Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:40 (430304): wrapper (7.7.26015): starting
17:39:40 (430304): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 17:39:40] Arguments: --nthreads 12
[2025-11-21 17:39:40] Threads: 12
[2025-11-21 17:39:40] Checking for CVMFS
[2025-11-21 17:39:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 17:39:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 17:39:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 17:39:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 17:39:41] 2.11.5.0 2950530 21845 257716 153154 3 396 43871244 45568000 23607 130560 0 223643263 99.816 120535020 28336 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 17:39:41] CVMFS is ok
[2025-11-21 17:39:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 17:39:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 17:39:41] Further information can be found at the LHC@home message board.
[2025-11-21 17:39:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:39:41] Checking for apptainer binary...
[2025-11-21 17:39:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 17:39:41] Running /usr/bin/apptainer --version
[2025-11-21 17:39:41] apptainer version 1.4.1-1.el9
[2025-11-21 17:39:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:39:41] wns0081.triumf.lcg
[2025-11-21 17:39:41] apptainer works
[2025-11-21 17:39:41] Set ATHENA_PROC_NUMBER=12
[2025-11-21 17:39:41] Set ATHENA_CORE_NUMBER=12
[2025-11-21 17:39:41] Starting ATLAS job with PandaID=6895326405
[2025-11-21 17:39:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 17:43:59]  *** The last 200 lines of the pilot log: ***
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | wrong length of table data, x=[1763775620.0], y=[1064.0] (must be same and length>=4)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | could have reported an average CPU frequency of 2759 MHz (4 samples)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | ..............................
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . Timing measurements:
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . get job = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . initial setup = 2 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . payload setup = 6 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . stage-in = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . payload execution = 64 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . stage-out = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . log creation = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | ..............................
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895326405/pilotlog.txt
[2025-11-21 17:43:59] 2025-11-22 01:43:24,436 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 17:43:59] - Log from pilotlog.txt -
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895326405/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | INFO     | extracted standard info from prmon json
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | wrong length of table data, x=[1763775620.0], y=[1064.0] (must be same and length>=4)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | could have reported an average CPU frequency of 2759 MHz (4 samples)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | ..............................
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . Timing measurements:
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . get job = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . initial setup = 2 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . payload setup = 6 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . stage-in = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . payload execution = 64 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . stage-out = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . log creation = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | ..............................
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895326405/pilotlog.txt
[2025-11-21 17:43:59] 2025-11-22 01:43:24,436 | WARNING  | 
[2025-11-21 17:43:59] [begin log extracts]
[2025-11-21 17:43:59] - Log from pilotlog.txt -
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895326405/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | INFO     | extracted standard info from prmon json
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 17:43:59] 2025-11-22 01:43:24,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 17:43:59] 2025-11-22 01:43:24,422 | WARNING  | wrong length of table data, x=[1763775620.0], y=[1064.0] (must be same and length>=4)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | could have reported an average CPU frequency of 2759 MHz (4 samples)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | ..............................
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . Timing measurements:
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . get job = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . initial setup = 2 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,423 | INFO     | . payload setup = 6 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . stage-in = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . payload execution = 64 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . stage-out = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | . log creation = 0 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | ..............................
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 17:43:59] 2025-11-22 01:43:24,424 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895326405/pilotlog.txt
[2025-11-21 17:43:59] [end log extracts]
[2025-11-21 17:43:59] 2025-11-22 01:43:24,436 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 17:43:59] 2025-11-22 01:43:24,437 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | 
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | job summary report
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | --------------------------------------------------
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | PanDA job id: 6895326405
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | task id: 47556137
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 17:41:15,695 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | pilot state: failed 
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | transexitcode: 65
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | exeerrorcode: 65
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | exitcode: 65
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 17:43:59] 2025-11-22 01:43:24,988 | INFO     | cpuconsumptiontime: 43 s
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | nevents: 0
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | neventsw: 0
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | pid: 440674
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | pgrp: 440674
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | corecount: 12
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | event service: False
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | sizes: {0: 2298800, 5: 2299062, 11: 2299118, 74: 2324536, 75: 2324512, 76: 2328830, 77: 2329014, 196: 2329208}
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | --------------------------------------------------
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | 
[2025-11-21 17:43:59] 2025-11-22 01:43:24,989 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 17:43:59] 2025-11-22 01:43:25,015 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,015 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,015 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,015 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 17:43:59] 2025-11-22 01:43:25,016 | INFO     | job 6895326405 has completed (purged errors)
[2025-11-21 17:43:59] 2025-11-22 01:43:25,017 | INFO     | overall cleanup function is called
[2025-11-21 17:43:59] 2025-11-22 01:43:26,024 | INFO     | --- collectZombieJob: --- 10, [440674]
[2025-11-21 17:43:59] 2025-11-22 01:43:26,025 | INFO     | zombie collector waiting for pid 440674
[2025-11-21 17:43:59] 2025-11-22 01:43:26,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 17:43:59] 2025-11-22 01:43:26,025 | INFO     | collected zombie processes
[2025-11-21 17:43:59] 2025-11-22 01:43:26,025 | INFO     | will attempt to kill all subprocesses of pid=440674
[2025-11-21 17:43:59] 2025-11-22 01:43:26,197 | INFO     | process IDs to be killed: [440674] (in reverse order)
[2025-11-21 17:43:59] 2025-11-22 01:43:26,269 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 17:43:59] 2025-11-22 01:43:26,270 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 17:43:59] 2025-11-22 01:43:26,277 | INFO     | did not find any defunct processes belonging to 440674
[2025-11-21 17:43:59] 2025-11-22 01:43:26,284 | INFO     | did not find any defunct processes belonging to 440674
[2025-11-21 17:43:59] 2025-11-22 01:43:26,285 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 17:43:59] 2025-11-22 01:43:26,285 | INFO     | ready for new job
[2025-11-21 17:43:59] 2025-11-22 01:43:26,285 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 17:43:59] 2025-11-22 01:43:26,287 | INFO     | ***************************************
[2025-11-21 17:43:59] 2025-11-22 01:43:26,287 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 17:43:59] 2025-11-22 01:43:26,287 | INFO     | ***************************************
[2025-11-21 17:43:59] 2025-11-22 01:43:26,287 | INFO     | 
[2025-11-21 17:43:59] 2025-11-22 01:43:26,289 | INFO     | architecture information:
[2025-11-21 17:43:59] 2025-11-22 01:43:26,289 | INFO     | executing command: cat /etc/os-release
[2025-11-21 17:43:59] 2025-11-22 01:43:26,300 | INFO     | cat /etc/os-release:
[2025-11-21 17:43:59] NAME="CentOS Linux"
[2025-11-21 17:43:59] VERSION="7 (Core)"
[2025-11-21 17:43:59] ID="centos"
[2025-11-21 17:43:59] ID_LIKE="rhel fedora"
[2025-11-21 17:43:59] VERSION_ID="7"
[2025-11-21 17:43:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 17:43:59] ANSI_COLOR="0;31"
[2025-11-21 17:43:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 17:43:59] HOME_URL="https://www.centos.org/"
[2025-11-21 17:43:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 17:43:59] 
[2025-11-21 17:43:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 17:43:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 17:43:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 17:43:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 17:43:59] 
[2025-11-21 17:43:59] 2025-11-22 01:43:26,301 | INFO     | ***************************************
[2025-11-21 17:43:59] 2025-11-22 01:43:26,803 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 17:43:59] 2025-11-22 01:43:26,814 | INFO     | sufficient remaining disk space (1843673432064 B)
[2025-11-21 17:43:59] 2025-11-22 01:43:26,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 17:43:59] 2025-11-22 01:43:26,815 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 17:43:59] 2025-11-22 01:43:26,815 | INFO     | update_server=False
[2025-11-21 17:43:59] 2025-11-22 01:43:26,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 17:43:59] 2025-11-22 01:43:26,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:43:59] 2025-11-22 01:43:26,815 | INFO     | aborting loop
[2025-11-21 17:43:59] 2025-11-22 01:43:26,948 | INFO     | all data control threads have been joined
[2025-11-21 17:43:59] 2025-11-22 01:43:27,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 17:43:59] 2025-11-22 01:43:27,820 | INFO     | [job] job monitor thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:27,821 | INFO     | [job] retrieve thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:27,953 | INFO     | [data] control thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:27,977 | INFO     | all job control threads have been joined
[2025-11-21 17:43:59] 2025-11-22 01:43:28,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 17:43:59] 2025-11-22 01:43:28,225 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:28,243 | INFO     | all payload control threads have been joined
[2025-11-21 17:43:59] 2025-11-22 01:43:28,319 | INFO     | [payload] validate_post thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:28,485 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:28,879 | INFO     | [payload] failed_post thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:28,983 | INFO     | [job] control thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:29,032 | INFO     | [job] validate thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:29,105 | INFO     | [data] copytool_in thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:29,127 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:29,248 | INFO     | [payload] control thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:29,309 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:29,479 | INFO     | [data] copytool_out thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:29,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:43:59] 2025-11-22 01:43:30,508 | INFO     | [job] queue monitor thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:32,158 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 17:43:59] 2025-11-22 01:43:52,778 | INFO     | [monitor] cgroup control has ended
[2025-11-21 17:43:59] 2025-11-22 01:43:54,081 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139814322755392)>', '<ExcThread(monitor, started 139813759985408)>']
[2025-11-21 17:43:59] 2025-11-22 01:43:57,551 | INFO     | PID=433976 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 17:43:59] 2025-11-22 01:43:57,551 | INFO     | .. there are 26 such processes running
[2025-11-21 17:43:59] 2025-11-22 01:43:57,551 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 17:43:59] 2025-11-22 01:43:57,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 17:43:59] 2025-11-22 01:43:57,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 17:43:59] 2025-11-22 01:43:57,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 17:43:59] 2025-11-22 01:43:57,552 | INFO     | [monitor] control thread has ended
[2025-11-21 17:43:59] 2025-11-22 01:43:59,106 | INFO     | all workflow threads have been joined
[2025-11-21 17:43:59] 2025-11-22 01:43:59,107 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 17:43:59] 2025-11-22 01:43:59,107 | INFO     | traces error code: 0
[2025-11-21 17:43:59] 2025-11-22 01:43:59,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 17:43:59] 2025-11-22 01:43:59,226 [wrapper] ==== pilot stdout END ====
[2025-11-21 17:43:59] 2025-11-22 01:43:59,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 17:43:59] 2025-11-22 01:43:59,229 [wrapper] pilotpid: 433976
[2025-11-21 17:43:59] 2025-11-22 01:43:59,231 [wrapper] Pilot exit status: 0
[2025-11-21 17:43:59] 2025-11-22 01:43:59,238 [wrapper] pandaids: 6895326405
[2025-11-21 17:43:59] 2025-11-22 01:43:59,296 [wrapper] cleanup supervisor_pilot  433982 433977
[2025-11-21 17:43:59] 2025-11-22 01:43:59,300 [wrapper] Test setup, not cleaning
[2025-11-21 17:43:59] 2025-11-22 01:43:59,303 [wrapper] apfmon messages muted
[2025-11-21 17:43:59] 2025-11-22 01:43:59,305 [wrapper] ==== wrapper stdout END ====
[2025-11-21 17:43:59] 2025-11-22 01:43:59,307 [wrapper] ==== wrapper stderr END ====
[2025-11-21 17:43:59]  *** Error codes and diagnostics ***
[2025-11-21 17:43:59]     "exeErrorCode": 65,
[2025-11-21 17:43:59]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 17:43:59]     "pilotErrorCode": 1305,
[2025-11-21 17:43:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 17:43:59]  *** Listing of results directory ***
[2025-11-21 17:43:59] total 404952
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc    576529 Nov 21 07:23 pilot3.tar.gz
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc      5112 Nov 21 07:40 queuedata.json
[2025-11-21 17:43:59] -rwx------. 1 boinc boinc     36292 Nov 21 07:42 runpilot2-wrapper.sh
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc       100 Nov 21 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 17:43:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 17:39 run_atlas
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc       105 Nov 21 17:39 job.xml
[2025-11-21 17:43:59] -rw-r--r--. 2 boinc boinc 410465131 Nov 21 17:39 EVNT.47483658._000044.pool.root.1
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc      6594 Nov 21 17:39 init_data.xml
[2025-11-21 17:43:59] -rw-r--r--. 2 boinc boinc     15847 Nov 21 17:39 start_atlas.sh
[2025-11-21 17:43:59] drwxrwx--x. 2 boinc boinc      4096 Nov 21 17:39 shared
[2025-11-21 17:43:59] -rw-r--r--. 2 boinc boinc    590102 Nov 21 17:39 input.tar.gz
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc         0 Nov 21 17:39 boinc_lockfile
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc      2784 Nov 21 17:39 pandaJob.out
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc    989798 Nov 21 17:39 agis_schedconf.cvmfs.json
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc   1526164 Nov 21 17:39 agis_ddmendpoints.agis.ALL.json
[2025-11-21 17:43:59] drwx------. 5 boinc boinc      4096 Nov 21 17:39 pilot3
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc       523 Nov 21 17:40 boinc_task_state.xml
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc       985 Nov 21 17:41 memory_monitor_summary.json
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc     48695 Nov 21 17:41 log.47556137._000433.job.log.tgz.1
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc     10320 Nov 21 17:43 heartbeat.json
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc        23 Nov 21 17:43 wrapper_checkpoint.txt
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc        95 Nov 21 17:43 pilot_heartbeat.json
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc      8192 Nov 21 17:43 boinc_mmap_file
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc      4822 Nov 21 17:43 pilotlog.txt
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc     94475 Nov 21 17:43 log.47556137._000433.job.log.1
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc       186 Nov 21 17:43 output.list
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc       620 Nov 21 17:43 runtime_log
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc    163840 Nov 21 17:43 result.tar.gz
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc       647 Nov 21 17:43 SDLODmPSig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmThHKDmjsc0ym.diag
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc      8636 Nov 21 17:43 runtime_log.err
[2025-11-21 17:43:59] -rw-r--r--. 1 boinc boinc     22395 Nov 21 17:43 stderr.txt
[2025-11-21 17:43:59] No HITS result produced
[2025-11-21 17:43:59]  *** Contents of shared directory: ***
[2025-11-21 17:43:59] total 401608
[2025-11-21 17:43:59] -rw-r--r--. 2 boinc boinc 410465131 Nov 21 17:39 ATLAS.root_0
[2025-11-21 17:43:59] -rw-r--r--. 2 boinc boinc     15847 Nov 21 17:39 start_atlas.sh
[2025-11-21 17:43:59] -rw-r--r--. 2 boinc boinc    590102 Nov 21 17:39 input.tar.gz
[2025-11-21 17:43:59] -rw-------. 1 boinc boinc    163840 Nov 21 17:43 result.tar.gz
17:44:00 (430304): run_atlas exited; CPU time 41.054407
17:44:00 (430304): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN