Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:43:46 (810142): wrapper (7.7.26015): starting
19:43:46 (810142): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 19:43:46] Arguments: --nthreads 3
[2025-11-24 19:43:46] Threads: 3
[2025-11-24 19:43:46] Checking for CVMFS
[2025-11-24 19:43:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 19:43:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 19:43:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 19:43:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 19:43:46] 2.9.2.0 3836662 8761 92512 153255 1 81 33647736 36864001 0 130560 0 3253879 99.922 473382 6728 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 19:43:46] CVMFS is ok
[2025-11-24 19:43:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 19:43:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 19:43:46] Further information can be found at the LHC@home message board.
[2025-11-24 19:43:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 19:43:46] Checking for apptainer binary...
[2025-11-24 19:43:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 19:43:46] Running /usr/bin/apptainer --version
[2025-11-24 19:43:46] apptainer version 1.4.1-1.1
[2025-11-24 19:43:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 19:43:46] thA327
[2025-11-24 19:43:46] apptainer works
[2025-11-24 19:43:46] Set ATHENA_PROC_NUMBER=3
[2025-11-24 19:43:46] Set ATHENA_CORE_NUMBER=3
[2025-11-24 19:43:46] Starting ATLAS job with PandaID=6894283576
[2025-11-24 19:43:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:55:35]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:55:35] 2025-11-25 02:54:35,776 | INFO     | architecture information:
[2025-11-25 03:55:35] 2025-11-25 02:54:35,776 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:55:35] 2025-11-25 02:54:35,785 | INFO     | cat /etc/os-release:
[2025-11-25 03:55:35] NAME="CentOS Linux"
[2025-11-25 03:55:35] VERSION="7 (Core)"
[2025-11-25 03:55:35] ID="centos"
[2025-11-25 03:55:35] ID_LIKE="rhel fedora"
[2025-11-25 03:55:35] VERSION_ID="7"
[2025-11-25 03:55:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:55:35] ANSI_COLOR="0;31"
[2025-11-25 03:55:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:55:35] HOME_URL="https://www.centos.org/"
[2025-11-25 03:55:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:55:35] 
[2025-11-25 03:55:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:55:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:55:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:55:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:55:35] 
[2025-11-25 03:55:35] 2025-11-25 02:54:35,785 | INFO     | ***************************************
[2025-11-25 03:55:35] 2025-11-25 02:54:36,288 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 03:55:35] 2025-11-25 02:54:36,302 | INFO     | sufficient remaining disk space (368238919680 B)
[2025-11-25 03:55:35] 2025-11-25 02:54:36,302 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:55:35] 2025-11-25 02:54:36,302 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:55:35] 2025-11-25 02:54:36,302 | INFO     | update_server=False
[2025-11-25 03:55:35] 2025-11-25 02:54:36,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:55:35] 2025-11-25 02:54:36,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:55:35] 2025-11-25 02:54:36,302 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:55:35] 2025-11-25 02:54:37,152 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:55:35] 2025-11-25 02:54:37,152 | INFO     | aborting loop
[2025-11-25 03:55:35] 2025-11-25 02:54:37,268 | INFO     | all data control threads have been joined
[2025-11-25 03:55:35] 2025-11-25 02:54:37,305 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:37,307 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:37,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:55:35] 2025-11-25 02:54:37,369 | INFO     | all payload control threads have been joined
[2025-11-25 03:55:35] 2025-11-25 02:54:37,406 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:37,711 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:37,827 | INFO     | all job control threads have been joined
[2025-11-25 03:55:35] 2025-11-25 02:54:37,941 | INFO     | [job] validate thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:37,950 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:37,972 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:38,158 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:38,274 | INFO     | [data] control thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:38,375 | INFO     | [payload] control thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:38,411 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:38,490 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:38,833 | INFO     | [job] control thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:38,908 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:39,315 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:54:40,305 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:55:35] 2025-11-25 02:55:07,110 | INFO     | PID=813860 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 03:55:35] 2025-11-25 02:55:07,110 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:55:35] 2025-11-25 02:55:07,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:55:35] 2025-11-25 02:55:07,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:55:35] 2025-11-25 02:55:27,855 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:55:35] 2025-11-25 02:55:29,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075121309504)>', '<ExcThread(monitor, started 140074637317888)>']
[2025-11-25 03:55:35] 2025-11-25 02:55:30,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:55:35] 2025-11-25 02:55:30,234 | INFO     | [monitor] control thread has ended
[2025-11-25 03:55:35] 2025-11-25 02:55:34,876 | INFO     | all workflow threads have been joined
[2025-11-25 03:55:35] 2025-11-25 02:55:34,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:55:35] 2025-11-25 02:55:34,877 | INFO     | traces error code: 0
[2025-11-25 03:55:35] 2025-11-25 02:55:34,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:55:35] 2025-11-25 02:55:34,926 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:55:35] 2025-11-25 02:55:34,929 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:55:35] 2025-11-25 02:55:34,931 [wrapper] pilotpid: 813860
[2025-11-25 03:55:35] 2025-11-25 02:55:34,933 [wrapper] Pilot exit status: 0
[2025-11-25 03:55:35] 2025-11-25 02:55:34,941 [wrapper] pandaids: 6894283576
[2025-11-25 03:55:35] 2025-11-25 02:55:34,957 [wrapper] cleanup supervisor_pilot  870333 813861
[2025-11-25 03:55:35] 2025-11-25 02:55:34,959 [wrapper] Test setup, not cleaning
[2025-11-25 03:55:35] 2025-11-25 02:55:34,961 [wrapper] apfmon messages muted
[2025-11-25 03:55:35] 2025-11-25 02:55:34,963 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:55:35] 2025-11-25 02:55:34,965 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:55:35]  *** Error codes and diagnostics ***
[2025-11-25 03:55:35]     "exeErrorCode": 0,
[2025-11-25 03:55:35]     "exeErrorDiag": "",
[2025-11-25 03:55:35]     "pilotErrorCode": 0,
[2025-11-25 03:55:35]     "pilotErrorDiag": "",
[2025-11-25 03:55:35]  *** Listing of results directory ***
[2025-11-25 03:55:35] total 1320328
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc    576529 Nov 21 10:27 pilot3.tar.gz
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc      5112 Nov 21 10:34 queuedata.json
[2025-11-25 03:55:35] -rwx------ 1 boinc boinc     36292 Nov 21 10:35 runpilot2-wrapper.sh
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc       100 Nov 24 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:55:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 19:43 run_atlas
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc       105 Nov 24 19:43 job.xml
[2025-11-25 03:55:35] -rw-r--r-- 2 boinc boinc 409110412 Nov 24 19:43 EVNT.47493127._002352.pool.root.1
[2025-11-25 03:55:35] -rw-r--r-- 2 boinc boinc    590106 Nov 24 19:43 input.tar.gz
[2025-11-25 03:55:35] -rw-r--r-- 2 boinc boinc     15847 Nov 24 19:43 start_atlas.sh
[2025-11-25 03:55:35] drwxrwx--x 2 boinc boinc      4096 Nov 24 19:43 shared
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc         0 Nov 24 19:43 boinc_setup_complete
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc      6446 Nov 24 19:43 init_data.xml
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc         0 Nov 24 19:43 boinc_lockfile
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc      2785 Nov 24 19:43 pandaJob.out
[2025-11-25 03:55:35] -rw------- 1 boinc boinc    991801 Nov 24 19:43 agis_schedconf.cvmfs.json
[2025-11-25 03:55:35] drwx------ 5 boinc boinc      4096 Nov 24 19:43 pilot3
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc       531 Nov 25 03:50 boinc_task_state.xml
[2025-11-25 03:55:35] -rw------- 1 boinc boinc 928389101 Nov 25 03:54 HITS.47533967._003232.pool.root.1
[2025-11-25 03:55:35] -rw------- 1 boinc boinc        95 Nov 25 03:54 pilot_heartbeat.json
[2025-11-25 03:55:35] -rw------- 1 boinc boinc      1020 Nov 25 03:54 memory_monitor_summary.json
[2025-11-25 03:55:35] -rw------- 1 boinc boinc   1516227 Nov 25 03:54 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:55:35] -rw------- 1 boinc boinc   1168267 Nov 25 03:54 log.47533967._003232.job.log.tgz.1
[2025-11-25 03:55:35] -rw------- 1 boinc boinc      8560 Nov 25 03:54 heartbeat.json
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc        28 Nov 25 03:55 wrapper_checkpoint.txt
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc      8192 Nov 25 03:55 boinc_mmap_file
[2025-11-25 03:55:35] -rw------- 1 boinc boinc      4751 Nov 25 03:55 pilotlog.txt
[2025-11-25 03:55:35] -rw------- 1 boinc boinc   4138514 Nov 25 03:55 log.47533967._003232.job.log.1
[2025-11-25 03:55:35] -rw------- 1 boinc boinc       353 Nov 25 03:55 output.list
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc       620 Nov 25 03:55 runtime_log
[2025-11-25 03:55:35] -rw------- 1 boinc boinc   5324800 Nov 25 03:55 result.tar.gz
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc      8898 Nov 25 03:55 runtime_log.err
[2025-11-25 03:55:35] -rw------- 1 boinc boinc       665 Nov 25 03:55 06OODmAjcg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhVHKDmFHHOJn.diag
[2025-11-25 03:55:35] -rw-r--r-- 1 boinc boinc      8966 Nov 25 03:55 stderr.txt
[2025-11-25 03:55:35] HITS file was successfully produced:
[2025-11-25 03:55:35] -rw------- 1 boinc boinc 928389101 Nov 25 03:54 shared/HITS.pool.root.1
[2025-11-25 03:55:35]  *** Contents of shared directory: ***
[2025-11-25 03:55:35] total 1311956
[2025-11-25 03:55:35] -rw-r--r-- 2 boinc boinc 409110412 Nov 24 19:43 ATLAS.root_0
[2025-11-25 03:55:35] -rw-r--r-- 2 boinc boinc    590106 Nov 24 19:43 input.tar.gz
[2025-11-25 03:55:35] -rw-r--r-- 2 boinc boinc     15847 Nov 24 19:43 start_atlas.sh
[2025-11-25 03:55:35] -rw------- 1 boinc boinc 928389101 Nov 25 03:54 HITS.pool.root.1
[2025-11-25 03:55:35] -rw------- 1 boinc boinc   5324800 Nov 25 03:55 result.tar.gz
03:55:36 (810142): run_atlas exited; CPU time 86985.935128
03:55:36 (810142): called boinc_finish(0)

</stderr_txt>
]]>

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