Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 13:30:14 (47399): vboxwrapper version 26210
2025-11-23 13:30:14 (47399): BOINC client version: 7.24.1
2025-11-23 13:30:15 (47399): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-11-23 13:30:15 (47399): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 13:30:15 (47399): Create VM. (boinc_ea1afa36038962fd, slot#0)
2025-11-23 13:30:15 (47399): Setting Memory Size for VM. (4800MB)
2025-11-23 13:30:15 (47399): Setting CPU Count for VM. (8)
2025-11-23 13:30:15 (47399): Setting Chipset Options for VM.
2025-11-23 13:30:15 (47399): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 13:30:15 (47399): Setting Boot Options for VM.
2025-11-23 13:30:15 (47399): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 13:30:16 (47399): Enabling VM Network Access.
2025-11-23 13:30:16 (47399): Disabling USB Support for VM.
2025-11-23 13:30:16 (47399): Disabling COM Port Support for VM.
2025-11-23 13:30:16 (47399): Disabling LPT Port Support for VM.
2025-11-23 13:30:16 (47399): Disabling Audio Support for VM.
2025-11-23 13:30:16 (47399): Disabling Clipboard Support for VM.
2025-11-23 13:30:16 (47399): Disabling Drag and Drop Support for VM.
2025-11-23 13:30:16 (47399): Adding storage controller(s) to VM.
2025-11-23 13:30:16 (47399): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 13:30:17 (47399): Adding VirtualBox Guest Additions to VM.
2025-11-23 13:30:17 (47399): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 13:30:17 (47399): forwarding host port 53157 to guest port 80
2025-11-23 13:30:17 (47399): Enabling remote desktop for VM.
2025-11-23 13:30:17 (47399): Enabling shared directory for VM.
2025-11-23 13:30:17 (47399): Starting VM using VBoxManage interface. (boinc_ea1afa36038962fd, slot#0)
2025-11-23 13:30:18 (47399): Successfully started VM. (PID = '47909')
2025-11-23 13:30:18 (47399): Reporting VM Process ID to BOINC.
2025-11-23 13:30:18 (47399): Guest Log: BIOS: VirtualBox 7.0.16
2025-11-23 13:30:18 (47399): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 13:30:18 (47399): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 13:30:18 (47399): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 13:30:18 (47399): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 13:30:18 (47399): Detected: Web Application Enabled (http://localhost:53157)
2025-11-23 13:30:18 (47399): Detected: Remote Desktop Enabled (localhost:43489)
2025-11-23 13:30:18 (47399): Preference change detected
2025-11-23 13:30:18 (47399): Setting CPU throttle for VM. (100%)
2025-11-23 13:30:18 (47399): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 13:30:20 (47399): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 13:30:20 (47399): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 13:30:22 (47399): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 13:30:22 (47399): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 13:30:22 (47399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 13:30:27 (47399): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 13:30:27 (47399): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 13:30:31 (47399): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000088 main     Log opened 2025-11-23T11:30:29.025148000Z
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000171 main     OS Product: Linux
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000198 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000217 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000258 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000258 main     Process ID: 1368
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000259 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 13:30:31 (47399): Guest Log: 00:00:00.000725 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 13:30:31 (47399): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 13:30:31 (47399): Guest Log: [INFO] Mounting shared directory
2025-11-23 13:30:31 (47399): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 13:30:53 (47399): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 13:30:53 (47399): Guest Log: [INFO] Detected branch: prod
2025-11-23 13:30:53 (47399): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 13:30:53 (47399): Guest Log: Copying input files
2025-11-23 13:30:55 (47399): Guest Log: Copied input files into RunAtlas.
2025-11-23 13:30:55 (47399): Guest Log: Detected user-configured HTTP proxy at http://proxy.kippola.kiulu10clients.net:3128 - will set in /etc/cvmfs/default.local
2025-11-23 13:31:04 (47399): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 13:31:05 (47399): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 13:31:05 (47399): Guest Log: 2.6.3.0 1647 0 31636 153207 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2025-11-23 13:31:05 (47399): Guest Log: copied the webapp to /var/www
2025-11-23 13:31:05 (47399): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-23 13:31:05 (47399): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-23 13:31:05 (47399): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 13:31:05 (47399): Guest Log:  *** Starting ATLAS job. (PandaID=6894281574 taskID=47533967) ***
2025-11-23 13:41:57 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 13:42:17 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 13:55:50 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 13:56:10 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 14:45:27 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 14:45:47 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 15:10:21 (47399): Status Report: Elapsed Time: '6000.000000'
2025-11-23 15:10:21 (47399): Status Report: CPU Time: '45117.870000'
2025-11-23 15:42:06 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 15:42:26 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 16:02:40 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 16:03:00 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 16:19:12 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 16:19:33 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 16:50:25 (47399): Status Report: Elapsed Time: '12000.000000'
2025-11-23 16:50:25 (47399): Status Report: CPU Time: '92555.290000'
2025-11-23 17:06:39 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 17:06:59 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 18:06:29 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 18:06:48 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 18:28:12 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 18:28:31 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 18:30:29 (47399): Status Report: Elapsed Time: '18000.000000'
2025-11-23 18:30:29 (47399): Status Report: CPU Time: '140119.380000'
2025-11-23 18:46:05 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 18:46:25 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 19:31:30 (47399): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 19:31:49 (47399): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 20:03:27 (47399): Guest Log:  *** Job finished ***
2025-11-23 20:03:27 (47399): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:31,013 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:31,013 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:50,624 | INFO     | [monitor] cgroup control has ended
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:51,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140611806201664)>', '<ExcThread(monitor, started 140611382404864)>']
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:51,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:51,886 | INFO     | [monitor] control thread has ended
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,530 | INFO     | all workflow threads have been joined
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,530 | INFO     | end of generic workflow (traces error code: 0)
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,530 | INFO     | traces error code: 0
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,661 [wrapper] ==== pilot stdout END ====
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,668 [wrapper] ==== wrapper stdout RESUME ====
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,672 [wrapper] pilotpid: 6082
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,678 [wrapper] Pilot exit status: 0
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,696 [wrapper] pandaids: 6894281574
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,739 [wrapper] cleanup supervisor_pilot 30742 6083
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,751 [wrapper] Test setup, not cleaning
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,764 [wrapper] apfmon messages muted
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,771 [wrapper] ==== wrapper stdout END ====
2025-11-23 20:03:27 (47399): Guest Log: 2025-11-23 17:59:56,777 [wrapper] ==== wrapper stderr END ====
2025-11-23 20:03:27 (47399): Guest Log:  *** Error codes and diagnostics ***
2025-11-23 20:03:27 (47399): Guest Log:     "exeErrorCode": 0,
2025-11-23 20:03:27 (47399): Guest Log:     "exeErrorDiag": "",
2025-11-23 20:03:27 (47399): Guest Log:     "pilotErrorCode": 0,
2025-11-23 20:03:27 (47399): Guest Log:     "pilotErrorDiag": "",
2025-11-23 20:03:27 (47399): Guest Log:  *** Listing of results directory ***
2025-11-23 20:03:27 (47399): Guest Log: total 899604
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 09:12 pilot3.tar.gz
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 09:16 queuedata.json
2025-11-23 20:03:27 (47399): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 09:17 runpilot2-wrapper.sh
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas      6962 Nov 23 11:30 init_data.xml
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 23 11:30 start_atlas.sh
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas    590107 Nov 23 11:30 input.tar.gz
2025-11-23 20:03:27 (47399): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 11:30 EVNT.47493127._002344.pool.root.1 -> /data/./ATLAS.root_0
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 23 11:31 pandaJob.out
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas        69 Nov 23 11:31 setup.sh.local
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas    989784 Nov 23 11:31 agis_schedconf.cvmfs.json
2025-11-23 20:03:27 (47399): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 11:31 pilot3
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas 907772431 Nov 23 17:58 HITS.47533967._003158.pool.root.1
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 23 17:58 memory_monitor_summary.json
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 23 17:58 agis_ddmendpoints.agis.ALL.json
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas   1687566 Nov 23 17:58 log.47533967._003158.job.log.tgz.1
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas      8663 Nov 23 17:58 heartbeat.json
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas        95 Nov 23 17:59 pilot_heartbeat.json
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 23 17:59 pilotlog.txt
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas   3094098 Nov 23 17:59 log.47533967._003158.job.log.1
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas       353 Nov 23 17:59 output.list
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 23 17:59 runtime_log
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas   4802560 Nov 23 17:59 result.tar.gz
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas       652 Nov 23 17:59 yIIODmDScg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpUHKDmCCor0n.diag
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 atlas atlas      9307 Nov 23 17:59 runtime_log.err
2025-11-23 20:03:27 (47399): Guest Log: Looking for outputfile HITS.47533967._003158.pool.root.1
2025-11-23 20:03:27 (47399): Guest Log: HITS file was successfully produced
2025-11-23 20:03:27 (47399): Guest Log: -rw-------. 1 atlas atlas 907772431 Nov 23 17:58 /home/atlas/RunAtlas/HITS.47533967._003158.pool.root.1
2025-11-23 20:03:27 (47399): Guest Log: Successfully finished the ATLAS job!
2025-11-23 20:03:27 (47399): Guest Log: Copying the results back to the shared directory!
2025-11-23 20:03:27 (47399): Guest Log:  *** Contents of shared directory: ***
2025-11-23 20:03:27 (47399): Guest Log: total 400415
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 root root 409170919 Nov 23 11:30 ATLAS.root_0
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 root root      6962 Nov 23 11:30 init_data.xml
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 root root    590107 Nov 23 11:30 input.tar.gz
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 root root   4802560 Nov 23  2025 result.tar.gz
2025-11-23 20:03:27 (47399): Guest Log: -rw-r--r--. 1 root root     15847 Nov 23 11:30 start_atlas.sh
2025-11-23 20:03:27 (47399): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-23 20:03:27 (47399): VM Completion File Detected.
2025-11-23 20:03:27 (47399): Powering off VM.
2025-11-23 20:03:28 (47399): Successfully stopped VM.
2025-11-23 20:03:28 (47399): Deregistering VM. (boinc_ea1afa36038962fd, slot#0)
2025-11-23 20:03:28 (47399): Removing network bandwidth throttle group from VM.
2025-11-23 20:03:28 (47399): Removing VM from VirtualBox.
2025-11-23 20:03:33 (47399): called boinc_finish(0)

</stderr_txt>
]]>

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