Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:51:50 (1080): wrapper (7.7.26015): starting
02:51:50 (1080): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:51:50] Arguments: --nthreads 8
[2025-11-25 02:51:50] Threads: 8
[2025-11-25 02:51:50] Checking for CVMFS
[2025-11-25 02:51:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:51:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:51:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:51:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:51:51] 2.11.2.0 24289 283126 140816 153265 2 230 16123695 25165824 4573 130560 11 139553100 99.884 72170728 2930 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:51:51] CVMFS is ok
[2025-11-25 02:51:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:51:51] Checking for apptainer binary...
[2025-11-25 02:51:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:51:51] Running /usr/bin/apptainer --version
[2025-11-25 02:51:51] apptainer version 1.3.2-1.el7
[2025-11-25 02:51:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:51:52] cg-vwn388.simple-grid.lan
[2025-11-25 02:51:52] apptainer works
[2025-11-25 02:51:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:51:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:51:52] Starting ATLAS job with PandaID=6894285316
[2025-11-25 02:51:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:55:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:55:23] 2025-11-26 02:54:35,845 | INFO     | time since job start (90080s) is within the limit (172800.0s)
[2025-11-26 03:55:23] 2025-11-26 02:54:37,852 | INFO     | time since job start (90082s) is within the limit (172800.0s)
[2025-11-26 03:55:23] 2025-11-26 02:54:38,284 | INFO     | monitor loop #5992: job 0:6894285316 is in state 'finished'
[2025-11-26 03:55:23] 2025-11-26 02:54:38,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:23] 2025-11-26 02:54:39,858 | INFO     | time since job start (90084s) is within the limit (172800.0s)
[2025-11-26 03:55:23] 2025-11-26 02:54:40,789 | INFO     | monitor loop #5993: job 0:6894285316 is in state 'finished'
[2025-11-26 03:55:23] 2025-11-26 02:54:40,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:23] 2025-11-26 02:54:41,161 | INFO     | PID=4926 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 03:55:23] 2025-11-26 02:54:41,162 | INFO     | .. there are 9 such processes running
[2025-11-26 03:55:23] 2025-11-26 02:54:42,163 | INFO     | time since job start (90087s) is within the limit (172800.0s)
[2025-11-26 03:55:23] 2025-11-26 02:54:43,307 | INFO     | monitor loop #5994: job 0:6894285316 is in state 'finished'
[2025-11-26 03:55:23] 2025-11-26 02:54:43,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:23] 2025-11-26 02:54:44,170 | INFO     | time since job start (90089s) is within the limit (172800.0s)
[2025-11-26 03:55:23] 2025-11-26 02:54:45,820 | INFO     | monitor loop #5995: job 0:6894285316 is in state 'finished'
[2025-11-26 03:55:23] 2025-11-26 02:54:45,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:55:23] 2025-11-26 02:54:46,177 | INFO     | time since job start (90091s) is within the limit (172800.0s)
[2025-11-26 03:55:23] 2025-11-26 02:54:46,903 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 03:55:23] 2025-11-26 02:54:46,904 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 03:55:23] 2025-11-26 02:54:46,906 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6894285316/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:55:23] 2025-11-26 02:54:46,907 | INFO     | extracted standard info from prmon json
[2025-11-26 03:55:23] 2025-11-26 02:54:46,907 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:55:23] 2025-11-26 02:54:46,907 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:55:23] 2025-11-26 02:54:46,939 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:55:23] 2025-11-26 02:54:46,942 | INFO     | sum of square deviations: 995073825571.8068
[2025-11-26 03:55:23] 2025-11-26 02:54:47,042 | INFO     | sum of deviations: 2755220316073.584
[2025-11-26 03:55:23] 2025-11-26 02:54:47,042 | INFO     | mean x: 1764080610.2901695
[2025-11-26 03:55:23] 2025-11-26 02:54:47,043 | INFO     | mean y: 2856037.4542372883
[2025-11-26 03:55:23] 2025-11-26 02:54:47,043 | INFO     | intersect: -4881636561.745603
[2025-11-26 03:55:23] 2025-11-26 02:54:47,045 | INFO     | chi2: 12.909954490456476
[2025-11-26 03:55:23] 2025-11-26 02:54:47,047 | INFO     | sum of square deviations: 984989295955.9564
[2025-11-26 03:55:23] 2025-11-26 02:54:47,137 | INFO     | sum of deviations: 3248192049824.4556
[2025-11-26 03:55:23] 2025-11-26 02:54:47,137 | INFO     | mean x: 1764080457.7945578
[2025-11-26 03:55:23] 2025-11-26 02:54:47,137 | INFO     | mean y: 2863490.882312925
[2025-11-26 03:55:23] 2025-11-26 02:54:47,137 | INFO     | intersect: -5814531826.797553
[2025-11-26 03:55:23] 2025-11-26 02:54:47,139 | INFO     | chi2: 9.686863963323699
[2025-11-26 03:55:23] 2025-11-26 02:54:47,140 | INFO     | current chi2=9.686863963323699 (change=24.965932525288196 %)
[2025-11-26 03:55:23] 2025-11-26 02:54:47,140 | INFO     | right removable region: 1469
[2025-11-26 03:55:23] 2025-11-26 02:54:47,142 | INFO     | sum of square deviations: 984988135125.9568
[2025-11-26 03:55:23] 2025-11-26 02:54:47,222 | INFO     | sum of deviations: 2302485373604.449
[2025-11-26 03:55:23] 2025-11-26 02:54:47,222 | INFO     | mean x: 1764080762.7945578
[2025-11-26 03:55:23] 2025-11-26 02:54:47,223 | INFO     | mean y: 2862879.431972789
[2025-11-26 03:55:23] 2025-11-26 02:54:47,223 | INFO     | intersect: -4120811314.544023
[2025-11-26 03:55:23] 2025-11-26 02:54:47,225 | INFO     | chi2: 10.345702122522223
[2025-11-26 03:55:23] 2025-11-26 02:54:47,225 | INFO     | current chi2=10.345702122522223 (change=19.862598042695232 %)
[2025-11-26 03:55:23] 2025-11-26 02:54:47,225 | INFO     | left removable region: 10
[2025-11-26 03:55:23] 2025-11-26 02:54:47,227 | INFO     | sum of square deviations: 963041891682.5106
[2025-11-26 03:55:23] 2025-11-26 02:54:47,298 | INFO     | sum of deviations: 2802110708929.942
[2025-11-26 03:55:23] 2025-11-26 02:54:47,298 | INFO     | mean x: 1764080732.3002057
[2025-11-26 03:55:23] 2025-11-26 02:54:47,298 | INFO     | mean y: 2873605.543522961
[2025-11-26 03:55:23] 2025-11-26 02:54:47,299 | INFO     | intersect: -5129976329.737388
[2025-11-26 03:55:23] 2025-11-26 02:54:47,300 | INFO     | chi2: 6.285369685878123
[2025-11-26 03:55:23] 2025-11-26 02:54:47,301 | INFO     | current memory leak: 2.91 B/s (using 1459 data points, chi2=6.29)
[2025-11-26 03:55:23] 2025-11-26 02:54:47,302 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 03:55:23] 2025-11-26 02:54:47,303 | INFO     | ..............................
[2025-11-26 03:55:23] 2025-11-26 02:54:47,303 | INFO     | . Timing measurements:
[2025-11-26 03:55:23] 2025-11-26 02:54:47,303 | INFO     | . get job = 0 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,303 | INFO     | . initial setup = 2 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,303 | INFO     | . payload setup = 13 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,303 | INFO     | . stage-in = 0 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,303 | INFO     | . payload execution = 89952 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,304 | INFO     | . stage-out = 4 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,304 | INFO     | . log creation = 1 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,304 | INFO     | ..............................
[2025-11-26 03:55:23] 2025-11-26 02:54:47,434 | INFO     | 
[2025-11-26 03:55:23] 2025-11-26 02:54:47,434 | INFO     | job summary report
[2025-11-26 03:55:23] 2025-11-26 02:54:47,434 | INFO     | --------------------------------------------------
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | PanDA job id: 6894285316
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | task id: 47533967
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | errors: (none)
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | pilot state: finished 
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | transexitcode: 0
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | exeerrorcode: 0
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | exeerrordiag: 
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | exitcode: 0
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | exitmsg: OK
[2025-11-26 03:55:23] 2025-11-26 02:54:47,435 | INFO     | cpuconsumptiontime: 339411 s
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | nevents: 1000
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | neventsw: 0
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | pid: 11451
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | pgrp: 11451
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | corecount: 8
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | event service: False
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | sizes: {0: 2284134, 1: 2284333, 2: 2284333, 12: 2284651, 89966: 2346809, 89971: 2355994, 90070: 2356184}
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | --------------------------------------------------
[2025-11-26 03:55:23] 2025-11-26 02:54:47,436 | INFO     | 
[2025-11-26 03:55:23] 2025-11-26 02:54:47,437 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-26 03:55:23] 2025-11-26 02:54:47,920 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,921 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,921 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,921 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:55:23] 2025-11-26 02:54:47,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:55:23] 2025-11-26 02:54:47,924 | INFO     | job 6894285316 has completed (purged errors)
[2025-11-26 03:55:23] 2025-11-26 02:54:47,924 | INFO     | overall cleanup function is called
[2025-11-26 03:55:23] 2025-11-26 02:54:48,945 | INFO     | --- collectZombieJob: --- 10, [11451]
[2025-11-26 03:55:23] 2025-11-26 02:54:48,945 | INFO     | zombie collector waiting for pid 11451
[2025-11-26 03:55:23] 2025-11-26 02:54:48,945 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:55:23] 2025-11-26 02:54:48,946 | INFO     | collected zombie processes
[2025-11-26 03:55:23] 2025-11-26 02:54:48,946 | INFO     | will attempt to kill all subprocesses of pid=11451
[2025-11-26 03:55:23] 2025-11-26 02:54:49,082 | INFO     | process IDs to be killed: [11451] (in reverse order)
[2025-11-26 03:55:23] 2025-11-26 02:54:49,913 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:55:23] 2025-11-26 02:54:49,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:55:23] 2025-11-26 02:54:49,916 | INFO     | did not find any defunct processes belonging to 11451
[2025-11-26 03:55:23] 2025-11-26 02:54:49,919 | INFO     | did not find any defunct processes belonging to 11451
[2025-11-26 03:55:23] 2025-11-26 02:54:49,959 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:55:23] 2025-11-26 02:54:49,960 | INFO     | ready for new job
[2025-11-26 03:55:23] 2025-11-26 02:54:49,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:55:23] 2025-11-26 02:54:49,965 | INFO     | ***************************************
[2025-11-26 03:55:23] 2025-11-26 02:54:49,966 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:55:23] 2025-11-26 02:54:49,966 | INFO     | ***************************************
[2025-11-26 03:55:23] 2025-11-26 02:54:49,966 | INFO     | 
[2025-11-26 03:55:23] 2025-11-26 02:54:49,966 | INFO     | pilot is running in a VM
[2025-11-26 03:55:23] 2025-11-26 02:54:49,966 | INFO     | architecture information:
[2025-11-26 03:55:23] 2025-11-26 02:54:49,976 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:55:23] 2025-11-26 02:54:50,102 | INFO     | cat /etc/os-release:
[2025-11-26 03:55:23] NAME="CentOS Linux"
[2025-11-26 03:55:23] VERSION="7 (Core)"
[2025-11-26 03:55:23] ID="centos"
[2025-11-26 03:55:23] ID_LIKE="rhel fedora"
[2025-11-26 03:55:23] VERSION_ID="7"
[2025-11-26 03:55:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:55:23] ANSI_COLOR="0;31"
[2025-11-26 03:55:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:55:23] HOME_URL="https://www.centos.org/"
[2025-11-26 03:55:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:55:23] 
[2025-11-26 03:55:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:55:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:55:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:55:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:55:23] 
[2025-11-26 03:55:23] 2025-11-26 02:54:50,103 | INFO     | ***************************************
[2025-11-26 03:55:23] 2025-11-26 02:54:50,606 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-26 03:55:23] 2025-11-26 02:54:50,849 | INFO     | sufficient remaining disk space (495472082944 B)
[2025-11-26 03:55:23] 2025-11-26 02:54:50,850 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:55:23] 2025-11-26 02:54:50,850 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:55:23] 2025-11-26 02:54:50,850 | INFO     | update_server=False
[2025-11-26 03:55:23] 2025-11-26 02:54:50,850 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:55:23] 2025-11-26 02:54:51,157 | INFO     | all payload control threads have been joined
[2025-11-26 03:55:23] 2025-11-26 02:54:51,314 | INFO     | all data control threads have been joined
[2025-11-26 03:55:23] 2025-11-26 02:54:51,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:55:23] 2025-11-26 02:54:51,687 | INFO     | all job control threads have been joined
[2025-11-26 03:55:23] 2025-11-26 02:54:51,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:55:23] 2025-11-26 02:54:51,841 | INFO     | aborting loop
[2025-11-26 03:55:23] 2025-11-26 02:54:51,856 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:51,927 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:51,971 | INFO     | [job] validate thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,021 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:55:23] 2025-11-26 02:54:52,086 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,163 | INFO     | [payload] control thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,319 | INFO     | [data] control thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:55:23] 2025-11-26 02:54:52,489 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,575 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,628 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,692 | INFO     | [job] control thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,847 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:52,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:53,315 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:53,455 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:53,487 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:53,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:55:23] 2025-11-26 02:54:57,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:55:23] 2025-11-26 02:54:59,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140029525346112)>', '<ExcThread(monitor, started 140029298358016)>']
[2025-11-26 03:55:23] 2025-11-26 02:55:04,745 | INFO     | all workflow threads have been joined
[2025-11-26 03:55:23] 2025-11-26 02:55:04,745 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:55:23] 2025-11-26 02:55:04,745 | INFO     | traces error code: 0
[2025-11-26 03:55:23] 2025-11-26 02:55:04,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:55:23] 2025-11-26 02:55:19,357 | INFO     | PID=4926 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 03:55:23] 2025-11-26 02:55:19,358 | INFO     | .. there are 9 such processes running
[2025-11-26 03:55:23] 2025-11-26 02:55:19,359 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:55:23] 2025-11-26 02:55:19,359 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:55:23] 2025-11-26 02:55:19,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:55:23] 2025-11-26 02:55:19,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:55:23] 2025-11-26 02:55:19,359 | INFO     | [monitor] control thread has ended
[2025-11-26 03:55:23] 2025-11-26 02:55:19,619 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:55:23] 2025-11-26 02:55:19,714 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:55:23] 2025-11-26 02:55:19,814 [wrapper] pilotpid: 4926
[2025-11-26 03:55:23] 2025-11-26 02:55:19,865 [wrapper] Pilot exit status: 0
[2025-11-26 03:55:23] 2025-11-26 02:55:20,217 [wrapper] pandaids: 6894285316
[2025-11-26 03:55:23] 2025-11-26 02:55:21,207 [wrapper] cleanup supervisor_pilot 25551 4927
[2025-11-26 03:55:23] 2025-11-26 02:55:21,331 [wrapper] Test setup, not cleaning
[2025-11-26 03:55:23] 2025-11-26 02:55:21,367 [wrapper] apfmon messages muted
[2025-11-26 03:55:23] 2025-11-26 02:55:21,385 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:55:23] 2025-11-26 02:55:21,410 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:55:23]  *** Error codes and diagnostics ***
[2025-11-26 03:55:23]     "exeErrorCode": 0,
[2025-11-26 03:55:23]     "exeErrorDiag": "",
[2025-11-26 03:55:23]     "pilotErrorCode": 0,
[2025-11-26 03:55:23]     "pilotErrorDiag": "",
[2025-11-26 03:55:23]  *** Listing of results directory ***
[2025-11-26 03:55:23] total 1328000
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc    576529 Nov 21 10:27 pilot3.tar.gz
[2025-11-26 03:55:23] -rwx------. 1 boinc boinc     36292 Nov 21 10:51 runpilot2-wrapper.sh
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc      5112 Nov 21 10:51 queuedata.json
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:55:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:51 run_atlas
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:51 job.xml
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc      6392 Nov 25 02:51 init_data.xml
[2025-11-26 03:55:23] -rw-r--r--. 2 boinc boinc 409614933 Nov 25 02:51 EVNT.47493127._002359.pool.root.1
[2025-11-26 03:55:23] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:51 start_atlas.sh
[2025-11-26 03:55:23] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:51 shared
[2025-11-26 03:55:23] -rw-r--r--. 2 boinc boinc    590100 Nov 25 02:51 input.tar.gz
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:51 boinc_lockfile
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc      2783 Nov 25 02:51 pandaJob.out
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc    991801 Nov 25 02:53 agis_schedconf.cvmfs.json
[2025-11-26 03:55:23] drwx------. 5 boinc boinc      4096 Nov 25 02:53 pilot3
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc       533 Nov 26 03:30 boinc_task_state.xml
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc 917358598 Nov 26 03:51 HITS.47533967._003301.pool.root.1
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc      1029 Nov 26 03:53 memory_monitor_summary.json
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc   1516240 Nov 26 03:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc   2528872 Nov 26 03:53 log.47533967._003301.job.log.tgz.1
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc      7951 Nov 26 03:54 heartbeat.json
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc      8192 Nov 26 03:55 boinc_mmap_file
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc        29 Nov 26 03:55 wrapper_checkpoint.txt
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc        95 Nov 26 03:55 pilot_heartbeat.json
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc       819 Nov 26 03:55 pilotlog.txt
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc  11971477 Nov 26 03:55 log.47533967._003301.job.log.1
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc       353 Nov 26 03:55 output.list
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc       620 Nov 26 03:55 runtime_log
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc  14520320 Nov 26 03:55 result.tar.gz
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc      8833 Nov 26 03:55 runtime_log.err
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc       662 Nov 26 03:55 kWeNDm8ycg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaGJKDmHKGJxn.diag
[2025-11-26 03:55:23] -rw-r--r--. 1 boinc boinc     21443 Nov 26 03:55 stderr.txt
[2025-11-26 03:55:23] HITS file was successfully produced:
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc 917358598 Nov 26 03:51 shared/HITS.pool.root.1
[2025-11-26 03:55:23]  *** Contents of shared directory: ***
[2025-11-26 03:55:23] total 1310652
[2025-11-26 03:55:23] -rw-r--r--. 2 boinc boinc 409614933 Nov 25 02:51 ATLAS.root_0
[2025-11-26 03:55:23] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:51 start_atlas.sh
[2025-11-26 03:55:23] -rw-r--r--. 2 boinc boinc    590100 Nov 25 02:51 input.tar.gz
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc 917358598 Nov 26 03:51 HITS.pool.root.1
[2025-11-26 03:55:23] -rw-------. 1 boinc boinc  14520320 Nov 26 03:55 result.tar.gz
03:55:25 (1080): run_atlas exited; CPU time 339932.387309
03:55:25 (1080): called boinc_finish(0)

</stderr_txt>
]]>

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