Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:13:50 (2460470): wrapper (7.7.26015): starting
22:13:50 (2460470): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 22:13:50] Arguments: --nthreads 9
[2025-11-21 22:13:50] Threads: 9
[2025-11-21 22:13:50] Checking for CVMFS
[2025-11-21 22:13:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:13:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:13:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:13:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:13:52] 2.13.3.0 14328 23713 277588 153156 0 863 29956638 40960001 47127 16776704 0 302471086 99.733 203958275 50342 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 22:13:52] CVMFS is ok
[2025-11-21 22:13:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 22:13:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 22:13:52] Further information can be found at the LHC@home message board.
[2025-11-21 22:13:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:13:52] Checking for apptainer binary...
[2025-11-21 22:13:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 22:13:52] Running /usr/bin/apptainer --version
[2025-11-21 22:13:52] apptainer version 1.4.4-1.el9
[2025-11-21 22:13:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:13:52] c8-16-2.aglt2.org
[2025-11-21 22:13:52] apptainer works
[2025-11-21 22:13:52] Set ATHENA_PROC_NUMBER=9
[2025-11-21 22:13:52] Set ATHENA_CORE_NUMBER=9
[2025-11-21 22:13:52] Starting ATLAS job with PandaID=6893880788
[2025-11-21 22:13:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 10:26:57]  *** The last 200 lines of the pilot log: ***
[2025-11-22 10:26:57] 2025-11-22 15:20:42,690 | INFO     | time since job start (43549s) is within the limit (172800.0s)
[2025-11-22 10:26:57] 2025-11-22 15:20:42,785 | INFO     | monitor loop #2292: job 0:6893880788 is in state 'finished'
[2025-11-22 10:26:57] 2025-11-22 15:20:42,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 10:26:57] 2025-11-22 15:20:44,697 | INFO     | time since job start (43551s) is within the limit (172800.0s)
[2025-11-22 10:26:57] 2025-11-22 15:20:45,303 | INFO     | monitor loop #2293: job 0:6893880788 is in state 'finished'
[2025-11-22 10:26:57] 2025-11-22 15:20:45,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 10:26:57] 2025-11-22 15:20:46,704 | INFO     | time since job start (43553s) is within the limit (172800.0s)
[2025-11-22 10:26:57] 2025-11-22 15:20:47,809 | INFO     | monitor loop #2294: job 0:6893880788 is in state 'finished'
[2025-11-22 10:26:57] 2025-11-22 15:20:47,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 10:26:57] 2025-11-22 15:20:48,711 | INFO     | time since job start (43555s) is within the limit (172800.0s)
[2025-11-22 10:26:57] 2025-11-22 15:20:50,318 | INFO     | monitor loop #2295: job 0:6893880788 is in state 'finished'
[2025-11-22 10:26:57] 2025-11-22 15:20:50,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 10:26:57] 2025-11-22 15:20:50,724 | INFO     | time since job start (43557s) is within the limit (172800.0s)
[2025-11-22 10:26:57] 2025-11-22 15:20:52,745 | INFO     | time since job start (43559s) is within the limit (172800.0s)
[2025-11-22 10:26:57] 2025-11-22 15:20:52,839 | INFO     | monitor loop #2296: job 0:6893880788 is in state 'finished'
[2025-11-22 10:26:57] 2025-11-22 15:20:52,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 10:26:57] 2025-11-22 15:20:54,752 | INFO     | time since job start (43561s) is within the limit (172800.0s)
[2025-11-22 10:26:57] 2025-11-22 15:20:54,960 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 10:26:57] 2025-11-22 15:20:55,005 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3762.3735312500003
[2025-11-22 10:26:57] 2025-11-22 15:20:55,107 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6893880788/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,108 | INFO     | extracted standard info from prmon json
[2025-11-22 10:26:57] 2025-11-22 15:20:55,108 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 10:26:57] 2025-11-22 15:20:55,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 10:26:57] 2025-11-22 15:20:55,129 | INFO     | fitting pss+swap vs Time
[2025-11-22 10:26:57] 2025-11-22 15:20:55,131 | INFO     | sum of square deviations: 111461161208.37982
[2025-11-22 10:26:57] 2025-11-22 15:20:55,144 | INFO     | sum of deviations: 244789453671.11328
[2025-11-22 10:26:57] 2025-11-22 15:20:55,144 | INFO     | mean x: 1763803096.6962025
[2025-11-22 10:26:57] 2025-11-22 15:20:55,144 | INFO     | mean y: 2987161.486638537
[2025-11-22 10:26:57] 2025-11-22 15:20:55,145 | INFO     | intersect: -3870652694.251925
[2025-11-22 10:26:57] 2025-11-22 15:20:55,145 | INFO     | chi2: 22.845090551574035
[2025-11-22 10:26:57] 2025-11-22 15:20:55,147 | INFO     | sum of square deviations: 109126939289.27483
[2025-11-22 10:26:57] 2025-11-22 15:20:55,159 | INFO     | sum of deviations: 501872498068.3369
[2025-11-22 10:26:57] 2025-11-22 15:20:55,160 | INFO     | mean x: 1763802944.2152975
[2025-11-22 10:26:57] 2025-11-22 15:20:55,160 | INFO     | mean y: 3003950.2280453257
[2025-11-22 10:26:57] 2025-11-22 15:20:55,160 | INFO     | intersect: -8108688684.778517
[2025-11-22 10:26:57] 2025-11-22 15:20:55,161 | INFO     | chi2: 19.025022027034883
[2025-11-22 10:26:57] 2025-11-22 15:20:55,161 | INFO     | current chi2=19.025022027034883 (change=16.721616908959675 %)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,161 | INFO     | right removable region: 705
[2025-11-22 10:26:57] 2025-11-22 15:20:55,162 | INFO     | sum of square deviations: 109125769919.27481
[2025-11-22 10:26:57] 2025-11-22 15:20:55,175 | INFO     | sum of deviations: -44715320882.12399
[2025-11-22 10:26:57] 2025-11-22 15:20:55,176 | INFO     | mean x: 1763803249.2152975
[2025-11-22 10:26:57] 2025-11-22 15:20:55,176 | INFO     | mean y: 3006063.474504249
[2025-11-22 10:26:57] 2025-11-22 15:20:55,176 | INFO     | intersect: 725741200.3714799
[2025-11-22 10:26:57] 2025-11-22 15:20:55,177 | INFO     | chi2: 19.0794504610905
[2025-11-22 10:26:57] 2025-11-22 15:20:55,177 | INFO     | current chi2=19.0794504610905 (change=16.4833668834991 %)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,177 | INFO     | left removable region: 10
[2025-11-22 10:26:57] 2025-11-22 15:20:55,178 | INFO     | sum of square deviations: 104104744349.43315
[2025-11-22 10:26:57] 2025-11-22 15:20:55,190 | INFO     | sum of deviations: 151297720260.14697
[2025-11-22 10:26:57] 2025-11-22 15:20:55,190 | INFO     | mean x: 1763803218.752518
[2025-11-22 10:26:57] 2025-11-22 15:20:55,190 | INFO     | mean y: 3034690.058992806
[2025-11-22 10:26:57] 2025-11-22 15:20:55,190 | INFO     | intersect: -2560339416.014765
[2025-11-22 10:26:57] 2025-11-22 15:20:55,191 | INFO     | chi2: 13.444711263451532
[2025-11-22 10:26:57] 2025-11-22 15:20:55,191 | INFO     | current memory leak: 1.45 B/s (using 695 data points, chi2=13.44)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,193 | INFO     | could have reported an average CPU frequency of 3792 MHz (27 samples)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,193 | INFO     | ..............................
[2025-11-22 10:26:57] 2025-11-22 15:20:55,193 | INFO     | . Timing measurements:
[2025-11-22 10:26:57] 2025-11-22 15:20:55,193 | INFO     | . get job = 0 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,193 | INFO     | . initial setup = 3 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,193 | INFO     | . payload setup = 44 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,194 | INFO     | . stage-in = 0 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,194 | INFO     | . payload execution = 43392 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,194 | INFO     | . stage-out = 5 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,194 | INFO     | . log creation = 1 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,194 | INFO     | ..............................
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | 
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | job summary report
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | --------------------------------------------------
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | PanDA job id: 6893880788
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | task id: 47523449
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | errors: (none)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | pilot state: finished 
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | transexitcode: 0
[2025-11-22 10:26:57] 2025-11-22 15:20:55,494 | INFO     | exeerrorcode: 0
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | exeerrordiag: 
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | exitcode: 0
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | exitmsg: OK
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | cpuconsumptiontime: 141775 s
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | nevents: 1000
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | neventsw: 0
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | pid: 2528803
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | pgrp: 2528803
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | corecount: 9
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | event service: False
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | sizes: {0: 2298756, 11: 2298756, 22: 2298784, 33: 2299130, 43: 2299130, 43442: 2343552, 43448: 2352546, 43452: 2352602, 43491: 2352848}
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | --------------------------------------------------
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | 
[2025-11-22 10:26:57] 2025-11-22 15:20:55,495 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-22 10:26:57] 2025-11-22 15:20:55,608 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | job 6893880788 has completed (purged errors)
[2025-11-22 10:26:57] 2025-11-22 15:20:55,609 | INFO     | overall cleanup function is called
[2025-11-22 10:26:57] 2025-11-22 15:20:56,657 | INFO     | --- collectZombieJob: --- 10, [2528803]
[2025-11-22 10:26:57] 2025-11-22 15:20:56,657 | INFO     | zombie collector waiting for pid 2528803
[2025-11-22 10:26:57] 2025-11-22 15:20:56,657 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 10:26:57] 2025-11-22 15:20:56,657 | INFO     | collected zombie processes
[2025-11-22 10:26:57] 2025-11-22 15:20:56,657 | INFO     | will attempt to kill all subprocesses of pid=2528803
[2025-11-22 10:26:57] 2025-11-22 15:20:57,873 | INFO     | process IDs to be killed: [2528803] (in reverse order)
[2025-11-22 10:26:57] 2025-11-22 15:20:58,177 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 10:26:57] 2025-11-22 15:20:58,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 10:26:57] 2025-11-22 15:20:58,260 | INFO     | did not find any defunct processes belonging to 2528803
[2025-11-22 10:26:57] 2025-11-22 15:20:58,343 | INFO     | did not find any defunct processes belonging to 2528803
[2025-11-22 10:26:57] 2025-11-22 15:20:58,355 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 10:26:57] 2025-11-22 15:20:58,356 | INFO     | ready for new job
[2025-11-22 10:26:57] 2025-11-22 15:20:58,356 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 10:26:57] 2025-11-22 15:20:58,358 | INFO     | ***************************************
[2025-11-22 10:26:57] 2025-11-22 15:20:58,358 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 10:26:57] 2025-11-22 15:20:58,358 | INFO     | ***************************************
[2025-11-22 10:26:57] 2025-11-22 15:20:58,358 | INFO     | 
[2025-11-22 10:26:57] 2025-11-22 15:20:58,373 | INFO     | architecture information:
[2025-11-22 10:26:57] 2025-11-22 15:20:58,391 | INFO     | executing command: cat /etc/os-release
[2025-11-22 10:26:57] 2025-11-22 15:20:58,438 | INFO     | cat /etc/os-release:
[2025-11-22 10:26:57] NAME="CentOS Linux"
[2025-11-22 10:26:57] VERSION="7 (Core)"
[2025-11-22 10:26:57] ID="centos"
[2025-11-22 10:26:57] ID_LIKE="rhel fedora"
[2025-11-22 10:26:57] VERSION_ID="7"
[2025-11-22 10:26:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 10:26:57] ANSI_COLOR="0;31"
[2025-11-22 10:26:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 10:26:57] HOME_URL="https://www.centos.org/"
[2025-11-22 10:26:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 10:26:57] 
[2025-11-22 10:26:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 10:26:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 10:26:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 10:26:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 10:26:57] 
[2025-11-22 10:26:57] 2025-11-22 15:20:58,438 | INFO     | ***************************************
[2025-11-22 10:26:57] 2025-11-22 15:20:58,945 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-22 10:26:57] 2025-11-22 15:20:58,991 | INFO     | sufficient remaining disk space (156764209152 B)
[2025-11-22 10:26:57] 2025-11-22 15:20:58,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 10:26:57] 2025-11-22 15:20:58,991 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 10:26:57] 2025-11-22 15:20:58,991 | INFO     | update_server=False
[2025-11-22 10:26:57] 2025-11-22 15:20:58,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 10:26:57] 2025-11-22 15:20:58,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 10:26:57] 2025-11-22 15:20:58,991 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 10:26:57] 2025-11-22 15:20:58,992 | INFO     | aborting loop
[2025-11-22 10:26:57] 2025-11-22 15:20:59,002 | INFO     | all job control threads have been joined
[2025-11-22 10:26:57] 2025-11-22 15:20:59,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 10:26:57] 2025-11-22 15:20:59,997 | INFO     | [job] retrieve thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:20:59,998 | INFO     | [job] job monitor thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:00,009 | INFO     | [job] control thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:00,075 | INFO     | all data control threads have been joined
[2025-11-22 10:26:57] 2025-11-22 15:21:00,306 | INFO     | all payload control threads have been joined
[2025-11-22 10:26:57] 2025-11-22 15:21:00,469 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:00,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 10:26:57] 2025-11-22 15:21:00,534 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:00,535 | INFO     | [job] validate thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:00,535 | INFO     | [data] copytool_in thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:00,971 | INFO     | [payload] failed_post thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:01,001 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:01,071 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:01,081 | INFO     | [data] control thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:01,199 | INFO     | [data] copytool_out thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:01,312 | INFO     | [payload] control thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:01,529 | INFO     | [job] queue monitor thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:01,626 | INFO     | [payload] validate_post thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:02,999 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 10:26:57] 2025-11-22 15:21:12,412 | INFO     | [monitor] cgroup control has ended
[2025-11-22 10:26:57] 2025-11-22 15:21:12,718 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011936585536)>', '<ExcThread(monitor, started 140011664021248)>']
[2025-11-22 10:26:57] 2025-11-22 15:21:17,744 | INFO     | all workflow threads have been joined
[2025-11-22 10:26:57] 2025-11-22 15:21:17,744 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 10:26:57] 2025-11-22 15:21:17,745 | INFO     | traces error code: 0
[2025-11-22 10:26:57] 2025-11-22 15:21:17,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 10:26:57] 2025-11-22 15:21:29,874 | INFO     | PID=2491556 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 10:26:57] 2025-11-22 15:21:29,874 | INFO     | .. there are 46 such processes running
[2025-11-22 10:26:57] 2025-11-22 15:21:29,875 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 10:26:57] 2025-11-22 15:21:29,875 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 10:26:57] 2025-11-22 15:21:29,875 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 10:26:57] 2025-11-22 15:21:29,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 10:26:57] 2025-11-22 15:21:29,875 | INFO     | [monitor] control thread has ended
[2025-11-22 10:26:57] 2025-11-22 15:21:31,322 [wrapper] ==== pilot stdout END ====
[2025-11-22 10:26:57] 2025-11-22 15:21:31,379 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 10:26:57] 2025-11-22 15:21:31,403 [wrapper] pilotpid: 2491556
[2025-11-22 10:26:57] 2025-11-22 15:21:31,413 [wrapper] Pilot exit status: 0
[2025-11-22 10:26:57] 2025-11-22 15:21:31,511 [wrapper] pandaids: 6893880788
[2025-11-22 10:26:57] 2025-11-22 15:21:31,740 [wrapper] cleanup supervisor_pilot  217096 2491557
[2025-11-22 10:26:57] 2025-11-22 15:21:31,770 [wrapper] Test setup, not cleaning
[2025-11-22 10:26:57] 2025-11-22 15:21:31,796 [wrapper] apfmon messages muted
[2025-11-22 10:26:57] 2025-11-22 15:21:31,814 [wrapper] ==== wrapper stdout END ====
[2025-11-22 10:26:57] 2025-11-22 15:21:31,910 [wrapper] ==== wrapper stderr END ====
[2025-11-22 10:26:57]  *** Error codes and diagnostics ***
[2025-11-22 10:26:57]     "exeErrorCode": 0,
[2025-11-22 10:26:57]     "exeErrorDiag": "",
[2025-11-22 10:26:57]     "pilotErrorCode": 0,
[2025-11-22 10:26:57]     "pilotErrorDiag": "",
[2025-11-22 10:26:57]  *** Listing of results directory ***
[2025-11-22 10:26:57] total 1323808
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 14:10 pilot3.tar.gz
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 14:36 queuedata.json
[2025-11-22 10:26:57] -rwx------. 1 boincer umatlas     36292 Nov 20 14:37 runpilot2-wrapper.sh
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas       100 Nov 21 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 10:26:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 22:13 run_atlas
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas       105 Nov 21 22:13 job.xml
[2025-11-22 10:26:57] -rw-r--r--. 2 boincer umatlas 411011301 Nov 21 22:13 EVNT.47493127._000843.pool.root.1
[2025-11-22 10:26:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 22:13 start_atlas.sh
[2025-11-22 10:26:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 22:13 shared
[2025-11-22 10:26:57] -rw-r--r--. 2 boincer umatlas    590100 Nov 21 22:13 input.tar.gz
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas         0 Nov 21 22:13 boinc_lockfile
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 22:13 pandaJob.out
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas        57 Nov 21 22:13 setup.sh.local
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas    989776 Nov 21 22:14 agis_schedconf.cvmfs.json
[2025-11-22 10:26:57] drwx------. 5 boincer umatlas      4096 Nov 21 22:14 pilot3
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas       532 Nov 22 09:58 boinc_task_state.xml
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas 926535170 Nov 22 10:18 HITS.47523449._008423.pool.root.1
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas      7175 Nov 22 10:19 init_data.xml
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas      1079 Nov 22 10:20 memory_monitor_summary.json
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas   1526164 Nov 22 10:20 agis_ddmendpoints.agis.ALL.json
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas   1995478 Nov 22 10:20 log.47523449._008423.job.log.tgz.1
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas      8646 Nov 22 10:20 heartbeat.json
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas        95 Nov 22 10:21 pilot_heartbeat.json
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas       823 Nov 22 10:21 pilotlog.txt
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas   5062962 Nov 22 10:21 log.47523449._008423.job.log.1
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas       353 Nov 22 10:21 output.list
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas       620 Nov 22 10:21 runtime_log
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas   7075840 Nov 22 10:21 result.tar.gz
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas      9338 Nov 22 10:21 runtime_log.err
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas       665 Nov 22 10:21 g2BNDmLePg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmj1GKDmgrDjQn.diag
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas        29 Nov 22 10:26 wrapper_checkpoint.txt
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 10:26 boinc_mmap_file
[2025-11-22 10:26:57] -rw-r--r--. 1 boincer umatlas     12368 Nov 22 10:26 stderr.txt
[2025-11-22 10:26:57] HITS file was successfully produced:
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas 926535170 Nov 22 10:18 shared/HITS.pool.root.1
[2025-11-22 10:26:57]  *** Contents of shared directory: ***
[2025-11-22 10:26:57] total 1313716
[2025-11-22 10:26:57] -rw-r--r--. 2 boincer umatlas 411011301 Nov 21 22:13 ATLAS.root_0
[2025-11-22 10:26:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 22:13 start_atlas.sh
[2025-11-22 10:26:57] -rw-r--r--. 2 boincer umatlas    590100 Nov 21 22:13 input.tar.gz
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas 926535170 Nov 22 10:18 HITS.pool.root.1
[2025-11-22 10:26:57] -rw-------. 1 boincer umatlas   7075840 Nov 22 10:21 result.tar.gz
10:26:58 (2460470): run_atlas exited; CPU time 142530.799356
10:26:58 (2460470): called boinc_finish(0)

</stderr_txt>
]]>

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