Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:20:55 (990427): wrapper (7.7.26015): starting
23:20:55 (990427): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 23:20:55] Arguments: --nthreads 3
[2025-11-24 23:20:55] Threads: 3
[2025-11-24 23:20:55] Checking for CVMFS
[2025-11-24 23:20:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:20:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:20:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:20:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:20:55] 2.9.2.0 3958803 8877 91844 153261 1 81 33349813 36864001 0 130560 0 3285988 99.917 475568 6687 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 23:20:55] CVMFS is ok
[2025-11-24 23:20:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:20:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:20:55] Further information can be found at the LHC@home message board.
[2025-11-24 23:20:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:20:55] Checking for apptainer binary...
[2025-11-24 23:20:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:20:55] Running /usr/bin/apptainer --version
[2025-11-24 23:20:55] apptainer version 1.4.1-1.1
[2025-11-24 23:20:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:20:55] atlasA223b
[2025-11-24 23:20:55] apptainer works
[2025-11-24 23:20:55] Set ATHENA_PROC_NUMBER=3
[2025-11-24 23:20:55] Set ATHENA_CORE_NUMBER=3
[2025-11-24 23:20:55] Starting ATLAS job with PandaID=6894281025
[2025-11-24 23:20:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:35:15]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:35:15] 2025-11-25 06:34:34,262 | INFO     | process IDs to be killed: [1000609] (in reverse order)
[2025-11-25 07:35:15] 2025-11-25 06:34:34,291 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 07:35:15] 2025-11-25 06:34:34,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 07:35:15] 2025-11-25 06:34:34,293 | INFO     | did not find any defunct processes belonging to 1000609
[2025-11-25 07:35:15] 2025-11-25 06:34:34,295 | INFO     | did not find any defunct processes belonging to 1000609
[2025-11-25 07:35:15] 2025-11-25 06:34:34,295 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:35:15] 2025-11-25 06:34:34,295 | INFO     | ready for new job
[2025-11-25 07:35:15] 2025-11-25 06:34:34,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:35:15] 2025-11-25 06:34:34,296 | INFO     | ***************************************
[2025-11-25 07:35:15] 2025-11-25 06:34:34,297 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:35:15] 2025-11-25 06:34:34,297 | INFO     | ***************************************
[2025-11-25 07:35:15] 2025-11-25 06:34:34,297 | INFO     | 
[2025-11-25 07:35:15] 2025-11-25 06:34:34,297 | INFO     | architecture information:
[2025-11-25 07:35:15] 2025-11-25 06:34:34,297 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:35:15] 2025-11-25 06:34:34,306 | INFO     | cat /etc/os-release:
[2025-11-25 07:35:15] NAME="CentOS Linux"
[2025-11-25 07:35:15] VERSION="7 (Core)"
[2025-11-25 07:35:15] ID="centos"
[2025-11-25 07:35:15] ID_LIKE="rhel fedora"
[2025-11-25 07:35:15] VERSION_ID="7"
[2025-11-25 07:35:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:35:15] ANSI_COLOR="0;31"
[2025-11-25 07:35:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:35:15] HOME_URL="https://www.centos.org/"
[2025-11-25 07:35:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:35:15] 
[2025-11-25 07:35:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:35:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:35:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:35:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:35:15] 
[2025-11-25 07:35:15] 2025-11-25 06:34:34,306 | INFO     | ***************************************
[2025-11-25 07:35:15] 2025-11-25 06:34:34,809 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | INFO     | sufficient remaining disk space (368123576320 B)
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | INFO     | update_server=False
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:35:15] 2025-11-25 06:34:34,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:35:15] 2025-11-25 06:34:34,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:35:15] 2025-11-25 06:34:34,821 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:35:15] 2025-11-25 06:34:34,847 | INFO     | all job control threads have been joined
[2025-11-25 07:35:15] 2025-11-25 06:34:34,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:35:15] 2025-11-25 06:34:34,881 | INFO     | aborting loop
[2025-11-25 07:35:15] 2025-11-25 06:34:35,096 | INFO     | all payload control threads have been joined
[2025-11-25 07:35:15] 2025-11-25 06:34:35,543 | INFO     | all data control threads have been joined
[2025-11-25 07:35:15] 2025-11-25 06:34:35,825 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:35,826 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:35,852 | INFO     | [job] control thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:35,886 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:36,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:35:15] 2025-11-25 06:34:36,101 | INFO     | [payload] control thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:36,539 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:36,548 | INFO     | [data] control thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:36,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:35:15] 2025-11-25 06:34:36,631 | INFO     | [job] validate thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:36,635 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:36,639 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:36,800 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:37,077 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:37,414 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:38,042 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:39,735 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:35:15] 2025-11-25 06:34:40,595 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:45,844 | INFO     | job.realtimelogging is not enabled
[2025-11-25 07:35:15] 2025-11-25 06:34:46,849 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:35:15] 2025-11-25 06:34:47,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835936479040)>', '<ExcThread(monitor, started 139834924455680)>']
[2025-11-25 07:35:15] 2025-11-25 06:34:47,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:35:15] 2025-11-25 06:34:47,886 | INFO     | [monitor] control thread has ended
[2025-11-25 07:35:15] 2025-11-25 06:34:52,342 | INFO     | all workflow threads have been joined
[2025-11-25 07:35:15] 2025-11-25 06:34:52,343 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:35:15] 2025-11-25 06:34:52,343 | INFO     | traces error code: 0
[2025-11-25 07:35:15] 2025-11-25 06:34:52,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:35:15] 2025-11-25 06:34:52,391 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:35:15] 2025-11-25 06:34:52,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:35:15] 2025-11-25 06:34:52,396 [wrapper] pilotpid: 994153
[2025-11-25 07:35:15] 2025-11-25 06:34:52,399 [wrapper] Pilot exit status: 0
[2025-11-25 07:35:15] 2025-11-25 06:34:52,406 [wrapper] pandaids: 6894281025
[2025-11-25 07:35:15] 2025-11-25 06:34:52,427 [wrapper] cleanup supervisor_pilot 1096779 994154
[2025-11-25 07:35:15] 2025-11-25 06:34:52,429 [wrapper] Test setup, not cleaning
[2025-11-25 07:35:15] 2025-11-25 06:34:52,432 [wrapper] apfmon messages muted
[2025-11-25 07:35:15] 2025-11-25 06:34:52,434 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:35:15] 2025-11-25 06:34:52,437 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:35:15]  *** Error codes and diagnostics ***
[2025-11-25 07:35:15]     "exeErrorCode": 0,
[2025-11-25 07:35:15]     "exeErrorDiag": "",
[2025-11-25 07:35:15]     "pilotErrorCode": 0,
[2025-11-25 07:35:15]     "pilotErrorDiag": "",
[2025-11-25 07:35:15]  *** Listing of results directory ***
[2025-11-25 07:35:15] total 1317920
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc    576529 Nov 21 09:27 pilot3.tar.gz
[2025-11-25 07:35:15] -rwx------ 1 boinc boinc     36292 Nov 21 09:59 runpilot2-wrapper.sh
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc      5112 Nov 21 09:59 queuedata.json
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc       100 Nov 24 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:35:15] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 23:20 run_atlas
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc       105 Nov 24 23:20 job.xml
[2025-11-25 07:35:15] -rw-r--r-- 2 boinc boinc 407580686 Nov 24 23:20 EVNT.47493127._002336.pool.root.1
[2025-11-25 07:35:15] -rw-r--r-- 2 boinc boinc    590103 Nov 24 23:20 input.tar.gz
[2025-11-25 07:35:15] -rw-r--r-- 2 boinc boinc     15847 Nov 24 23:20 start_atlas.sh
[2025-11-25 07:35:15] drwxrwx--x 2 boinc boinc      4096 Nov 24 23:20 shared
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc         0 Nov 24 23:20 boinc_setup_complete
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc      6450 Nov 24 23:20 init_data.xml
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc         0 Nov 24 23:20 boinc_lockfile
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc      2786 Nov 24 23:20 pandaJob.out
[2025-11-25 07:35:15] -rw------- 1 boinc boinc    991801 Nov 24 23:21 agis_schedconf.cvmfs.json
[2025-11-25 07:35:15] drwx------ 5 boinc boinc      4096 Nov 24 23:21 pilot3
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc       531 Nov 25 07:30 boinc_task_state.xml
[2025-11-25 07:35:15] -rw------- 1 boinc boinc        95 Nov 25 07:33 pilot_heartbeat.json
[2025-11-25 07:35:15] -rw------- 1 boinc boinc 927381152 Nov 25 07:34 HITS.47533967._003080.pool.root.1
[2025-11-25 07:35:15] -rw------- 1 boinc boinc      1023 Nov 25 07:34 memory_monitor_summary.json
[2025-11-25 07:35:15] -rw------- 1 boinc boinc   1516227 Nov 25 07:34 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:35:15] -rw------- 1 boinc boinc   1178073 Nov 25 07:34 log.47533967._003080.job.log.tgz.1
[2025-11-25 07:35:15] -rw------- 1 boinc boinc      8567 Nov 25 07:34 heartbeat.json
[2025-11-25 07:35:15] -rw------- 1 boinc boinc      4628 Nov 25 07:34 pilotlog.txt
[2025-11-25 07:35:15] -rw------- 1 boinc boinc   4161849 Nov 25 07:34 log.47533967._003080.job.log.1
[2025-11-25 07:35:15] -rw------- 1 boinc boinc       353 Nov 25 07:34 output.list
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc       620 Nov 25 07:34 runtime_log
[2025-11-25 07:35:15] -rw------- 1 boinc boinc   5355520 Nov 25 07:34 result.tar.gz
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc      8918 Nov 25 07:34 runtime_log.err
[2025-11-25 07:35:15] -rw------- 1 boinc boinc       670 Nov 25 07:34 PXzKDm79bg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZEJKDmf3KyNo.diag
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc      8192 Nov 25 07:35 boinc_mmap_file
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc     10323 Nov 25 07:35 stderr.txt
[2025-11-25 07:35:15] -rw-r--r-- 1 boinc boinc        28 Nov 25 07:35 wrapper_checkpoint.txt
[2025-11-25 07:35:15] HITS file was successfully produced:
[2025-11-25 07:35:15] -rw------- 1 boinc boinc 927381152 Nov 25 07:34 shared/HITS.pool.root.1
[2025-11-25 07:35:15]  *** Contents of shared directory: ***
[2025-11-25 07:35:15] total 1309516
[2025-11-25 07:35:15] -rw-r--r-- 2 boinc boinc 407580686 Nov 24 23:20 ATLAS.root_0
[2025-11-25 07:35:15] -rw-r--r-- 2 boinc boinc    590103 Nov 24 23:20 input.tar.gz
[2025-11-25 07:35:15] -rw-r--r-- 2 boinc boinc     15847 Nov 24 23:20 start_atlas.sh
[2025-11-25 07:35:15] -rw------- 1 boinc boinc 927381152 Nov 25 07:34 HITS.pool.root.1
[2025-11-25 07:35:15] -rw------- 1 boinc boinc   5355520 Nov 25 07:34 result.tar.gz
07:35:17 (990427): run_atlas exited; CPU time 87513.860547
07:35:17 (990427): called boinc_finish(0)

</stderr_txt>
]]>

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