Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
18:20:18 (1566973): wrapper (7.7.26015): starting
18:20:18 (1566973): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 18:20:18] Arguments: --nthreads 4
[2025-11-22 18:20:18] Threads: 4
[2025-11-22 18:20:18] Checking for CVMFS
[2025-11-22 18:20:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 18:20:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 18:20:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 18:20:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 18:20:18] 2.13.3.0 7129 8954 52024 153189 0 91 2460710 4096000 2272 130560 3 3353685 99.923 484794 1025 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 18:20:18] CVMFS is ok
[2025-11-22 18:20:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 18:20:18] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 18:20:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 18:20:18] Further information can be found at the LHC@home message board.
[2025-11-22 18:20:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 18:20:18] Checking for apptainer binary...
[2025-11-22 18:20:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 18:20:18] Running /usr/bin/apptainer --version
[2025-11-22 18:20:18] apptainer version 1.4.4
[2025-11-22 18:20:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 18:20:19] T7810-Ubuntu
[2025-11-22 18:20:19] apptainer works
[2025-11-22 18:20:19] Set ATHENA_PROC_NUMBER=4
[2025-11-22 18:20:19] Set ATHENA_CORE_NUMBER=4
[2025-11-22 18:20:19] Starting ATLAS job with PandaID=6893878627
[2025-11-22 18:20:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 13:15:28]  *** The last 200 lines of the pilot log: ***
[2025-11-23 13:15:28] 2025-11-23 18:14:43,211 | INFO     | monitor loop #4924: job 0:6893878627 is in state 'finished'
[2025-11-23 13:15:28] 2025-11-23 18:14:43,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,679 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 13:15:28] 2025-11-23 18:14:44,693 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2795.608212499999
[2025-11-23 13:15:28] 2025-11-23 18:14:44,709 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/16/PanDA_Pilot-6893878627/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,710 | INFO     | extracted standard info from prmon json
[2025-11-23 13:15:28] 2025-11-23 18:14:44,710 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 13:15:28] 2025-11-23 18:14:44,710 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 13:15:28] 2025-11-23 18:14:44,732 | INFO     | fitting pss+swap vs Time
[2025-11-23 13:15:28] 2025-11-23 18:14:44,734 | INFO     | sum of square deviations: 429835891830.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,766 | INFO     | sum of deviations: 1088511172450.0007
[2025-11-23 13:15:28] 2025-11-23 18:14:44,767 | INFO     | mean x: 1763887637.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,767 | INFO     | mean y: 2266940.8376681614
[2025-11-23 13:15:28] 2025-11-23 18:14:44,767 | INFO     | intersect: -4464580607.994515
[2025-11-23 13:15:28] 2025-11-23 18:14:44,769 | INFO     | chi2: 4.474798938600609
[2025-11-23 13:15:28] 2025-11-23 18:14:44,770 | INFO     | sum of square deviations: 424079235057.5
[2025-11-23 13:15:28] 2025-11-23 18:14:44,788 | INFO     | time since job start (68052s) is within the limit (172800.0s)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,804 | INFO     | sum of deviations: 1299436862711.0005
[2025-11-23 13:15:28] 2025-11-23 18:14:44,804 | INFO     | mean x: 1763887484.5
[2025-11-23 13:15:28] 2025-11-23 18:14:44,804 | INFO     | mean y: 2272525.897297297
[2025-11-23 13:15:28] 2025-11-23 18:14:44,804 | INFO     | intersect: -5402520327.785112
[2025-11-23 13:15:28] 2025-11-23 18:14:44,806 | INFO     | chi2: 2.7477909257518487
[2025-11-23 13:15:28] 2025-11-23 18:14:44,806 | INFO     | current chi2=2.7477909257518487 (change=38.594091858545994 %)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,807 | INFO     | sum of square deviations: 418374207160.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,840 | INFO     | sum of deviations: 1347050728081.0007
[2025-11-23 13:15:28] 2025-11-23 18:14:44,840 | INFO     | mean x: 1763887332.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,840 | INFO     | mean y: 2273795.8497737558
[2025-11-23 13:15:28] 2025-11-23 18:14:44,841 | INFO     | intersect: -5676961860.077687
[2025-11-23 13:15:28] 2025-11-23 18:14:44,842 | INFO     | chi2: 2.549391018499931
[2025-11-23 13:15:28] 2025-11-23 18:14:44,842 | INFO     | current chi2=2.549391018499931 (change=7.220342180787709 %)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,842 | INFO     | right removable region: 1104
[2025-11-23 13:15:28] 2025-11-23 18:14:44,844 | INFO     | sum of square deviations: 424079235057.5
[2025-11-23 13:15:28] 2025-11-23 18:14:44,877 | INFO     | sum of deviations: 831022642671.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,877 | INFO     | mean x: 1763887789.5
[2025-11-23 13:15:28] 2025-11-23 18:14:44,877 | INFO     | mean y: 2273756.6504504504
[2025-11-23 13:15:28] 2025-11-23 18:14:44,878 | INFO     | intersect: -3454228168.058619
[2025-11-23 13:15:28] 2025-11-23 18:14:44,879 | INFO     | chi2: 2.083098528582347
[2025-11-23 13:15:28] 2025-11-23 18:14:44,879 | INFO     | current chi2=2.083098528582347 (change=53.44822064265108 %)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,881 | INFO     | sum of square deviations: 418374207160.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,913 | INFO     | sum of deviations: 787603682397.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,914 | INFO     | mean x: 1763887942.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,914 | INFO     | mean y: 2274916.975565611
[2025-11-23 13:15:28] 2025-11-23 18:14:44,914 | INFO     | intersect: -3318304159.5533404
[2025-11-23 13:15:28] 2025-11-23 18:14:44,915 | INFO     | chi2: 2.0477079154240507
[2025-11-23 13:15:28] 2025-11-23 18:14:44,916 | INFO     | current chi2=2.0477079154240507 (change=1.6989409129092543 %)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,916 | INFO     | left removable region: 20
[2025-11-23 13:15:28] 2025-11-23 18:14:44,917 | INFO     | sum of square deviations: 394971628835.0
[2025-11-23 13:15:28] 2025-11-23 18:14:44,948 | INFO     | sum of deviations: 990813039706.5
[2025-11-23 13:15:28] 2025-11-23 18:14:44,949 | INFO     | mean x: 1763887911.5
[2025-11-23 13:15:28] 2025-11-23 18:14:44,949 | INFO     | mean y: 2283344.8920664205
[2025-11-23 13:15:28] 2025-11-23 18:14:44,949 | INFO     | intersect: -4422548758.744831
[2025-11-23 13:15:28] 2025-11-23 18:14:44,950 | INFO     | chi2: 0.10292687164827703
[2025-11-23 13:15:28] 2025-11-23 18:14:44,951 | INFO     | current memory leak: 2.51 B/s (using 1084 data points, chi2=0.10)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,952 | INFO     | could have reported an average CPU frequency of 2716 MHz (41 samples)
[2025-11-23 13:15:28] 2025-11-23 18:14:44,952 | INFO     | ..............................
[2025-11-23 13:15:28] 2025-11-23 18:14:44,952 | INFO     | . Timing measurements:
[2025-11-23 13:15:28] 2025-11-23 18:14:44,952 | INFO     | . get job = 0 s
[2025-11-23 13:15:28] 2025-11-23 18:14:44,952 | INFO     | . initial setup = 3 s
[2025-11-23 13:15:28] 2025-11-23 18:14:44,952 | INFO     | . payload setup = 7 s
[2025-11-23 13:15:28] 2025-11-23 18:14:44,953 | INFO     | . stage-in = 0 s
[2025-11-23 13:15:28] 2025-11-23 18:14:44,953 | INFO     | . payload execution = 68009 s
[2025-11-23 13:15:28] 2025-11-23 18:14:44,953 | INFO     | . stage-out = 4 s
[2025-11-23 13:15:28] 2025-11-23 18:14:44,953 | INFO     | . log creation = 0 s
[2025-11-23 13:15:28] 2025-11-23 18:14:44,953 | INFO     | ..............................
[2025-11-23 13:15:28] 2025-11-23 18:14:45,069 | INFO     | 
[2025-11-23 13:15:28] 2025-11-23 18:14:45,070 | INFO     | job summary report
[2025-11-23 13:15:28] 2025-11-23 18:14:45,070 | INFO     | --------------------------------------------------
[2025-11-23 13:15:28] 2025-11-23 18:14:45,070 | INFO     | PanDA job id: 6893878627
[2025-11-23 13:15:28] 2025-11-23 18:14:45,070 | INFO     | task id: 47523449
[2025-11-23 13:15:28] 2025-11-23 18:14:45,070 | INFO     | errors: (none)
[2025-11-23 13:15:28] 2025-11-23 18:14:45,070 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 13:15:28] 2025-11-23 18:14:45,070 | INFO     | pilot state: finished 
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | transexitcode: 0
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | exeerrorcode: 0
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | exeerrordiag: 
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | exitcode: 0
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | exitmsg: OK
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | cpuconsumptiontime: 270947 s
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | nevents: 1000
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | neventsw: 0
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | pid: 1577989
[2025-11-23 13:15:28] 2025-11-23 18:14:45,071 | INFO     | pgrp: 1577989
[2025-11-23 13:15:28] 2025-11-23 18:14:45,072 | INFO     | corecount: 4
[2025-11-23 13:15:28] 2025-11-23 18:14:45,072 | INFO     | event service: False
[2025-11-23 13:15:28] 2025-11-23 18:14:45,072 | INFO     | sizes: {0: 2298770, 5: 2299032, 11: 2299088, 68020: 2355111, 68026: 2364135, 68028: 2364191, 68036: 2364661}
[2025-11-23 13:15:28] 2025-11-23 18:14:45,072 | INFO     | --------------------------------------------------
[2025-11-23 13:15:28] 2025-11-23 18:14:45,072 | INFO     | 
[2025-11-23 13:15:28] 2025-11-23 18:14:45,072 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/16
[2025-11-23 13:15:28] 2025-11-23 18:14:45,097 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,097 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,099 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 13:15:28] 2025-11-23 18:14:45,100 | INFO     | job 6893878627 has completed (purged errors)
[2025-11-23 13:15:28] 2025-11-23 18:14:45,100 | INFO     | overall cleanup function is called
[2025-11-23 13:15:28] 2025-11-23 18:14:46,116 | INFO     | --- collectZombieJob: --- 10, [1577989]
[2025-11-23 13:15:28] 2025-11-23 18:14:46,117 | INFO     | zombie collector waiting for pid 1577989
[2025-11-23 13:15:28] 2025-11-23 18:14:46,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 13:15:28] 2025-11-23 18:14:46,117 | INFO     | collected zombie processes
[2025-11-23 13:15:28] 2025-11-23 18:14:46,117 | INFO     | will attempt to kill all subprocesses of pid=1577989
[2025-11-23 13:15:28] 2025-11-23 18:14:46,435 | INFO     | process IDs to be killed: [1577989] (in reverse order)
[2025-11-23 13:15:28] 2025-11-23 18:14:46,524 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 13:15:28] 2025-11-23 18:14:46,525 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 13:15:28] 2025-11-23 18:14:46,534 | INFO     | did not find any defunct processes belonging to 1577989
[2025-11-23 13:15:28] 2025-11-23 18:14:46,543 | INFO     | did not find any defunct processes belonging to 1577989
[2025-11-23 13:15:28] 2025-11-23 18:14:46,544 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 13:15:28] 2025-11-23 18:14:46,544 | INFO     | ready for new job
[2025-11-23 13:15:28] 2025-11-23 18:14:46,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 13:15:28] 2025-11-23 18:14:46,550 | INFO     | ***************************************
[2025-11-23 13:15:28] 2025-11-23 18:14:46,551 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 13:15:28] 2025-11-23 18:14:46,551 | INFO     | ***************************************
[2025-11-23 13:15:28] 2025-11-23 18:14:46,551 | INFO     | 
[2025-11-23 13:15:28] 2025-11-23 18:14:46,555 | INFO     | architecture information:
[2025-11-23 13:15:28] 2025-11-23 18:14:46,556 | INFO     | executing command: cat /etc/os-release
[2025-11-23 13:15:28] 2025-11-23 18:14:46,576 | INFO     | cat /etc/os-release:
[2025-11-23 13:15:28] NAME="CentOS Linux"
[2025-11-23 13:15:28] VERSION="7 (Core)"
[2025-11-23 13:15:28] ID="centos"
[2025-11-23 13:15:28] ID_LIKE="rhel fedora"
[2025-11-23 13:15:28] VERSION_ID="7"
[2025-11-23 13:15:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 13:15:28] ANSI_COLOR="0;31"
[2025-11-23 13:15:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 13:15:28] HOME_URL="https://www.centos.org/"
[2025-11-23 13:15:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 13:15:28] 
[2025-11-23 13:15:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 13:15:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 13:15:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 13:15:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 13:15:28] 
[2025-11-23 13:15:28] 2025-11-23 18:14:46,577 | INFO     | ***************************************
[2025-11-23 13:15:28] 2025-11-23 18:14:47,079 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/16
[2025-11-23 13:15:28] 2025-11-23 18:14:47,101 | INFO     | sufficient remaining disk space (287198674944 B)
[2025-11-23 13:15:28] 2025-11-23 18:14:47,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 13:15:28] 2025-11-23 18:14:47,101 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 13:15:28] 2025-11-23 18:14:47,101 | INFO     | update_server=False
[2025-11-23 13:15:28] 2025-11-23 18:14:47,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 13:15:28] 2025-11-23 18:14:47,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:15:28] 2025-11-23 18:14:47,102 | INFO     | aborting loop
[2025-11-23 13:15:28] 2025-11-23 18:14:47,280 | INFO     | all payload control threads have been joined
[2025-11-23 13:15:28] 2025-11-23 18:14:47,468 | INFO     | all data control threads have been joined
[2025-11-23 13:15:28] 2025-11-23 18:14:47,785 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 13:15:28] 2025-11-23 18:14:47,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 13:15:28] 2025-11-23 18:14:48,107 | INFO     | [job] retrieve thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:48,108 | INFO     | [job] job monitor thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:48,207 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:48,221 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:48,288 | INFO     | [payload] control thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:48,372 | INFO     | [job] validate thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:48,474 | INFO     | [data] control thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:48,544 | INFO     | all job control threads have been joined
[2025-11-23 13:15:28] 2025-11-23 18:14:48,718 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:49,211 | INFO     | [data] copytool_in thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:49,314 | INFO     | [payload] validate_post thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:49,486 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:49,528 | INFO     | [payload] failed_post thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:49,549 | INFO     | [job] control thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:49,791 | INFO     | [data] copytool_out thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:50,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:15:28] 2025-11-23 18:14:51,089 | INFO     | [job] queue monitor thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:14:51,815 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 13:15:28] 2025-11-23 18:15:18,236 | INFO     | PID=1571008 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 13:15:28] 2025-11-23 18:15:18,237 | INFO     | .. there are 3 such processes running
[2025-11-23 13:15:28] 2025-11-23 18:15:18,238 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 13:15:28] 2025-11-23 18:15:18,238 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 13:15:28] 2025-11-23 18:15:18,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 13:15:28] 2025-11-23 18:15:22,532 | INFO     | [monitor] cgroup control has ended
[2025-11-23 13:15:28] 2025-11-23 18:15:23,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031970801472)>', '<ExcThread(monitor, started 140031486318336)>']
[2025-11-23 13:15:28] 2025-11-23 18:15:23,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 13:15:28] 2025-11-23 18:15:23,262 | INFO     | [monitor] control thread has ended
[2025-11-23 13:15:28] 2025-11-23 18:15:28,268 | INFO     | all workflow threads have been joined
[2025-11-23 13:15:28] 2025-11-23 18:15:28,269 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 13:15:28] 2025-11-23 18:15:28,269 | INFO     | traces error code: 0
[2025-11-23 13:15:28] 2025-11-23 18:15:28,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 13:15:28] 2025-11-23 18:15:28,442 [wrapper] ==== pilot stdout END ====
[2025-11-23 13:15:28] 2025-11-23 18:15:28,445 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 13:15:28] 2025-11-23 18:15:28,449 [wrapper] pilotpid: 1571008
[2025-11-23 13:15:28] 2025-11-23 18:15:28,452 [wrapper] Pilot exit status: 0
[2025-11-23 13:15:28] 2025-11-23 18:15:28,479 [wrapper] pandaids: 6893878627
[2025-11-23 13:15:28] 2025-11-23 18:15:28,541 [wrapper] cleanup supervisor_pilot 1957908 1571009
[2025-11-23 13:15:28] 2025-11-23 18:15:28,545 [wrapper] Test setup, not cleaning
[2025-11-23 13:15:28] 2025-11-23 18:15:28,548 [wrapper] apfmon messages muted
[2025-11-23 13:15:28] 2025-11-23 18:15:28,551 [wrapper] ==== wrapper stdout END ====
[2025-11-23 13:15:28] 2025-11-23 18:15:28,556 [wrapper] ==== wrapper stderr END ====
[2025-11-23 13:15:28]  *** Error codes and diagnostics ***
[2025-11-23 13:15:28]     "exeErrorCode": 0,
[2025-11-23 13:15:28]     "exeErrorDiag": "",
[2025-11-23 13:15:28]     "pilotErrorCode": 0,
[2025-11-23 13:15:28]     "pilotErrorDiag": "",
[2025-11-23 13:15:28]  *** Listing of results directory ***
[2025-11-23 13:15:28] total 1319076
[2025-11-23 13:15:28] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 20 13:04 pilot3.tar.gz
[2025-11-23 13:15:28] -rwx------ 1 whitlerd whitlerd     36292 Nov 20 13:54 runpilot2-wrapper.sh
[2025-11-23 13:15:28] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 20 13:54 queuedata.json
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 22 18:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 13:15:28] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 22 18:20 run_atlas
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 22 18:20 job.xml
[2025-11-23 13:15:28] -rw-r--r-- 2 whitlerd whitlerd 412029579 Nov 22 18:20 EVNT.47493127._000808.pool.root.1
[2025-11-23 13:15:28] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 18:20 start_atlas.sh
[2025-11-23 13:15:28] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 22 18:20 shared
[2025-11-23 13:15:28] -rw-r--r-- 2 whitlerd whitlerd    590102 Nov 22 18:20 input.tar.gz
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd      9104 Nov 22 18:20 init_data.xml
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 18:20 boinc_setup_complete
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 22 18:20 boinc_lockfile
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd      2784 Nov 22 18:20 pandaJob.out
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd    989784 Nov 22 18:20 agis_schedconf.cvmfs.json
[2025-11-23 13:15:28] drwx------ 5 whitlerd whitlerd      4096 Nov 22 18:20 pilot3
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd       532 Nov 23 13:06 boinc_task_state.xml
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd 911855620 Nov 23 13:13 HITS.47523449._008080.pool.root.1
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd      1048 Nov 23 13:14 memory_monitor_summary.json
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd   1526164 Nov 23 13:14 agis_ddmendpoints.agis.ALL.json
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd   1831465 Nov 23 13:14 log.47523449._008080.job.log.tgz.1
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd      8643 Nov 23 13:14 heartbeat.json
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd        95 Nov 23 13:15 pilot_heartbeat.json
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 23 13:15 wrapper_checkpoint.txt
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 23 13:15 boinc_mmap_file
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd      4839 Nov 23 13:15 pilotlog.txt
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd   9622537 Nov 23 13:15 log.47523449._008080.job.log.1
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd       353 Nov 23 13:15 output.list
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 23 13:15 runtime_log
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd  11479040 Nov 23 13:15 result.tar.gz
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd      9037 Nov 23 13:15 runtime_log.err
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd       662 Nov 23 13:15 8WVLDm0yOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYyGKDmGtMFjn.diag
[2025-11-23 13:15:28] -rw-rw-r-- 1 whitlerd whitlerd     21370 Nov 23 13:15 stderr.txt
[2025-11-23 13:15:28] HITS file was successfully produced:
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd 911855620 Nov 23 13:13 shared/HITS.pool.root.1
[2025-11-23 13:15:28]  *** Contents of shared directory: ***
[2025-11-23 13:15:28] total 1304680
[2025-11-23 13:15:28] -rw-r--r-- 2 whitlerd whitlerd 412029579 Nov 22 18:20 ATLAS.root_0
[2025-11-23 13:15:28] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 22 18:20 start_atlas.sh
[2025-11-23 13:15:28] -rw-r--r-- 2 whitlerd whitlerd    590102 Nov 22 18:20 input.tar.gz
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd 911855620 Nov 23 13:13 HITS.pool.root.1
[2025-11-23 13:15:28] -rw------- 1 whitlerd whitlerd  11479040 Nov 23 13:15 result.tar.gz
13:15:30 (1566973): run_atlas exited; CPU time 273214.964890
13:15:30 (1566973): called boinc_finish(0)

</stderr_txt>
]]>

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