Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:01:45 (8924): wrapper (7.7.26015): starting
00:01:45 (8924): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:01:45] Arguments: --nthreads 8
[2025-11-25 00:01:45] Threads: 8
[2025-11-25 00:01:45] Checking for CVMFS
[2025-11-25 00:01:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:49] 2.11.2.0 2281 169929 133124 153261 2 85 18688739 25165824 1027 130560 12 55323284 99.890 29322110 2099 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 00:01:49] CVMFS is ok
[2025-11-25 00:01:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:49] Checking for apptainer binary...
[2025-11-25 00:01:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:49] Running /usr/bin/apptainer --version
[2025-11-25 00:01:49] apptainer version 1.3.2-1.el7
[2025-11-25 00:01:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:59] cg-vwn445.simple-grid.lan
[2025-11-25 00:01:59] apptainer works
[2025-11-25 00:01:59] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:01:59] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:02:00] Starting ATLAS job with PandaID=6894285309
[2025-11-25 00:02:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:40:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:40:32] 2025-11-25 23:39:52,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:32] 2025-11-25 23:39:52,601 | INFO     | time since job start (88380s) is within the limit (172800.0s)
[2025-11-26 00:40:32] 2025-11-25 23:39:54,611 | INFO     | time since job start (88382s) is within the limit (172800.0s)
[2025-11-26 00:40:32] 2025-11-25 23:39:54,642 | INFO     | monitor loop #5954: job 0:6894285309 is in state 'finished'
[2025-11-26 00:40:32] 2025-11-25 23:39:54,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:32] 2025-11-25 23:39:56,619 | INFO     | time since job start (88384s) is within the limit (172800.0s)
[2025-11-26 00:40:32] 2025-11-25 23:39:57,147 | INFO     | monitor loop #5955: job 0:6894285309 is in state 'finished'
[2025-11-26 00:40:32] 2025-11-25 23:39:57,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:32] 2025-11-25 23:39:58,630 | INFO     | time since job start (88386s) is within the limit (172800.0s)
[2025-11-26 00:40:32] 2025-11-25 23:39:59,652 | INFO     | monitor loop #5956: job 0:6894285309 is in state 'finished'
[2025-11-26 00:40:32] 2025-11-25 23:39:59,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:32] 2025-11-25 23:40:00,637 | INFO     | time since job start (88388s) is within the limit (172800.0s)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,159 | INFO     | monitor loop #5957: job 0:6894285309 is in state 'finished'
[2025-11-26 00:40:32] 2025-11-25 23:40:02,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,276 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 00:40:32] 2025-11-25 23:40:02,277 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 00:40:32] 2025-11-25 23:40:02,279 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6894285309/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,280 | INFO     | extracted standard info from prmon json
[2025-11-26 00:40:32] 2025-11-25 23:40:02,280 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 00:40:32] 2025-11-25 23:40:02,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 00:40:32] 2025-11-25 23:40:02,310 | INFO     | fitting pss+swap vs Time
[2025-11-26 00:40:32] 2025-11-25 23:40:02,313 | INFO     | sum of square deviations: 922055075549.368
[2025-11-26 00:40:32] 2025-11-25 23:40:02,372 | INFO     | sum of deviations: 3950142561193.471
[2025-11-26 00:40:32] 2025-11-25 23:40:02,373 | INFO     | mean x: 1764070029.6940196
[2025-11-26 00:40:32] 2025-11-25 23:40:02,373 | INFO     | mean y: 2823567.9374130736
[2025-11-26 00:40:32] 2025-11-25 23:40:02,373 | INFO     | intersect: -7554564585.984292
[2025-11-26 00:40:32] 2025-11-25 23:40:02,375 | INFO     | chi2: 34.052204110815275
[2025-11-26 00:40:32] 2025-11-25 23:40:02,377 | INFO     | sum of square deviations: 912470945099.7153
[2025-11-26 00:40:32] 2025-11-25 23:40:02,439 | INFO     | sum of deviations: 4422894104983.374
[2025-11-26 00:40:32] 2025-11-25 23:40:02,439 | INFO     | mean x: 1764069877.1981857
[2025-11-26 00:40:32] 2025-11-25 23:40:02,440 | INFO     | mean y: 2831089.4459176552
[2025-11-26 00:40:32] 2025-11-25 23:40:02,440 | INFO     | intersect: -8547900638.002083
[2025-11-26 00:40:32] 2025-11-25 23:40:02,442 | INFO     | chi2: 30.851938967571403
[2025-11-26 00:40:32] 2025-11-25 23:40:02,442 | INFO     | current chi2=30.851938967571403 (change=9.398114532701982 %)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,442 | INFO     | right removable region: 1432
[2025-11-26 00:40:32] 2025-11-25 23:40:02,444 | INFO     | sum of square deviations: 912469897729.7151
[2025-11-26 00:40:32] 2025-11-25 23:40:02,535 | INFO     | sum of deviations: 3332540202226.0493
[2025-11-26 00:40:32] 2025-11-25 23:40:02,536 | INFO     | mean x: 1764070182.1981857
[2025-11-26 00:40:32] 2025-11-25 23:40:02,536 | INFO     | mean y: 2833394.249825541
[2025-11-26 00:40:32] 2025-11-25 23:40:02,536 | INFO     | intersect: -6439937831.793479
[2025-11-26 00:40:32] 2025-11-25 23:40:02,549 | INFO     | chi2: 28.87713116323915
[2025-11-26 00:40:32] 2025-11-25 23:40:02,549 | INFO     | current chi2=28.87713116323915 (change=15.19746836573342 %)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,549 | INFO     | left removable region: 10
[2025-11-26 00:40:32] 2025-11-25 23:40:02,551 | INFO     | sum of square deviations: 891618052414.301
[2025-11-26 00:40:32] 2025-11-25 23:40:02,617 | INFO     | sum of deviations: 3324471993351.2603
[2025-11-26 00:40:32] 2025-11-25 23:40:02,618 | INFO     | mean x: 1764070151.7074542
[2025-11-26 00:40:32] 2025-11-25 23:40:02,618 | INFO     | mean y: 2852043.277074543
[2025-11-26 00:40:32] 2025-11-25 23:40:02,618 | INFO     | intersect: -6574630094.70602
[2025-11-26 00:40:32] 2025-11-25 23:40:02,620 | INFO     | chi2: 20.375851577605854
[2025-11-26 00:40:32] 2025-11-25 23:40:02,620 | INFO     | current memory leak: 3.73 B/s (using 1422 data points, chi2=20.38)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,622 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,622 | INFO     | ..............................
[2025-11-26 00:40:32] 2025-11-25 23:40:02,622 | INFO     | . Timing measurements:
[2025-11-26 00:40:32] 2025-11-25 23:40:02,622 | INFO     | . get job = 0 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,623 | INFO     | . initial setup = 15 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,623 | INFO     | . payload setup = 187 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,623 | INFO     | . stage-in = 0 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,623 | INFO     | . payload execution = 87876 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,623 | INFO     | . stage-out = 4 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,623 | INFO     | . log creation = 1 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,623 | INFO     | ..............................
[2025-11-26 00:40:32] 2025-11-25 23:40:02,687 | INFO     | time since job start (88390s) is within the limit (172800.0s)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,755 | INFO     | 
[2025-11-26 00:40:32] 2025-11-25 23:40:02,755 | INFO     | job summary report
[2025-11-26 00:40:32] 2025-11-25 23:40:02,755 | INFO     | --------------------------------------------------
[2025-11-26 00:40:32] 2025-11-25 23:40:02,755 | INFO     | PanDA job id: 6894285309
[2025-11-26 00:40:32] 2025-11-25 23:40:02,755 | INFO     | task id: 47533967
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | errors: (none)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | pilot state: finished 
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | transexitcode: 0
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | exeerrorcode: 0
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | exeerrordiag: 
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | exitcode: 0
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | exitmsg: OK
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | cpuconsumptiontime: 339329 s
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | nevents: 1000
[2025-11-26 00:40:32] 2025-11-25 23:40:02,756 | INFO     | neventsw: 0
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | pid: 19132
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | pgrp: 19132
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | corecount: 8
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | event service: False
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | sizes: {0: 2284033, 1: 2284288, 2: 2284288, 12: 2284316, 23: 2284344, 34: 2284372, 44: 2284528, 55: 2284556, 66: 2284584, 77: 2284612, 88: 2284668, 98: 2284976, 10
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | --------------------------------------------------
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | 
[2025-11-26 00:40:32] 2025-11-25 23:40:02,757 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-26 00:40:32] 2025-11-25 23:40:02,787 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,787 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,787 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 00:40:32] 2025-11-25 23:40:02,790 | INFO     | job 6894285309 has completed (purged errors)
[2025-11-26 00:40:32] 2025-11-25 23:40:02,790 | INFO     | overall cleanup function is called
[2025-11-26 00:40:32] 2025-11-25 23:40:03,809 | INFO     | --- collectZombieJob: --- 10, [19132]
[2025-11-26 00:40:32] 2025-11-25 23:40:03,809 | INFO     | zombie collector waiting for pid 19132
[2025-11-26 00:40:32] 2025-11-25 23:40:03,810 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 00:40:32] 2025-11-25 23:40:03,810 | INFO     | collected zombie processes
[2025-11-26 00:40:32] 2025-11-25 23:40:03,810 | INFO     | will attempt to kill all subprocesses of pid=19132
[2025-11-26 00:40:32] 2025-11-25 23:40:03,934 | INFO     | process IDs to be killed: [19132] (in reverse order)
[2025-11-26 00:40:32] 2025-11-25 23:40:04,005 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 00:40:32] 2025-11-25 23:40:04,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 00:40:32] 2025-11-25 23:40:04,009 | INFO     | did not find any defunct processes belonging to 19132
[2025-11-26 00:40:32] 2025-11-25 23:40:04,012 | INFO     | did not find any defunct processes belonging to 19132
[2025-11-26 00:40:32] 2025-11-25 23:40:04,014 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 00:40:32] 2025-11-25 23:40:04,015 | INFO     | ready for new job
[2025-11-26 00:40:32] 2025-11-25 23:40:04,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 00:40:32] 2025-11-25 23:40:04,021 | INFO     | ***************************************
[2025-11-26 00:40:32] 2025-11-25 23:40:04,022 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 00:40:32] 2025-11-25 23:40:04,022 | INFO     | ***************************************
[2025-11-26 00:40:32] 2025-11-25 23:40:04,022 | INFO     | 
[2025-11-26 00:40:32] 2025-11-25 23:40:04,022 | INFO     | pilot is running in a VM
[2025-11-26 00:40:32] 2025-11-25 23:40:04,023 | INFO     | architecture information:
[2025-11-26 00:40:32] 2025-11-25 23:40:04,023 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:40:32] 2025-11-25 23:40:04,042 | INFO     | cat /etc/os-release:
[2025-11-26 00:40:32] NAME="CentOS Linux"
[2025-11-26 00:40:32] VERSION="7 (Core)"
[2025-11-26 00:40:32] ID="centos"
[2025-11-26 00:40:32] ID_LIKE="rhel fedora"
[2025-11-26 00:40:32] VERSION_ID="7"
[2025-11-26 00:40:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:40:32] ANSI_COLOR="0;31"
[2025-11-26 00:40:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:40:32] HOME_URL="https://www.centos.org/"
[2025-11-26 00:40:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:40:32] 
[2025-11-26 00:40:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:40:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:40:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:40:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:40:32] 
[2025-11-26 00:40:32] 2025-11-25 23:40:04,042 | INFO     | ***************************************
[2025-11-26 00:40:32] 2025-11-25 23:40:04,545 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-26 00:40:32] 2025-11-25 23:40:04,586 | INFO     | sufficient remaining disk space (494646853632 B)
[2025-11-26 00:40:32] 2025-11-25 23:40:04,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:40:32] 2025-11-25 23:40:04,587 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:40:32] 2025-11-25 23:40:04,587 | INFO     | update_server=False
[2025-11-26 00:40:32] 2025-11-25 23:40:04,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:40:32] 2025-11-25 23:40:04,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:40:32] 2025-11-25 23:40:04,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:40:32] 2025-11-25 23:40:04,592 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 00:40:32] 2025-11-25 23:40:04,592 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:40:32] 2025-11-25 23:40:04,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:40:32] 2025-11-25 23:40:04,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:40:32] 2025-11-25 23:40:04,674 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 00:40:32] 2025-11-25 23:40:04,675 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 00:40:32] 2025-11-25 23:40:04,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:40:32] 2025-11-25 23:40:04,675 | INFO     | will abort loop
[2025-11-26 00:40:32] 2025-11-25 23:40:04,766 | INFO     | all data control threads have been joined
[2025-11-26 00:40:32] 2025-11-25 23:40:04,982 | INFO     | all payload control threads have been joined
[2025-11-26 00:40:32] 2025-11-25 23:40:05,593 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:05,594 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:05,680 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:05,683 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:05,772 | INFO     | [data] control thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:05,987 | INFO     | all job control threads have been joined
[2025-11-26 00:40:32] 2025-11-25 23:40:05,988 | INFO     | [payload] control thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:06,104 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:06,452 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:06,500 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:06,599 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:06,848 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:06,992 | INFO     | [job] control thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:07,022 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:07,028 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:07,041 | INFO     | [job] validate thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:07,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:40:32] 2025-11-25 23:40:11,931 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:40:32] 2025-11-25 23:40:25,486 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:40:32] 2025-11-25 23:40:26,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693398677312)>', '<ExcThread(monitor, started 140692508628736)>']
[2025-11-26 00:40:32] 2025-11-25 23:40:26,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:40:32] 2025-11-25 23:40:26,713 | INFO     | [monitor] control thread has ended
[2025-11-26 00:40:32] 2025-11-25 23:40:31,538 | INFO     | all workflow threads have been joined
[2025-11-26 00:40:32] 2025-11-25 23:40:31,538 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:40:32] 2025-11-25 23:40:31,539 | INFO     | traces error code: 0
[2025-11-26 00:40:32] 2025-11-25 23:40:31,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:40:32] 2025-11-25 23:40:31,754 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:40:32] 2025-11-25 23:40:31,845 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:40:32] 2025-11-25 23:40:31,891 [wrapper] pilotpid: 12663
[2025-11-26 00:40:32] 2025-11-25 23:40:31,931 [wrapper] Pilot exit status: 0
[2025-11-26 00:40:32] 2025-11-25 23:40:32,211 [wrapper] pandaids: 6894285309
[2025-11-26 00:40:32] 2025-11-25 23:40:32,368 [wrapper] cleanup supervisor_pilot 15712 12664
[2025-11-26 00:40:32] 2025-11-25 23:40:32,372 [wrapper] Test setup, not cleaning
[2025-11-26 00:40:32] 2025-11-25 23:40:32,391 [wrapper] apfmon messages muted
[2025-11-26 00:40:32] 2025-11-25 23:40:32,399 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:40:32] 2025-11-25 23:40:32,408 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:40:32]  *** Error codes and diagnostics ***
[2025-11-26 00:40:32]     "exeErrorCode": 0,
[2025-11-26 00:40:32]     "exeErrorDiag": "",
[2025-11-26 00:40:32]     "pilotErrorCode": 0,
[2025-11-26 00:40:32]     "pilotErrorDiag": "",
[2025-11-26 00:40:32]  *** Listing of results directory ***
[2025-11-26 00:40:32] total 1316760
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc    576529 Nov 21 10:27 pilot3.tar.gz
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc      5112 Nov 21 10:49 queuedata.json
[2025-11-26 00:40:32] -rwx------. 1 boinc boinc     36292 Nov 21 10:50 runpilot2-wrapper.sh
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:40:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 00:01 run_atlas
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc       105 Nov 25 00:01 job.xml
[2025-11-26 00:40:32] -rw-r--r--. 2 boinc boinc 409583751 Nov 25 00:01 EVNT.47493127._002358.pool.root.1
[2025-11-26 00:40:32] -rw-r--r--. 2 boinc boinc     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 00:40:32] drwxrwx--x. 2 boinc boinc        68 Nov 25 00:01 shared
[2025-11-26 00:40:32] -rw-r--r--. 2 boinc boinc    590106 Nov 25 00:01 input.tar.gz
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc      6393 Nov 25 00:01 init_data.xml
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc         0 Nov 25 00:01 boinc_lockfile
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc      2785 Nov 25 00:01 pandaJob.out
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc    991801 Nov 25 00:06 agis_schedconf.cvmfs.json
[2025-11-26 00:40:32] drwx------. 5 boinc boinc      4096 Nov 25 00:06 pilot3
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc       533 Nov 26 00:09 boinc_task_state.xml
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc 906175225 Nov 26 00:37 HITS.47533967._003294.pool.root.1
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc      1032 Nov 26 00:38 memory_monitor_summary.json
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc   1516240 Nov 26 00:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc   2522690 Nov 26 00:38 log.47533967._003294.job.log.tgz.1
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc        95 Nov 26 00:40 pilot_heartbeat.json
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc      8635 Nov 26 00:40 heartbeat.json
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc      8192 Nov 26 00:40 boinc_mmap_file
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc        29 Nov 26 00:40 wrapper_checkpoint.txt
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc      4802 Nov 26 00:40 pilotlog.txt
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc  11822248 Nov 26 00:40 log.47533967._003294.job.log.1
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc       353 Nov 26 00:40 output.list
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc       620 Nov 26 00:40 runtime_log
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc  14366720 Nov 26 00:40 result.tar.gz
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc      8833 Nov 26 00:40 runtime_log.err
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc       662 Nov 26 00:40 j7sKDmRxcg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWGJKDmyquWWm.diag
[2025-11-26 00:40:32] -rw-r--r--. 1 boinc boinc     21376 Nov 26 00:40 stderr.txt
[2025-11-26 00:40:32] HITS file was successfully produced:
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc 906175225 Nov 26 00:37 shared/HITS.pool.root.1
[2025-11-26 00:40:32]  *** Contents of shared directory: ***
[2025-11-26 00:40:32] total 1299556
[2025-11-26 00:40:32] -rw-r--r--. 2 boinc boinc 409583751 Nov 25 00:01 ATLAS.root_0
[2025-11-26 00:40:32] -rw-r--r--. 2 boinc boinc     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 00:40:32] -rw-r--r--. 2 boinc boinc    590106 Nov 25 00:01 input.tar.gz
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc 906175225 Nov 26 00:37 HITS.pool.root.1
[2025-11-26 00:40:32] -rw-------. 1 boinc boinc  14366720 Nov 26 00:40 result.tar.gz
00:40:34 (8924): run_atlas exited; CPU time 339817.347409
00:40:34 (8924): called boinc_finish(0)

</stderr_txt>
]]>

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