22:00] -rw-r--r--. 2 boinc boinc 410771570 Nov 24 22:02 EVNT.47493127._002367.pool.root.1
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc      6389 Nov 24 22:02 init_data.xml
[2025-11-25 23:22:00] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:02 start_atlas.sh
[2025-11-25 23:22:00] drwxrwx--x. 2 boinc boinc        68 Nov 24 22:02 shared
[2025-11-25 23:22:00] -rw-r--r--. 2 boinc boinc    590102 Nov 24 22:02 input.tar.gz
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:02 boinc_lockfile
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc      2783 Nov 24 22:02 pandaJob.out
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc    991801 Nov 24 22:05 agis_schedconf.cvmfs.json
[2025-11-25 23:22:00] drwx------. 5 boinc boinc      4096 Nov 24 22:05 pilot3
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc       533 Nov 25 22:53 boinc_task_state.xml
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc 925616305 Nov 25 23:17 HITS.47533967._003381.pool.root.1
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc      1030 Nov 25 23:19 memory_monitor_summary.json
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc   1516240 Nov 25 23:19 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc   2556413 Nov 25 23:19 log.47533967._003381.job.log.tgz.1
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc      8628 Nov 25 23:21 heartbeat.json
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc      8192 Nov 25 23:21 boinc_mmap_file
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc        29 Nov 25 23:21 wrapper_checkpoint.txt
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc        95 Nov 25 23:21 pilot_heartbeat.json
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc       820 Nov 25 23:21 pilotlog.txt
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc  12113219 Nov 25 23:21 log.47533967._003381.job.log.1
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc       353 Nov 25 23:21 output.list
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc       620 Nov 25 23:21 runtime_log
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc  14684160 Nov 25 23:21 result.tar.gz
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc       662 Nov 25 23:21 RvOLDm0Mdg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJHJKDmqosmqm.diag
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc      8817 Nov 25 23:21 runtime_log.err
[2025-11-25 23:22:00] -rw-r--r--. 1 boinc boinc     21379 Nov 25 23:22 stderr.txt
[2025-11-25 23:22:00] HITS file was successfully produced:
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc 925616305 Nov 25 23:17 shared/HITS.pool.root.1
[2025-11-25 23:22:00]  *** Contents of shared directory: ***
[2025-11-25 23:22:00] total 1320008
[2025-11-25 23:22:00] -rw-r--r--. 2 boinc boinc 410771570 Nov 24 22:02 ATLAS.root_0
[2025-11-25 23:22:00] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:02 start_atlas.sh
[2025-11-25 23:22:00] -rw-r--r--. 2 boinc boinc    590102 Nov 24 22:02 input.tar.gz
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc 925616305 Nov 25 23:17 HITS.pool.root.1
[2025-11-25 23:22:00] -rw-------. 1 boinc boinc  14684160 Nov 25 23:21 result.tar.gz
23:22:01 (20688): run_atlas exited; CPU time 340126.359246
23:22:01 (20688): called boinc_finish(0)

</stderr_txt>
]]>

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