Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:17:40 (1159833): wrapper (7.7.26015): starting
23:17:40 (1159833): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 23:17:40] Arguments: --nthreads 8
[2025-11-21 23:17:40] Threads: 8
[2025-11-21 23:17:40] Checking for CVMFS
[2025-11-21 23:17:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 23:17:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 23:17:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 23:17:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 23:17:53] 2.13.2.0 2325231 24380 213872 153158 3 16 29354783 40960000 28308 16776704 0 171087135 99.740 121166630 49691 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 23:17:53] CVMFS is ok
[2025-11-21 23:17:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 23:17:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 23:17:53] Further information can be found at the LHC@home message board.
[2025-11-21 23:17:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 23:17:53] Checking for apptainer binary...
[2025-11-21 23:17:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 23:17:53] Running /usr/bin/apptainer --version
[2025-11-21 23:17:54] apptainer version 1.4.4-1.el9
[2025-11-21 23:17:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 23:18:07] c-208-37.aglt2.org
[2025-11-21 23:18:07] apptainer works
[2025-11-21 23:18:07] Set ATHENA_PROC_NUMBER=8
[2025-11-21 23:18:07] Set ATHENA_CORE_NUMBER=8
[2025-11-21 23:18:07] Starting ATLAS job with PandaID=6894253999
[2025-11-21 23:18:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:32:32]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:32:32] 2025-11-22 20:31:27,556 | INFO     | monitor loop #3192: job 0:6894253999 is in state 'finished'
[2025-11-22 15:32:32] 2025-11-22 20:31:27,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:32:32] 2025-11-22 20:31:29,289 | INFO     | PID=1183319 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 15:32:32] 2025-11-22 20:31:29,290 | INFO     | .. there are 35 such processes running
[2025-11-22 15:32:32] 2025-11-22 20:31:30,063 | INFO     | monitor loop #3193: job 0:6894253999 is in state 'finished'
[2025-11-22 15:32:32] 2025-11-22 20:31:30,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:32:32] 2025-11-22 20:31:30,291 | INFO     | time since job start (58316s) is within the limit (172800.0s)
[2025-11-22 15:32:32] 2025-11-22 20:31:32,298 | INFO     | time since job start (58318s) is within the limit (172800.0s)
[2025-11-22 15:32:32] 2025-11-22 20:31:32,573 | INFO     | monitor loop #3194: job 0:6894253999 is in state 'finished'
[2025-11-22 15:32:32] 2025-11-22 20:31:32,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:32:32] 2025-11-22 20:31:34,304 | INFO     | time since job start (58320s) is within the limit (172800.0s)
[2025-11-22 15:32:32] 2025-11-22 20:31:35,084 | INFO     | monitor loop #3195: job 0:6894253999 is in state 'finished'
[2025-11-22 15:32:32] 2025-11-22 20:31:35,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:32:32] 2025-11-22 20:31:36,312 | INFO     | time since job start (58322s) is within the limit (172800.0s)
[2025-11-22 15:32:32] 2025-11-22 20:31:37,589 | INFO     | monitor loop #3196: job 0:6894253999 is in state 'finished'
[2025-11-22 15:32:32] 2025-11-22 20:31:37,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,300 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 15:32:32] 2025-11-22 20:31:38,313 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3759.868765625
[2025-11-22 15:32:32] 2025-11-22 20:31:38,320 | INFO     | time since job start (58324s) is within the limit (172800.0s)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,350 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6894253999/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,350 | INFO     | extracted standard info from prmon json
[2025-11-22 15:32:32] 2025-11-22 20:31:38,350 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:32:32] 2025-11-22 20:31:38,350 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:32:32] 2025-11-22 20:31:38,373 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:32:32] 2025-11-22 20:31:38,382 | INFO     | sum of square deviations: 270052520343.99362
[2025-11-22 15:32:32] 2025-11-22 20:31:38,416 | INFO     | sum of deviations: 3961073944226.5117
[2025-11-22 15:32:32] 2025-11-22 20:31:38,416 | INFO     | mean x: 1763814356.3675392
[2025-11-22 15:32:32] 2025-11-22 20:31:38,416 | INFO     | mean y: 2983727.9130890053
[2025-11-22 15:32:32] 2025-11-22 20:31:38,416 | INFO     | intersect: -25868276723.796696
[2025-11-22 15:32:32] 2025-11-22 20:31:38,417 | INFO     | chi2: 31.98889894463695
[2025-11-22 15:32:32] 2025-11-22 20:31:38,417 | INFO     | sum of square deviations: 265833326148.31958
[2025-11-22 15:32:32] 2025-11-22 20:31:38,460 | INFO     | sum of deviations: 4317861782610.21
[2025-11-22 15:32:32] 2025-11-22 20:31:38,460 | INFO     | mean x: 1763814203.88
[2025-11-22 15:32:32] 2025-11-22 20:31:38,460 | INFO     | mean y: 2996618.510526316
[2025-11-22 15:32:32] 2025-11-22 20:31:38,460 | INFO     | intersect: -28646180115.294746
[2025-11-22 15:32:32] 2025-11-22 20:31:38,461 | INFO     | chi2: 27.690848420483356
[2025-11-22 15:32:32] 2025-11-22 20:31:38,461 | INFO     | current chi2=27.690848420483356 (change=13.43606896752593 %)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,461 | INFO     | right removable region: 949
[2025-11-22 15:32:32] 2025-11-22 20:31:38,462 | INFO     | sum of square deviations: 265831946938.31976
[2025-11-22 15:32:32] 2025-11-22 20:31:38,516 | INFO     | sum of deviations: 3565881704204.2
[2025-11-22 15:32:32] 2025-11-22 20:31:38,516 | INFO     | mean x: 1763814508.88
[2025-11-22 15:32:32] 2025-11-22 20:31:38,516 | INFO     | mean y: 2998005.510526316
[2025-11-22 15:32:32] 2025-11-22 20:31:38,517 | INFO     | intersect: -23656889224.990242
[2025-11-22 15:32:32] 2025-11-22 20:31:38,517 | INFO     | chi2: 28.15027138879568
[2025-11-22 15:32:32] 2025-11-22 20:31:38,517 | INFO     | current chi2=28.15027138879568 (change=11.999873964042235 %)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,517 | INFO     | left removable region: 10
[2025-11-22 15:32:32] 2025-11-22 20:31:38,518 | INFO     | sum of square deviations: 256703493512.59644
[2025-11-22 15:32:32] 2025-11-22 20:31:38,574 | INFO     | sum of deviations: 3632463629196.4033
[2025-11-22 15:32:32] 2025-11-22 20:31:38,574 | INFO     | mean x: 1763814478.4068158
[2025-11-22 15:32:32] 2025-11-22 20:31:38,574 | INFO     | mean y: 3026436.6560170394
[2025-11-22 15:32:32] 2025-11-22 20:31:38,574 | INFO     | intersect: -24955698720.500416
[2025-11-22 15:32:32] 2025-11-22 20:31:38,575 | INFO     | chi2: 20.192310059250264
[2025-11-22 15:32:32] 2025-11-22 20:31:38,575 | INFO     | current memory leak: 14.15 B/s (using 939 data points, chi2=20.19)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,575 | INFO     | could have reported an average CPU frequency of 3746 MHz (35 samples)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,575 | INFO     | ..............................
[2025-11-22 15:32:32] 2025-11-22 20:31:38,575 | INFO     | . Timing measurements:
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | . get job = 0 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | . initial setup = 3 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | . payload setup = 25 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | . stage-in = 0 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | . payload execution = 58210 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | . stage-out = 4 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | . log creation = 1 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,576 | INFO     | ..............................
[2025-11-22 15:32:32] 2025-11-22 20:31:38,788 | INFO     | 
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | job summary report
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | --------------------------------------------------
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | PanDA job id: 6894253999
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | task id: 47533967
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | errors: (none)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | pilot state: finished 
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | transexitcode: 0
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | exeerrorcode: 0
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | exeerrordiag: 
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | exitcode: 0
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | exitmsg: OK
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | cpuconsumptiontime: 145058 s
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | nevents: 1000
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | neventsw: 0
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | pid: 1192350
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | pgrp: 1192350
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | corecount: 8
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | event service: False
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | sizes: {0: 2298580, 1: 2298835, 2: 2298835, 12: 2298863, 22: 2299153, 23: 2299181, 58238: 2349336, 58243: 2358386, 58281: 2358576}
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | --------------------------------------------------
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | 
[2025-11-22 15:32:32] 2025-11-22 20:31:38,793 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | job 6894253999 has completed (purged errors)
[2025-11-22 15:32:32] 2025-11-22 20:31:38,939 | INFO     | overall cleanup function is called
[2025-11-22 15:32:32] 2025-11-22 20:31:39,994 | INFO     | --- collectZombieJob: --- 10, [1192350]
[2025-11-22 15:32:32] 2025-11-22 20:31:39,995 | INFO     | zombie collector waiting for pid 1192350
[2025-11-22 15:32:32] 2025-11-22 20:31:39,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:32:32] 2025-11-22 20:31:39,995 | INFO     | collected zombie processes
[2025-11-22 15:32:32] 2025-11-22 20:31:39,995 | INFO     | will attempt to kill all subprocesses of pid=1192350
[2025-11-22 15:32:32] 2025-11-22 20:31:41,730 | INFO     | process IDs to be killed: [1192350] (in reverse order)
[2025-11-22 15:32:32] 2025-11-22 20:31:42,091 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:32:32] 2025-11-22 20:31:42,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:32:32] 2025-11-22 20:31:42,119 | INFO     | did not find any defunct processes belonging to 1192350
[2025-11-22 15:32:32] 2025-11-22 20:31:42,152 | INFO     | did not find any defunct processes belonging to 1192350
[2025-11-22 15:32:32] 2025-11-22 20:31:42,157 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:32:32] 2025-11-22 20:31:42,157 | INFO     | ready for new job
[2025-11-22 15:32:32] 2025-11-22 20:31:42,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:32:32] 2025-11-22 20:31:42,162 | INFO     | ***************************************
[2025-11-22 15:32:32] 2025-11-22 20:31:42,162 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:32:32] 2025-11-22 20:31:42,162 | INFO     | ***************************************
[2025-11-22 15:32:32] 2025-11-22 20:31:42,162 | INFO     | 
[2025-11-22 15:32:32] 2025-11-22 20:31:42,172 | INFO     | architecture information:
[2025-11-22 15:32:32] 2025-11-22 20:31:42,173 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:32:32] 2025-11-22 20:31:42,239 | INFO     | cat /etc/os-release:
[2025-11-22 15:32:32] NAME="CentOS Linux"
[2025-11-22 15:32:32] VERSION="7 (Core)"
[2025-11-22 15:32:32] ID="centos"
[2025-11-22 15:32:32] ID_LIKE="rhel fedora"
[2025-11-22 15:32:32] VERSION_ID="7"
[2025-11-22 15:32:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:32:32] ANSI_COLOR="0;31"
[2025-11-22 15:32:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:32:32] HOME_URL="https://www.centos.org/"
[2025-11-22 15:32:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:32:32] 
[2025-11-22 15:32:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:32:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:32:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:32:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:32:32] 
[2025-11-22 15:32:32] 2025-11-22 20:31:42,239 | INFO     | ***************************************
[2025-11-22 15:32:32] 2025-11-22 20:31:42,743 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-22 15:32:32] 2025-11-22 20:31:42,820 | INFO     | sufficient remaining disk space (159704416256 B)
[2025-11-22 15:32:32] 2025-11-22 20:31:42,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:32:32] 2025-11-22 20:31:42,820 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:32:32] 2025-11-22 20:31:42,820 | INFO     | update_server=False
[2025-11-22 15:32:32] 2025-11-22 20:31:42,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:32:32] 2025-11-22 20:31:42,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:32:32] 2025-11-22 20:31:43,468 | INFO     | all payload control threads have been joined
[2025-11-22 15:32:32] 2025-11-22 20:31:43,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:32:32] 2025-11-22 20:31:43,646 | INFO     | aborting loop
[2025-11-22 15:32:32] 2025-11-22 20:31:43,694 | INFO     | all data control threads have been joined
[2025-11-22 15:32:32] 2025-11-22 20:31:43,828 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:43,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:32:32] 2025-11-22 20:31:43,844 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:43,895 | INFO     | all job control threads have been joined
[2025-11-22 15:32:32] 2025-11-22 20:31:43,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:32:32] 2025-11-22 20:31:43,899 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:43,946 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:44,358 | INFO     | [job] validate thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:44,475 | INFO     | [payload] control thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:44,508 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:44,652 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:44,713 | INFO     | [data] control thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:44,835 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:44,902 | INFO     | [job] control thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:45,016 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:45,299 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:45,342 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:45,905 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:31:46,904 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:32:32] 2025-11-22 20:32:13,219 | INFO     | PID=1183319 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 15:32:32] 2025-11-22 20:32:13,222 | INFO     | .. there are 35 such processes running
[2025-11-22 15:32:32] 2025-11-22 20:32:13,223 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:32:32] 2025-11-22 20:32:13,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:32:32] 2025-11-22 20:32:13,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:32:32] 2025-11-22 20:32:22,741 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:32:32] 2025-11-22 20:32:23,149 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140587350107968)>', '<ExcThread(monitor, started 140586342405888)>']
[2025-11-22 15:32:32] 2025-11-22 20:32:23,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:32:32] 2025-11-22 20:32:23,291 | INFO     | [monitor] control thread has ended
[2025-11-22 15:32:32] 2025-11-22 20:32:28,179 | INFO     | all workflow threads have been joined
[2025-11-22 15:32:32] 2025-11-22 20:32:28,180 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:32:32] 2025-11-22 20:32:28,184 | INFO     | traces error code: 0
[2025-11-22 15:32:32] 2025-11-22 20:32:28,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:32:32] 2025-11-22 20:32:29,443 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:32:32] 2025-11-22 20:32:29,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:32:32] 2025-11-22 20:32:29,588 [wrapper] pilotpid: 1183319
[2025-11-22 15:32:32] 2025-11-22 20:32:29,648 [wrapper] Pilot exit status: 0
[2025-11-22 15:32:32] 2025-11-22 20:32:29,958 [wrapper] pandaids: 6894253999
[2025-11-22 15:32:32] 2025-11-22 20:32:30,662 [wrapper] cleanup supervisor_pilot 3100807 1183320
[2025-11-22 15:32:32] 2025-11-22 20:32:30,683 [wrapper] Test setup, not cleaning
[2025-11-22 15:32:32] 2025-11-22 20:32:30,717 [wrapper] apfmon messages muted
[2025-11-22 15:32:32] 2025-11-22 20:32:30,772 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:32:32] 2025-11-22 20:32:30,817 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:32:32]  *** Error codes and diagnostics ***
[2025-11-22 15:32:32]     "exeErrorCode": 0,
[2025-11-22 15:32:32]     "exeErrorDiag": "",
[2025-11-22 15:32:32]     "pilotErrorCode": 0,
[2025-11-22 15:32:32]     "pilotErrorDiag": "",
[2025-11-22 15:32:32]  *** Listing of results directory ***
[2025-11-22 15:32:32] total 1328248
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 21:10 pilot3.tar.gz
[2025-11-22 15:32:32] -rwx------. 1 boincer umatlas     36292 Nov 20 21:48 runpilot2-wrapper.sh
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 21:48 queuedata.json
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas       100 Nov 21 23:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:32:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 23:17 run_atlas
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas       105 Nov 21 23:17 job.xml
[2025-11-22 15:32:32] -rw-r--r--. 2 boincer umatlas 410372582 Nov 21 23:17 EVNT.47493127._002133.pool.root.1
[2025-11-22 15:32:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 23:17 start_atlas.sh
[2025-11-22 15:32:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 23:17 shared
[2025-11-22 15:32:32] -rw-r--r--. 2 boincer umatlas    590105 Nov 21 23:17 input.tar.gz
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas         0 Nov 21 23:17 boinc_lockfile
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 23:18 pandaJob.out
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas      2077 Nov 21 23:18 stderr.txt
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas        57 Nov 21 23:18 setup.sh.local
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas    989752 Nov 21 23:19 agis_schedconf.cvmfs.json
[2025-11-22 15:32:32] drwx------. 5 boincer umatlas      4096 Nov 21 23:19 pilot3
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas       533 Nov 22 14:56 boinc_task_state.xml
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas 927747179 Nov 22 15:29 HITS.47533967._001046.pool.root.1
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas      7175 Nov 22 15:30 init_data.xml
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas      1077 Nov 22 15:30 memory_monitor_summary.json
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas   1526164 Nov 22 15:30 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas   2077158 Nov 22 15:30 log.47533967._001046.job.log.tgz.1
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas      7950 Nov 22 15:31 heartbeat.json
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas        95 Nov 22 15:32 pilot_heartbeat.json
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas      4825 Nov 22 15:32 pilotlog.txt
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 15:32 boinc_mmap_file
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas        29 Nov 22 15:32 wrapper_checkpoint.txt
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas   6974604 Nov 22 15:32 log.47533967._001046.job.log.1
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas       353 Nov 22 15:32 output.list
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas       620 Nov 22 15:32 runtime_log
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas   9072640 Nov 22 15:32 result.tar.gz
[2025-11-22 15:32:32] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 15:32 runtime_log.err
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas       666 Nov 22 15:32 3sfKDmQNWg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJHHKDmPitEmn.diag
[2025-11-22 15:32:32] HITS file was successfully produced:
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas 927747179 Nov 22 15:29 shared/HITS.pool.root.1
[2025-11-22 15:32:32]  *** Contents of shared directory: ***
[2025-11-22 15:32:32] total 1316224
[2025-11-22 15:32:32] -rw-r--r--. 2 boincer umatlas 410372582 Nov 21 23:17 ATLAS.root_0
[2025-11-22 15:32:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 23:17 start_atlas.sh
[2025-11-22 15:32:32] -rw-r--r--. 2 boincer umatlas    590105 Nov 21 23:17 input.tar.gz
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas 927747179 Nov 22 15:29 HITS.pool.root.1
[2025-11-22 15:32:32] -rw-------. 1 boincer umatlas   9072640 Nov 22 15:32 result.tar.gz
15:32:34 (1159833): run_atlas exited; CPU time 145732.994490
15:32:34 (1159833): called boinc_finish(0)

</stderr_txt>
]]>

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