Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:16:52 (2523050): wrapper (7.7.26015): starting
21:16:52 (2523050): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 21:16:52] Arguments: --nthreads 4
[2025-11-27 21:16:52] Threads: 4
[2025-11-27 21:16:52] Checking for CVMFS
[2025-11-27 21:16:52] No cvmfs_config command found, will try listing directly
[2025-11-27 21:16:52] CVMFS is ok
[2025-11-27 21:16:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 21:16:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 21:16:52] Further information can be found at the LHC@home message board.
[2025-11-27 21:16:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:16:52] Checking for apptainer binary...
[2025-11-27 21:16:52] which: no apptainer in ((null))
[2025-11-27 21:16:52] apptainer is not installed, using version from CVMFS
[2025-11-27 21:16:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:16:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-27 21:16:52] apptainer works
[2025-11-27 21:16:52] Set ATHENA_PROC_NUMBER=4
[2025-11-27 21:16:52] Set ATHENA_CORE_NUMBER=4
[2025-11-27 21:16:52] Starting ATLAS job with PandaID=6894281572
[2025-11-27 21:16:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:54:07 (2766764): wrapper (7.7.26015): starting
23:54:07 (2766764): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 23:54:07] Arguments: --nthreads 4
[2025-11-27 23:54:07] Threads: 4
[2025-11-27 23:54:07] This job has been restarted, cleaning up previous attempt
[2025-11-27 23:54:08] Checking for CVMFS
[2025-11-27 23:54:08] No cvmfs_config command found, will try listing directly
[2025-11-27 23:54:08] CVMFS is ok
[2025-11-27 23:54:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 23:54:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 23:54:08] Further information can be found at the LHC@home message board.
[2025-11-27 23:54:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:54:08] Checking for apptainer binary...
[2025-11-27 23:54:08] which: no apptainer in ((null))
[2025-11-27 23:54:08] apptainer is not installed, using version from CVMFS
[2025-11-27 23:54:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:54:08] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-27 23:54:08] apptainer works
[2025-11-27 23:54:08] Set ATHENA_PROC_NUMBER=4
[2025-11-27 23:54:08] Set ATHENA_CORE_NUMBER=4
[2025-11-27 23:54:08] Starting ATLAS job with PandaID=6894281572
[2025-11-27 23:54:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 15:35:39]  *** The last 200 lines of the pilot log: ***
[2025-11-28 15:35:39] 2025-11-28 14:28:55,531 | INFO     | time since job start (56073s) is within the limit (172800.0s)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,149 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 15:35:39] 2025-11-28 14:28:57,168 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2625.5790078125005
[2025-11-28 15:35:39] 2025-11-28 14:28:57,195 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6894281572/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,196 | INFO     | extracted standard info from prmon json
[2025-11-28 15:35:39] 2025-11-28 14:28:57,196 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 15:35:39] 2025-11-28 14:28:57,196 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 15:35:39] 2025-11-28 14:28:57,212 | INFO     | fitting pss+swap vs Time
[2025-11-28 15:35:39] 2025-11-28 14:28:57,213 | INFO     | sum of square deviations: 240671587220.9727
[2025-11-28 15:35:39] 2025-11-28 14:28:57,234 | INFO     | sum of deviations: 620085590679.9293
[2025-11-28 15:35:39] 2025-11-28 14:28:57,234 | INFO     | mean x: 1764312094.0054407
[2025-11-28 15:35:39] 2025-11-28 14:28:57,235 | INFO     | mean y: 2281450.0141458106
[2025-11-28 15:35:39] 2025-11-28 14:28:57,235 | INFO     | intersect: -4543433811.133934
[2025-11-28 15:35:39] 2025-11-28 14:28:57,236 | INFO     | chi2: 4.289493861265665
[2025-11-28 15:35:39] 2025-11-28 14:28:57,237 | INFO     | sum of square deviations: 236764659678.47275
[2025-11-28 15:35:39] 2025-11-28 14:28:57,257 | INFO     | sum of deviations: 817670271822.5607
[2025-11-28 15:35:39] 2025-11-28 14:28:57,257 | INFO     | mean x: 1764311941.5054705
[2025-11-28 15:35:39] 2025-11-28 14:28:57,258 | INFO     | mean y: 2289154.487964989
[2025-11-28 15:35:39] 2025-11-28 14:28:57,258 | INFO     | intersect: -6090788362.864744
[2025-11-28 15:35:39] 2025-11-28 14:28:57,259 | INFO     | chi2: 1.9533953363938725
[2025-11-28 15:35:39] 2025-11-28 14:28:57,259 | INFO     | current chi2=1.9533953363938725 (change=54.46093642811508 %)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,260 | INFO     | sum of square deviations: 232900244560.97244
[2025-11-28 15:35:39] 2025-11-28 14:28:57,280 | INFO     | sum of deviations: 836358366253.0817
[2025-11-28 15:35:39] 2025-11-28 14:28:57,280 | INFO     | mean x: 1764311789.0055006
[2025-11-28 15:35:39] 2025-11-28 14:28:57,281 | INFO     | mean y: 2289889.1837183717
[2025-11-28 15:35:39] 2025-11-28 14:28:57,281 | INFO     | intersect: -6333456679.890348
[2025-11-28 15:35:39] 2025-11-28 14:28:57,282 | INFO     | chi2: 1.8825210135301331
[2025-11-28 15:35:39] 2025-11-28 14:28:57,282 | INFO     | current chi2=1.8825210135301331 (change=3.628263134618679 %)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,282 | INFO     | right removable region: 908
[2025-11-28 15:35:39] 2025-11-28 14:28:57,283 | INFO     | sum of square deviations: 236764656628.4728
[2025-11-28 15:35:39] 2025-11-28 14:28:57,304 | INFO     | sum of deviations: 461938091398.4562
[2025-11-28 15:35:39] 2025-11-28 14:28:57,304 | INFO     | mean x: 1764312246.5054705
[2025-11-28 15:35:39] 2025-11-28 14:28:57,304 | INFO     | mean y: 2287610.2089715535
[2025-11-28 15:35:39] 2025-11-28 14:28:57,304 | INFO     | intersect: -3439961935.7633777
[2025-11-28 15:35:39] 2025-11-28 14:28:57,305 | INFO     | chi2: 2.526392940403868
[2025-11-28 15:35:39] 2025-11-28 14:28:57,305 | INFO     | current chi2=2.526392940403868 (change=41.102772911803946 %)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,306 | INFO     | sum of square deviations: 232900238460.9725
[2025-11-28 15:35:39] 2025-11-28 14:28:57,327 | INFO     | sum of deviations: 436423532155.8917
[2025-11-28 15:35:39] 2025-11-28 14:28:57,328 | INFO     | mean x: 1764312399.0055006
[2025-11-28 15:35:39] 2025-11-28 14:28:57,328 | INFO     | mean y: 2288616.6215621564
[2025-11-28 15:35:39] 2025-11-28 14:28:57,328 | INFO     | intersect: -3303794082.5142045
[2025-11-28 15:35:39] 2025-11-28 14:28:57,329 | INFO     | chi2: 2.511597493880285
[2025-11-28 15:35:39] 2025-11-28 14:28:57,329 | INFO     | current chi2=2.511597493880285 (change=0.5856352068976924 %)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,329 | INFO     | left removable region: 20
[2025-11-28 15:35:39] 2025-11-28 14:28:57,330 | INFO     | sum of square deviations: 217128676077.97195
[2025-11-28 15:35:39] 2025-11-28 14:28:57,349 | INFO     | sum of deviations: 611577729271.2548
[2025-11-28 15:35:39] 2025-11-28 14:28:57,349 | INFO     | mean x: 1764312368.5056307
[2025-11-28 15:35:39] 2025-11-28 14:28:57,349 | INFO     | mean y: 2298784.349099099
[2025-11-28 15:35:39] 2025-11-28 14:28:57,349 | INFO     | intersect: -4967169880.712828
[2025-11-28 15:35:39] 2025-11-28 14:28:57,350 | INFO     | chi2: 0.08336078388144222
[2025-11-28 15:35:39] 2025-11-28 14:28:57,351 | INFO     | current memory leak: 2.82 B/s (using 888 data points, chi2=0.08)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,352 | INFO     | could have reported an average CPU frequency of 2661 MHz (34 samples)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,352 | INFO     | ..............................
[2025-11-28 15:35:39] 2025-11-28 14:28:57,352 | INFO     | . Timing measurements:
[2025-11-28 15:35:39] 2025-11-28 14:28:57,352 | INFO     | . get job = 0 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,352 | INFO     | . initial setup = 1 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,352 | INFO     | . payload setup = 8 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,353 | INFO     | . stage-in = 0 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,353 | INFO     | . payload execution = 56035 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,353 | INFO     | . stage-out = 2 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,353 | INFO     | . log creation = 0 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,353 | INFO     | ..............................
[2025-11-28 15:35:39] 2025-11-28 14:28:57,455 | INFO     | 
[2025-11-28 15:35:39] 2025-11-28 14:28:57,455 | INFO     | job summary report
[2025-11-28 15:35:39] 2025-11-28 14:28:57,455 | INFO     | --------------------------------------------------
[2025-11-28 15:35:39] 2025-11-28 14:28:57,455 | INFO     | PanDA job id: 6894281572
[2025-11-28 15:35:39] 2025-11-28 14:28:57,455 | INFO     | task id: 47533967
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | errors: (none)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | pilot state: finished 
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | transexitcode: 0
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | exeerrorcode: 0
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | exeerrordiag: 
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | exitcode: 0
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | exitmsg: OK
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | cpuconsumptiontime: 221541 s
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | nevents: 1000
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | neventsw: 0
[2025-11-28 15:35:39] 2025-11-28 14:28:57,456 | INFO     | pid: 2778449
[2025-11-28 15:35:39] 2025-11-28 14:28:57,457 | INFO     | pgrp: 2778449
[2025-11-28 15:35:39] 2025-11-28 14:28:57,457 | INFO     | corecount: 4
[2025-11-28 15:35:39] 2025-11-28 14:28:57,457 | INFO     | event service: False
[2025-11-28 15:35:39] 2025-11-28 14:28:57,457 | INFO     | sizes: {0: 2284327, 6: 2284589, 11: 2284617, 56047: 2337605, 56050: 2346623, 56051: 2346679, 56058: 2347053}
[2025-11-28 15:35:39] 2025-11-28 14:28:57,457 | INFO     | --------------------------------------------------
[2025-11-28 15:35:39] 2025-11-28 14:28:57,457 | INFO     | 
[2025-11-28 15:35:39] 2025-11-28 14:28:57,457 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-11-28 15:35:39] 2025-11-28 14:28:57,489 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,491 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 15:35:39] 2025-11-28 14:28:57,492 | INFO     | job 6894281572 has completed (purged errors)
[2025-11-28 15:35:39] 2025-11-28 14:28:57,492 | INFO     | overall cleanup function is called
[2025-11-28 15:35:39] 2025-11-28 14:28:58,508 | INFO     | --- collectZombieJob: --- 10, [2778449]
[2025-11-28 15:35:39] 2025-11-28 14:28:58,508 | INFO     | zombie collector waiting for pid 2778449
[2025-11-28 15:35:39] 2025-11-28 14:28:58,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 15:35:39] 2025-11-28 14:28:58,508 | INFO     | collected zombie processes
[2025-11-28 15:35:39] 2025-11-28 14:28:58,508 | INFO     | will attempt to kill all subprocesses of pid=2778449
[2025-11-28 15:35:39] 2025-11-28 14:28:59,358 | INFO     | process IDs to be killed: [2778449] (in reverse order)
[2025-11-28 15:35:39] 2025-11-28 14:28:59,621 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 15:35:39] 2025-11-28 14:28:59,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 15:35:39] 2025-11-28 14:28:59,658 | INFO     | did not find any defunct processes belonging to 2778449
[2025-11-28 15:35:39] 2025-11-28 14:28:59,689 | INFO     | did not find any defunct processes belonging to 2778449
[2025-11-28 15:35:39] 2025-11-28 14:28:59,690 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 15:35:39] 2025-11-28 14:28:59,690 | INFO     | ready for new job
[2025-11-28 15:35:39] 2025-11-28 14:28:59,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 15:35:39] 2025-11-28 14:28:59,696 | INFO     | ***************************************
[2025-11-28 15:35:39] 2025-11-28 14:28:59,696 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 15:35:39] 2025-11-28 14:28:59,696 | INFO     | ***************************************
[2025-11-28 15:35:39] 2025-11-28 14:28:59,697 | INFO     | 
[2025-11-28 15:35:39] 2025-11-28 14:28:59,705 | INFO     | architecture information:
[2025-11-28 15:35:39] 2025-11-28 14:28:59,706 | INFO     | executing command: cat /etc/os-release
[2025-11-28 15:35:39] 2025-11-28 14:28:59,727 | INFO     | cat /etc/os-release:
[2025-11-28 15:35:39] NAME="CentOS Linux"
[2025-11-28 15:35:39] VERSION="7 (Core)"
[2025-11-28 15:35:39] ID="centos"
[2025-11-28 15:35:39] ID_LIKE="rhel fedora"
[2025-11-28 15:35:39] VERSION_ID="7"
[2025-11-28 15:35:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 15:35:39] ANSI_COLOR="0;31"
[2025-11-28 15:35:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 15:35:39] HOME_URL="https://www.centos.org/"
[2025-11-28 15:35:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 15:35:39] 
[2025-11-28 15:35:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 15:35:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 15:35:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 15:35:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 15:35:39] 
[2025-11-28 15:35:39] 2025-11-28 14:28:59,728 | INFO     | ***************************************
[2025-11-28 15:35:39] 2025-11-28 14:29:00,230 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-11-28 15:35:39] 2025-11-28 14:29:00,251 | INFO     | sufficient remaining disk space (3266506129408 B)
[2025-11-28 15:35:39] 2025-11-28 14:29:00,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 15:35:39] 2025-11-28 14:29:00,252 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 15:35:39] 2025-11-28 14:29:00,252 | INFO     | update_server=False
[2025-11-28 15:35:39] 2025-11-28 14:29:00,252 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 15:35:39] 2025-11-28 14:29:00,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 15:35:39] 2025-11-28 14:29:00,523 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 15:35:39] 2025-11-28 14:29:00,523 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 15:35:39] 2025-11-28 14:29:00,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 15:35:39] 2025-11-28 14:29:00,523 | INFO     | will abort loop
[2025-11-28 15:35:39] 2025-11-28 14:29:00,533 | INFO     | all payload control threads have been joined
[2025-11-28 15:35:39] 2025-11-28 14:29:00,610 | INFO     | all data control threads have been joined
[2025-11-28 15:35:39] 2025-11-28 14:29:00,739 | INFO     | all job control threads have been joined
[2025-11-28 15:35:39] 2025-11-28 14:29:00,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 15:35:39] 2025-11-28 14:29:01,257 | INFO     | [job] retrieve thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,381 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,417 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,528 | INFO     | [job] job monitor thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,538 | INFO     | [payload] control thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,616 | INFO     | [data] control thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,745 | INFO     | [job] control thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,783 | INFO     | [data] copytool_in thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:01,999 | INFO     | [job] validate thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:02,109 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:02,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:02,258 | INFO     | [data] copytool_out thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:02,264 | INFO     | [payload] failed_post thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:02,383 | INFO     | [payload] validate_post thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:02,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 15:35:39] 2025-11-28 14:29:03,470 | INFO     | [job] queue monitor thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:04,958 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 15:35:39] 2025-11-28 14:29:29,588 | INFO     | PID=2771099 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-28 15:35:39] 2025-11-28 14:29:29,588 | INFO     | .. there are 6 such processes running
[2025-11-28 15:35:39] 2025-11-28 14:29:29,588 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 15:35:39] 2025-11-28 14:29:29,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 15:35:39] 2025-11-28 14:29:29,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 15:35:39] 2025-11-28 14:29:53,556 | INFO     | [monitor] cgroup control has ended
[2025-11-28 15:35:39] 2025-11-28 14:29:54,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22727433086784)>', '<ExcThread(monitor, started 22727198996224)>']
[2025-11-28 15:35:39] 2025-11-28 14:29:54,717 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 15:35:39] 2025-11-28 14:29:54,717 | INFO     | [monitor] control thread has ended
[2025-11-28 15:35:39] 2025-11-28 14:29:59,198 | INFO     | all workflow threads have been joined
[2025-11-28 15:35:39] 2025-11-28 14:29:59,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 15:35:39] 2025-11-28 14:29:59,198 | INFO     | traces error code: 0
[2025-11-28 15:35:39] 2025-11-28 14:29:59,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 15:35:39] 2025-11-28 14:29:59,369 [wrapper] ==== pilot stdout END ====
[2025-11-28 15:35:39] 2025-11-28 14:29:59,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 15:35:39] 2025-11-28 14:29:59,377 [wrapper] pilotpid: 2771099
[2025-11-28 15:35:39] 2025-11-28 14:29:59,382 [wrapper] Pilot exit status: 0
[2025-11-28 15:35:39] 2025-11-28 14:29:59,397 [wrapper] pandaids: 6894281572 6894281572
[2025-11-28 15:35:39] 2025-11-28 14:29:59,583 [wrapper] cleanup supervisor_pilot 4147213 2771100
[2025-11-28 15:35:39] 2025-11-28 14:29:59,587 [wrapper] Test setup, not cleaning
[2025-11-28 15:35:39] 2025-11-28 14:29:59,592 [wrapper] apfmon messages muted
[2025-11-28 15:35:39] 2025-11-28 14:29:59,595 [wrapper] ==== wrapper stdout END ====
[2025-11-28 15:35:39] 2025-11-28 14:29:59,599 [wrapper] ==== wrapper stderr END ====
[2025-11-28 15:35:39]  *** Error codes and diagnostics ***
[2025-11-28 15:35:39]     "exeErrorCode": 0,
[2025-11-28 15:35:39]     "exeErrorDiag": "",
[2025-11-28 15:35:39]     "pilotErrorCode": 0,
[2025-11-28 15:35:39]     "pilotErrorDiag": "",
[2025-11-28 15:35:39]  *** Listing of results directory ***
[2025-11-28 15:35:39] total 1720884
[2025-11-28 15:35:39] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc    576529 Nov 21 10:12 pilot3.tar.gz
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc      5112 Nov 21 10:16 queuedata.json
[2025-11-28 15:35:39] -rwx------ 1 boinc boinc     36292 Nov 21 10:17 runpilot2-wrapper.sh
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc       100 Nov 27 21:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 15:35:39] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 21:16 run_atlas
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc       105 Nov 27 21:16 job.xml
[2025-11-28 15:35:39] -rw-r--r-- 3 boinc boinc 409170919 Nov 27 21:16 EVNT.47493127._002344.pool.root.1
[2025-11-28 15:35:39] -rw-r--r-- 3 boinc boinc 409170919 Nov 27 21:16 ATLAS.root_0
[2025-11-28 15:35:39] drwxrwx--x 2 boinc boinc      4096 Nov 27 21:16 shared
[2025-11-28 15:35:39] -rw-r--r-- 2 boinc boinc    590107 Nov 27 21:16 input.tar.gz
[2025-11-28 15:35:39] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:16 start_atlas.sh
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:16 boinc_lockfile
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc      2786 Nov 27 23:54 pandaJob.out
[2025-11-28 15:35:39] -rw------- 1 boinc boinc    991532 Nov 27 23:54 agis_schedconf.cvmfs.json
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc      6695 Nov 28 04:19 init_data.xml
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc       532 Nov 28 15:20 boinc_task_state.xml
[2025-11-28 15:35:39] -rw------- 1 boinc boinc 921132681 Nov 28 15:28 HITS.47533967._003156.pool.root.1
[2025-11-28 15:35:39] -rw------- 1 boinc boinc        97 Nov 28 15:28 pilot_heartbeat.json
[2025-11-28 15:35:39] -rw------- 1 boinc boinc      1042 Nov 28 15:28 memory_monitor_summary.json
[2025-11-28 15:35:39] -rw------- 1 boinc boinc   1516240 Nov 28 15:28 agis_ddmendpoints.agis.ALL.json
[2025-11-28 15:35:39] -rw------- 1 boinc boinc   1666793 Nov 28 15:28 log.47533967._003156.job.log.tgz.1
[2025-11-28 15:35:39] -rw------- 1 boinc boinc      8598 Nov 28 15:28 heartbeat.json
[2025-11-28 15:35:39] -rw------- 1 boinc boinc      5022 Nov 28 15:29 pilotlog.txt
[2025-11-28 15:35:39] -rw------- 1 boinc boinc   7728982 Nov 28 15:29 log.47533967._003156.job.log.1
[2025-11-28 15:35:39] -rw------- 1 boinc boinc       353 Nov 28 15:29 output.list
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc       620 Nov 28 15:29 runtime_log
[2025-11-28 15:35:39] -rw------- 1 boinc boinc   9410560 Nov 28 15:29 result.tar.gz
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc      9300 Nov 28 15:29 runtime_log.err
[2025-11-28 15:35:39] -rw------- 1 boinc boinc       795 Nov 28 15:29 TiFODmDScg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnUHKDm5dOC7m.diag
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc        28 Nov 28 15:35 wrapper_checkpoint.txt
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc      8192 Nov 28 15:35 boinc_mmap_file
[2025-11-28 15:35:39] -rw-r--r-- 1 boinc boinc     23008 Nov 28 15:35 stderr.txt
[2025-11-28 15:35:39] HITS file was successfully produced:
[2025-11-28 15:35:39] -rw------- 1 boinc boinc 921132681 Nov 28 15:28 shared/HITS.pool.root.1
[2025-11-28 15:35:39]  *** Contents of shared directory: ***
[2025-11-28 15:35:39] total 1308924
[2025-11-28 15:35:39] -rw-r--r-- 3 boinc boinc 409170919 Nov 27 21:16 ATLAS.root_0
[2025-11-28 15:35:39] -rw-r--r-- 2 boinc boinc    590107 Nov 27 21:16 input.tar.gz
[2025-11-28 15:35:39] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:16 start_atlas.sh
[2025-11-28 15:35:39] -rw------- 1 boinc boinc 921132681 Nov 28 15:28 HITS.pool.root.1
[2025-11-28 15:35:39] -rw------- 1 boinc boinc   9410560 Nov 28 15:29 result.tar.gz
15:35:40 (2766764): run_atlas exited; CPU time 224404.120683
15:35:40 (2766764): called boinc_finish(0)

</stderr_txt>
]]>

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