Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:21 (3677954): wrapper (7.7.26015): starting
00:51:21 (3677954): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 00:51:21] Arguments: --nthreads 4
[2025-11-27 00:51:21] Threads: 4
[2025-11-27 00:51:21] Checking for CVMFS
[2025-11-27 00:51:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:51:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:51:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:51:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:51:21] 2.9.2.0 3608684 370 58184 153340 1 81 34503775 36864001 0 130560 0 155601 99.984 13222 12450 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 00:51:21] CVMFS is ok
[2025-11-27 00:51:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:51:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:51:21] Further information can be found at the LHC@home message board.
[2025-11-27 00:51:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:51:21] Checking for apptainer binary...
[2025-11-27 00:51:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:51:21] Running /usr/bin/apptainer --version
[2025-11-27 00:51:21] apptainer version 1.4.1-1.1
[2025-11-27 00:51:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:51:21] thA350
[2025-11-27 00:51:21] apptainer works
[2025-11-27 00:51:21] Set ATHENA_PROC_NUMBER=4
[2025-11-27 00:51:21] Set ATHENA_CORE_NUMBER=4
[2025-11-27 00:51:21] Starting ATLAS job with PandaID=6893935606
[2025-11-27 00:51:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:26:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:26:42] 2025-11-27 02:26:01,973 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 03:26:42] 2025-11-27 02:26:02,425 | INFO     | time since job start (9275s) is within the limit (172800.0s)
[2025-11-27 03:26:42] 2025-11-27 02:26:03,889 | WARNING  | process 3688328 can no longer be monitored (due to stat problems) - aborting
[2025-11-27 03:26:42] 2025-11-27 02:26:03,889 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893935606/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:26:42] 2025-11-27 02:26:03,979 | INFO     | number of running child processes to parent process 3688328: 1
[2025-11-27 03:26:42] 2025-11-27 02:26:03,979 | INFO     | maximum number of monitored processes: 6
[2025-11-27 03:26:42] 2025-11-27 02:26:04,431 | INFO     | time since job start (9277s) is within the limit (172800.0s)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,561 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:26:42] 2025-11-27 02:26:04,562 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3553.6636875000004
[2025-11-27 03:26:42] 2025-11-27 02:26:04,564 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893935606/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,564 | INFO     | extracted standard info from prmon json
[2025-11-27 03:26:42] 2025-11-27 02:26:04,564 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:26:42] 2025-11-27 02:26:04,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:26:42] 2025-11-27 02:26:04,564 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 03:26:42] 2025-11-27 02:26:04,564 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 03:26:42] 2025-11-27 02:26:04,565 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:26:42] 2025-11-27 02:26:04,565 | INFO     | sum of square deviations: 1088905998.0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | sum of deviations: -7919558202.999998
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | mean x: 1764205713.5
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | mean y: 2450886.1315789474
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | intersect: 12833429736.271395
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | chi2: 1.7918040789718837
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | sum of square deviations: 984941258.0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | sum of deviations: -7415358676.999998
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | mean x: 1764205561.0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | mean y: 2451626.0204081633
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | intersect: 13284682326.09024
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | chi2: 1.7906596456496164
[2025-11-27 03:26:42] 2025-11-27 02:26:04,566 | INFO     | current chi2=1.7906596456496164 (change=0.06387044966009206 %)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | right removable region: 146
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | sum of square deviations: 984941258.0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | sum of deviations: -29140065634.0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | mean x: 1764205866.0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | mean y: 2481459.7959183673
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | intersect: 52197548231.10566
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | chi2: 0.2669605879149431
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | current chi2=0.2669605879149431 (change=85.10101684397762 %)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,567 | INFO     | sum of square deviations: 887813855.5
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | sum of deviations: -22527122734.000008
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | mean x: 1764206018.5
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | mean y: 2471060.915492958
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | intersect: 44766905925.95684
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | chi2: 0.2447761485709727
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | current chi2=0.2447761485709727 (change=8.310005427107695 %)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | left removable region: 20
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | sum of square deviations: 620244187.5
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | sum of deviations: -6747359053.5
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | mean x: 1764206140.5
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | mean y: 2444779.5634920634
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | intersect: 19194454175.609573
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | chi2: 0.11673342498246571
[2025-11-27 03:26:42] 2025-11-27 02:26:04,568 | INFO     | current memory leak: -10.88 B/s (using 126 data points, chi2=0.12)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | could have reported an average CPU frequency of 3921 MHz (9 samples)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | ..............................
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . Timing measurements:
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . get job = 0 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . initial setup = 1 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . payload setup = 3 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . stage-in = 0 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . payload execution = 9250 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . stage-out = 0 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | . log creation = 0 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,569 | INFO     | ..............................
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | 
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | job summary report
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | --------------------------------------------------
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | PanDA job id: 6893935606
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | task id: 47523634
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | errors: (none)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | pilot state: finished 
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | transexitcode: 0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | exeerrorcode: 0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | exeerrordiag: 
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | exitcode: 0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | exitmsg: OK
[2025-11-27 03:26:42] 2025-11-27 02:26:04,897 | INFO     | cpuconsumptiontime: 35914 s
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | nevents: 400
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | neventsw: 0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | pid: 3688328
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | pgrp: 3688328
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | corecount: 4
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | event service: False
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | sizes: {0: 2283973, 3: 2284235, 11: 2284263, 9258: 2321803, 9261: 2321803, 9264: 2322061}
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | --------------------------------------------------
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | 
[2025-11-27 03:26:42] 2025-11-27 02:26:04,898 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 03:26:42] 2025-11-27 02:26:04,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,913 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | job 6893935606 has completed (purged errors)
[2025-11-27 03:26:42] 2025-11-27 02:26:04,914 | INFO     | overall cleanup function is called
[2025-11-27 03:26:42] 2025-11-27 02:26:05,523 | INFO     | PID=3681745 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:26:42] 2025-11-27 02:26:05,921 | INFO     | --- collectZombieJob: --- 10, [3688328]
[2025-11-27 03:26:42] 2025-11-27 02:26:05,921 | INFO     | zombie collector waiting for pid 3688328
[2025-11-27 03:26:42] 2025-11-27 02:26:05,921 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:26:42] 2025-11-27 02:26:05,921 | INFO     | collected zombie processes
[2025-11-27 03:26:42] 2025-11-27 02:26:05,921 | INFO     | will attempt to kill all subprocesses of pid=3688328
[2025-11-27 03:26:42] 2025-11-27 02:26:05,985 | INFO     | process IDs to be killed: [3688328] (in reverse order)
[2025-11-27 03:26:42] 2025-11-27 02:26:06,018 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:26:42] 2025-11-27 02:26:06,019 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:26:42] 2025-11-27 02:26:06,021 | INFO     | did not find any defunct processes belonging to 3688328
[2025-11-27 03:26:42] 2025-11-27 02:26:06,023 | INFO     | did not find any defunct processes belonging to 3688328
[2025-11-27 03:26:42] 2025-11-27 02:26:06,023 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:26:42] 2025-11-27 02:26:06,023 | INFO     | ready for new job
[2025-11-27 03:26:42] 2025-11-27 02:26:06,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:26:42] 2025-11-27 02:26:06,024 | INFO     | ***************************************
[2025-11-27 03:26:42] 2025-11-27 02:26:06,024 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:26:42] 2025-11-27 02:26:06,024 | INFO     | ***************************************
[2025-11-27 03:26:42] 2025-11-27 02:26:06,024 | INFO     | 
[2025-11-27 03:26:42] 2025-11-27 02:26:06,025 | INFO     | architecture information:
[2025-11-27 03:26:42] 2025-11-27 02:26:06,025 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:26:42] 2025-11-27 02:26:06,035 | INFO     | cat /etc/os-release:
[2025-11-27 03:26:42] NAME="CentOS Linux"
[2025-11-27 03:26:42] VERSION="7 (Core)"
[2025-11-27 03:26:42] ID="centos"
[2025-11-27 03:26:42] ID_LIKE="rhel fedora"
[2025-11-27 03:26:42] VERSION_ID="7"
[2025-11-27 03:26:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:26:42] ANSI_COLOR="0;31"
[2025-11-27 03:26:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:26:42] HOME_URL="https://www.centos.org/"
[2025-11-27 03:26:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:26:42] 
[2025-11-27 03:26:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:26:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:26:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:26:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:26:42] 
[2025-11-27 03:26:42] 2025-11-27 02:26:06,035 | INFO     | ***************************************
[2025-11-27 03:26:42] 2025-11-27 02:26:06,537 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 03:26:42] 2025-11-27 02:26:06,551 | INFO     | sufficient remaining disk space (366173224960 B)
[2025-11-27 03:26:42] 2025-11-27 02:26:06,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:26:42] 2025-11-27 02:26:06,551 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:26:42] 2025-11-27 02:26:06,552 | INFO     | update_server=False
[2025-11-27 03:26:42] 2025-11-27 02:26:06,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:26:42] 2025-11-27 02:26:06,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:26:42] 2025-11-27 02:26:06,706 | INFO     | all data control threads have been joined
[2025-11-27 03:26:42] 2025-11-27 02:26:07,251 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:26:42] 2025-11-27 02:26:07,310 | INFO     | all payload control threads have been joined
[2025-11-27 03:26:42] 2025-11-27 02:26:07,416 | INFO     | all job control threads have been joined
[2025-11-27 03:26:42] 2025-11-27 02:26:07,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:26:42] 2025-11-27 02:26:07,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:26:42] 2025-11-27 02:26:07,488 | INFO     | aborting loop
[2025-11-27 03:26:42] 2025-11-27 02:26:07,553 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:07,557 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:07,581 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:07,702 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:07,712 | INFO     | [data] control thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,316 | INFO     | [payload] control thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,422 | INFO     | [job] control thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,435 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,494 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,757 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,836 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,919 | INFO     | [job] validate thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:08,979 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:09,257 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:11,426 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:16,832 | INFO     | job.realtimelogging is not enabled
[2025-11-27 03:26:42] 2025-11-27 02:26:17,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:26:42] 2025-11-27 02:26:37,492 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:26:42] 2025-11-27 02:26:37,669 | INFO     | PID=3681745 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:26:42] 2025-11-27 02:26:37,669 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:26:42] 2025-11-27 02:26:37,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:26:42] 2025-11-27 02:26:37,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:26:42] 2025-11-27 02:26:37,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139109009216)>', '<ExcThread(monitor, started 140138332022528)>']
[2025-11-27 03:26:42] 2025-11-27 02:26:38,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:26:42] 2025-11-27 02:26:38,675 | INFO     | [monitor] control thread has ended
[2025-11-27 03:26:42] 2025-11-27 02:26:42,757 | INFO     | all workflow threads have been joined
[2025-11-27 03:26:42] 2025-11-27 02:26:42,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:26:42] 2025-11-27 02:26:42,758 | INFO     | traces error code: 0
[2025-11-27 03:26:42] 2025-11-27 02:26:42,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:26:42] 2025-11-27 02:26:42,807 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:26:42] 2025-11-27 02:26:42,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:26:42] 2025-11-27 02:26:42,812 [wrapper] pilotpid: 3681745
[2025-11-27 03:26:42] 2025-11-27 02:26:42,814 [wrapper] Pilot exit status: 0
[2025-11-27 03:26:42] 2025-11-27 02:26:42,822 [wrapper] pandaids: 6893935606
[2025-11-27 03:26:42] 2025-11-27 02:26:42,844 [wrapper] cleanup supervisor_pilot 3709289 3681746
[2025-11-27 03:26:42] 2025-11-27 02:26:42,847 [wrapper] Test setup, not cleaning
[2025-11-27 03:26:42] 2025-11-27 02:26:42,850 [wrapper] apfmon messages muted
[2025-11-27 03:26:42] 2025-11-27 02:26:42,852 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:26:42] 2025-11-27 02:26:42,855 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:26:42]  *** Error codes and diagnostics ***
[2025-11-27 03:26:42]     "exeErrorCode": 0,
[2025-11-27 03:26:42]     "exeErrorDiag": "",
[2025-11-27 03:26:42]     "pilotErrorCode": 0,
[2025-11-27 03:26:42]     "pilotErrorDiag": "",
[2025-11-27 03:26:42]  *** Listing of results directory ***
[2025-11-27 03:26:42] total 626696
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc    576529 Nov 21 10:27 pilot3.tar.gz
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc      5112 Nov 21 10:36 queuedata.json
[2025-11-27 03:26:42] -rwx------ 1 boinc boinc     36292 Nov 21 10:36 runpilot2-wrapper.sh
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc       100 Nov 27 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:26:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 00:51 run_atlas
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc       105 Nov 27 00:51 job.xml
[2025-11-27 03:26:42] -rw-r--r-- 2 boinc boinc 301644512 Nov 27 00:51 EVNT.47523632._000005.pool.root.1
[2025-11-27 03:26:42] -rw-r--r-- 2 boinc boinc    589958 Nov 27 00:51 input.tar.gz
[2025-11-27 03:26:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 00:51 start_atlas.sh
[2025-11-27 03:26:42] drwxrwx--x 2 boinc boinc      4096 Nov 27 00:51 shared
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc         0 Nov 27 00:51 boinc_setup_complete
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc      6448 Nov 27 00:51 init_data.xml
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc         0 Nov 27 00:51 boinc_lockfile
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc      2631 Nov 27 00:51 pandaJob.out
[2025-11-27 03:26:42] -rw------- 1 boinc boinc    991538 Nov 27 00:51 agis_schedconf.cvmfs.json
[2025-11-27 03:26:42] -rw------- 1 boinc boinc   1516240 Nov 27 00:51 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:26:42] drwx------ 5 boinc boinc      4096 Nov 27 00:51 pilot3
[2025-11-27 03:26:42] -rw------- 1 boinc boinc 332857268 Nov 27 03:25 HITS.47523634._000116.pool.root.1
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc       529 Nov 27 03:25 boinc_task_state.xml
[2025-11-27 03:26:42] -rw------- 1 boinc boinc      1016 Nov 27 03:25 memory_monitor_summary.json
[2025-11-27 03:26:42] -rw------- 1 boinc boinc    337128 Nov 27 03:25 log.47523634._000116.job.log.tgz.1
[2025-11-27 03:26:42] -rw------- 1 boinc boinc      7736 Nov 27 03:26 heartbeat.json
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc        27 Nov 27 03:26 wrapper_checkpoint.txt
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc      8192 Nov 27 03:26 boinc_mmap_file
[2025-11-27 03:26:42] -rw------- 1 boinc boinc        95 Nov 27 03:26 pilot_heartbeat.json
[2025-11-27 03:26:42] -rw------- 1 boinc boinc      4824 Nov 27 03:26 pilotlog.txt
[2025-11-27 03:26:42] -rw------- 1 boinc boinc   1323523 Nov 27 03:26 log.47523634._000116.job.log.1
[2025-11-27 03:26:42] -rw------- 1 boinc boinc       357 Nov 27 03:26 output.list
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc       620 Nov 27 03:26 runtime_log
[2025-11-27 03:26:42] -rw------- 1 boinc boinc   1679360 Nov 27 03:26 result.tar.gz
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc      8897 Nov 27 03:26 runtime_log.err
[2025-11-27 03:26:42] -rw------- 1 boinc boinc       660 Nov 27 03:26 okmKDmVkcg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlVHKDm1jkLwn.diag
[2025-11-27 03:26:42] -rw-r--r-- 1 boinc boinc     21583 Nov 27 03:26 stderr.txt
[2025-11-27 03:26:42] HITS file was successfully produced:
[2025-11-27 03:26:42] -rw------- 1 boinc boinc 332857268 Nov 27 03:25 shared/HITS.pool.root.1
[2025-11-27 03:26:42]  *** Contents of shared directory: ***
[2025-11-27 03:26:42] total 621876
[2025-11-27 03:26:42] -rw-r--r-- 2 boinc boinc 301644512 Nov 27 00:51 ATLAS.root_0
[2025-11-27 03:26:42] -rw-r--r-- 2 boinc boinc    589958 Nov 27 00:51 input.tar.gz
[2025-11-27 03:26:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 00:51 start_atlas.sh
[2025-11-27 03:26:42] -rw------- 1 boinc boinc 332857268 Nov 27 03:25 HITS.pool.root.1
[2025-11-27 03:26:42] -rw------- 1 boinc boinc   1679360 Nov 27 03:26 result.tar.gz
03:26:44 (3677954): run_atlas exited; CPU time 35973.327259
03:26:44 (3677954): called boinc_finish(0)

</stderr_txt>
]]>

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