Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:57:43 (1127285): wrapper (7.7.26015): starting
21:57:43 (1127285): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 21:57:43] Arguments: --nthreads 3
[2025-11-24 21:57:43] Threads: 3
[2025-11-24 21:57:43] Checking for CVMFS
[2025-11-24 21:57:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:57:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:57:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:57:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:57:43] 2.9.2.0 4159227 8697 89116 153258 0 81 36009478 36864001 0 130560 0 3213201 99.919 471075 6552 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 21:57:43] CVMFS is ok
[2025-11-24 21:57:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 21:57:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 21:57:43] Further information can be found at the LHC@home message board.
[2025-11-24 21:57:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:57:43] Checking for apptainer binary...
[2025-11-24 21:57:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:57:43] Running /usr/bin/apptainer --version
[2025-11-24 21:57:43] apptainer version 1.4.1-1.1
[2025-11-24 21:57:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:57:43] thA349
[2025-11-24 21:57:43] apptainer works
[2025-11-24 21:57:43] Set ATHENA_PROC_NUMBER=3
[2025-11-24 21:57:43] Set ATHENA_CORE_NUMBER=3
[2025-11-24 21:57:43] Starting ATLAS job with PandaID=6894281561
[2025-11-24 21:57:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:11:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:11:31] 2025-11-25 05:10:33,833 | INFO     | process IDs to be killed: [1137456] (in reverse order)
[2025-11-25 06:11:31] 2025-11-25 05:10:33,858 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:11:31] 2025-11-25 05:10:33,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:11:31] 2025-11-25 05:10:33,859 | INFO     | did not find any defunct processes belonging to 1137456
[2025-11-25 06:11:31] 2025-11-25 05:10:33,860 | INFO     | did not find any defunct processes belonging to 1137456
[2025-11-25 06:11:31] 2025-11-25 05:10:33,861 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:11:31] 2025-11-25 05:10:33,861 | INFO     | ready for new job
[2025-11-25 06:11:31] 2025-11-25 05:10:33,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:11:31] 2025-11-25 05:10:33,862 | INFO     | ***************************************
[2025-11-25 06:11:31] 2025-11-25 05:10:33,862 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:11:31] 2025-11-25 05:10:33,862 | INFO     | ***************************************
[2025-11-25 06:11:31] 2025-11-25 05:10:33,862 | INFO     | 
[2025-11-25 06:11:31] 2025-11-25 05:10:33,863 | INFO     | architecture information:
[2025-11-25 06:11:31] 2025-11-25 05:10:33,863 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:11:31] 2025-11-25 05:10:33,871 | INFO     | cat /etc/os-release:
[2025-11-25 06:11:31] NAME="CentOS Linux"
[2025-11-25 06:11:31] VERSION="7 (Core)"
[2025-11-25 06:11:31] ID="centos"
[2025-11-25 06:11:31] ID_LIKE="rhel fedora"
[2025-11-25 06:11:31] VERSION_ID="7"
[2025-11-25 06:11:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:11:31] ANSI_COLOR="0;31"
[2025-11-25 06:11:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:11:31] HOME_URL="https://www.centos.org/"
[2025-11-25 06:11:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:11:31] 
[2025-11-25 06:11:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:11:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:11:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:11:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:11:31] 
[2025-11-25 06:11:31] 2025-11-25 05:10:33,872 | INFO     | ***************************************
[2025-11-25 06:11:31] 2025-11-25 05:10:34,375 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 06:11:31] 2025-11-25 05:10:34,386 | INFO     | sufficient remaining disk space (265596960768 B)
[2025-11-25 06:11:31] 2025-11-25 05:10:34,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:11:31] 2025-11-25 05:10:34,387 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:11:31] 2025-11-25 05:10:34,387 | INFO     | update_server=False
[2025-11-25 06:11:31] 2025-11-25 05:10:34,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:11:31] 2025-11-25 05:10:34,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:11:31] 2025-11-25 05:10:34,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:11:31] 2025-11-25 05:10:34,469 | INFO     | aborting loop
[2025-11-25 06:11:31] 2025-11-25 05:10:34,833 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:11:31] 2025-11-25 05:10:35,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:11:31] 2025-11-25 05:10:35,393 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:35,393 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:35,420 | INFO     | all data control threads have been joined
[2025-11-25 06:11:31] 2025-11-25 05:10:35,474 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:35,561 | INFO     | all payload control threads have been joined
[2025-11-25 06:11:31] 2025-11-25 05:10:35,677 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,003 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,003 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,033 | INFO     | [job] validate thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,066 | INFO     | all job control threads have been joined
[2025-11-25 06:11:31] 2025-11-25 05:10:36,104 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,306 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,425 | INFO     | [data] control thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,565 | INFO     | [payload] control thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,643 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,783 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:36,839 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:37,072 | INFO     | [job] control thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:10:39,081 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:11:31] 2025-11-25 05:11:04,066 | INFO     | PID=1131014 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:11:31] 2025-11-25 05:11:04,066 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:11:31] 2025-11-25 05:11:04,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:11:31] 2025-11-25 05:11:04,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:11:31] 2025-11-25 05:11:24,682 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:11:31] 2025-11-25 05:11:26,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140348677973824)>', '<ExcThread(monitor, started 140348055615232)>']
[2025-11-25 06:11:31] 2025-11-25 05:11:27,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:11:31] 2025-11-25 05:11:27,187 | INFO     | [monitor] control thread has ended
[2025-11-25 06:11:31] 2025-11-25 05:11:31,185 | INFO     | all workflow threads have been joined
[2025-11-25 06:11:31] 2025-11-25 05:11:31,185 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:11:31] 2025-11-25 05:11:31,185 | INFO     | traces error code: 0
[2025-11-25 06:11:31] 2025-11-25 05:11:31,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:11:31] 2025-11-25 05:11:31,278 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:11:31] 2025-11-25 05:11:31,280 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:11:31] 2025-11-25 05:11:31,283 [wrapper] pilotpid: 1131014
[2025-11-25 06:11:31] 2025-11-25 05:11:31,285 [wrapper] Pilot exit status: 0
[2025-11-25 06:11:31] 2025-11-25 05:11:31,293 [wrapper] pandaids: 6894281561
[2025-11-25 06:11:31] 2025-11-25 05:11:31,312 [wrapper] cleanup supervisor_pilot 1186844 1131015
[2025-11-25 06:11:31] 2025-11-25 05:11:31,315 [wrapper] Test setup, not cleaning
[2025-11-25 06:11:31] 2025-11-25 05:11:31,317 [wrapper] apfmon messages muted
[2025-11-25 06:11:31] 2025-11-25 05:11:31,320 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:11:31] 2025-11-25 05:11:31,322 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:11:31]  *** Error codes and diagnostics ***
[2025-11-25 06:11:31]     "exeErrorCode": 0,
[2025-11-25 06:11:31]     "exeErrorDiag": "",
[2025-11-25 06:11:31]     "pilotErrorCode": 0,
[2025-11-25 06:11:31]     "pilotErrorDiag": "",
[2025-11-25 06:11:31]  *** Listing of results directory ***
[2025-11-25 06:11:31] total 1331640
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc    576529 Nov 21 10:12 pilot3.tar.gz
[2025-11-25 06:11:31] -rwx------ 1 boinc boinc     36292 Nov 21 10:14 runpilot2-wrapper.sh
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc      5112 Nov 21 10:14 queuedata.json
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc       100 Nov 24 21:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:11:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 21:57 run_atlas
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc       105 Nov 24 21:57 job.xml
[2025-11-25 06:11:31] -rw-r--r-- 2 boinc boinc 409146247 Nov 24 21:57 EVNT.47493127._002343.pool.root.1
[2025-11-25 06:11:31] -rw-r--r-- 2 boinc boinc    590106 Nov 24 21:57 input.tar.gz
[2025-11-25 06:11:31] -rw-r--r-- 2 boinc boinc     15847 Nov 24 21:57 start_atlas.sh
[2025-11-25 06:11:31] drwxrwx--x 2 boinc boinc      4096 Nov 24 21:57 shared
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc         0 Nov 24 21:57 boinc_setup_complete
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc      6447 Nov 24 21:57 init_data.xml
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc         0 Nov 24 21:57 boinc_lockfile
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc      2786 Nov 24 21:57 pandaJob.out
[2025-11-25 06:11:31] -rw------- 1 boinc boinc    991801 Nov 24 21:57 agis_schedconf.cvmfs.json
[2025-11-25 06:11:31] drwx------ 5 boinc boinc      4096 Nov 24 21:57 pilot3
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc       532 Nov 25 06:07 boinc_task_state.xml
[2025-11-25 06:11:31] -rw------- 1 boinc boinc 939854714 Nov 25 06:10 HITS.47533967._003145.pool.root.1
[2025-11-25 06:11:31] -rw------- 1 boinc boinc        95 Nov 25 06:10 pilot_heartbeat.json
[2025-11-25 06:11:31] -rw------- 1 boinc boinc      1022 Nov 25 06:10 memory_monitor_summary.json
[2025-11-25 06:11:31] -rw------- 1 boinc boinc   1516227 Nov 25 06:10 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:11:31] -rw------- 1 boinc boinc   1180191 Nov 25 06:10 log.47533967._003145.job.log.tgz.1
[2025-11-25 06:11:31] -rw------- 1 boinc boinc      8560 Nov 25 06:10 heartbeat.json
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc      8192 Nov 25 06:11 boinc_mmap_file
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc        28 Nov 25 06:11 wrapper_checkpoint.txt
[2025-11-25 06:11:31] -rw------- 1 boinc boinc      4752 Nov 25 06:11 pilotlog.txt
[2025-11-25 06:11:31] -rw------- 1 boinc boinc   4162025 Nov 25 06:11 log.47533967._003145.job.log.1
[2025-11-25 06:11:31] -rw------- 1 boinc boinc       353 Nov 25 06:11 output.list
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc       620 Nov 25 06:11 runtime_log
[2025-11-25 06:11:31] -rw------- 1 boinc boinc   5365760 Nov 25 06:11 result.tar.gz
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc      8898 Nov 25 06:11 runtime_log.err
[2025-11-25 06:11:31] -rw------- 1 boinc boinc       665 Nov 25 06:11 WW2KDmGPcg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSUHKDm9luFum.diag
[2025-11-25 06:11:31] -rw-r--r-- 1 boinc boinc     10307 Nov 25 06:11 stderr.txt
[2025-11-25 06:11:31] HITS file was successfully produced:
[2025-11-25 06:11:31] -rw------- 1 boinc boinc 939854714 Nov 25 06:10 shared/HITS.pool.root.1
[2025-11-25 06:11:31]  *** Contents of shared directory: ***
[2025-11-25 06:11:31] total 1323232
[2025-11-25 06:11:31] -rw-r--r-- 2 boinc boinc 409146247 Nov 24 21:57 ATLAS.root_0
[2025-11-25 06:11:31] -rw-r--r-- 2 boinc boinc    590106 Nov 24 21:57 input.tar.gz
[2025-11-25 06:11:31] -rw-r--r-- 2 boinc boinc     15847 Nov 24 21:57 start_atlas.sh
[2025-11-25 06:11:31] -rw------- 1 boinc boinc 939854714 Nov 25 06:10 HITS.pool.root.1
[2025-11-25 06:11:31] -rw------- 1 boinc boinc   5365760 Nov 25 06:11 result.tar.gz
06:11:32 (1127285): run_atlas exited; CPU time 87378.411872
06:11:32 (1127285): called boinc_finish(0)

</stderr_txt>
]]>

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