Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:13:20 (23836): wrapper (7.7.26015): starting
22:13:20 (23836): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 22:13:20] Arguments: --nthreads 8
[2025-11-21 22:13:20] Threads: 8
[2025-11-21 22:13:20] Checking for CVMFS
[2025-11-21 22:13:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:13:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:13:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:13:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:13:21] 2.11.2.0 2795 41102 85672 153156 2 80 10212979 20275201 1 130560 0 4999141 99.524 2833127 28169 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 22:13:21] CVMFS is ok
[2025-11-21 22:13:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 22:13:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 22:13:21] Further information can be found at the LHC@home message board.
[2025-11-21 22:13:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:13:21] Checking for apptainer binary...
[2025-11-21 22:13:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 22:13:21] Running /usr/bin/apptainer --version
[2025-11-21 22:13:21] apptainer version 1.3.2-1.el7
[2025-11-21 22:13:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:13:23] c-204-18.aglt2.org
[2025-11-21 22:13:23] apptainer works
[2025-11-21 22:13:23] Set ATHENA_PROC_NUMBER=8
[2025-11-21 22:13:23] Set ATHENA_CORE_NUMBER=8
[2025-11-21 22:13:23] Starting ATLAS job with PandaID=6894277123
[2025-11-21 22:13:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:10:30 (692): wrapper (7.7.26015): starting
02:10:30 (692): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 02:10:30] Arguments: --nthreads 8
[2025-11-22 02:10:30] Threads: 8
[2025-11-22 02:10:30] This job has been restarted, cleaning up previous attempt
[2025-11-22 02:10:30] Checking for CVMFS
[2025-11-22 02:10:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 02:10:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 02:10:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 02:10:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 02:10:31] 2.11.2.0 2795 41339 86212 153163 2 1 10522041 20275201 1 130560 0 5116564 99.534 2843728 28186 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 02:10:31] CVMFS is ok
[2025-11-22 02:10:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 02:10:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 02:10:31] Further information can be found at the LHC@home message board.
[2025-11-22 02:10:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 02:10:31] Checking for apptainer binary...
[2025-11-22 02:10:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 02:10:31] Running /usr/bin/apptainer --version
[2025-11-22 02:10:31] apptainer version 1.3.2-1.el7
[2025-11-22 02:10:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 02:10:33] c-204-18.aglt2.org
[2025-11-22 02:10:33] apptainer works
[2025-11-22 02:10:33] Set ATHENA_PROC_NUMBER=8
[2025-11-22 02:10:33] Set ATHENA_CORE_NUMBER=8
[2025-11-22 02:10:33] Starting ATLAS job with PandaID=6894277123
[2025-11-22 02:10:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:54:13]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:54:13] 2025-11-22 19:53:12,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:54:13] 2025-11-22 19:53:12,795 | INFO     | time since job start (45742s) is within the limit (172800.0s)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,262 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 14:54:13] 2025-11-22 19:53:13,265 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-22 14:54:13] 2025-11-22 19:53:13,268 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894277123/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,268 | INFO     | extracted standard info from prmon json
[2025-11-22 14:54:13] 2025-11-22 19:53:13,269 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:54:13] 2025-11-22 19:53:13,269 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:54:13] 2025-11-22 19:53:13,281 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:54:13] 2025-11-22 19:53:13,282 | INFO     | sum of square deviations: 130816409869.57869
[2025-11-22 14:54:13] 2025-11-22 19:53:13,294 | INFO     | sum of deviations: 908701775620.4447
[2025-11-22 14:54:13] 2025-11-22 19:53:13,294 | INFO     | mean x: 1763818328.1386666
[2025-11-22 14:54:13] 2025-11-22 19:53:13,294 | INFO     | mean y: 3193613.0053333333
[2025-11-22 14:54:13] 2025-11-22 19:53:13,294 | INFO     | intersect: -12248976036.425
[2025-11-22 14:54:13] 2025-11-22 19:53:13,295 | INFO     | chi2: 6.447784355911321
[2025-11-22 14:54:13] 2025-11-22 19:53:13,296 | INFO     | sum of square deviations: 128217632815.02534
[2025-11-22 14:54:13] 2025-11-22 19:53:13,307 | INFO     | sum of deviations: 1219509755413.8848
[2025-11-22 14:54:13] 2025-11-22 19:53:13,307 | INFO     | mean x: 1763818175.642953
[2025-11-22 14:54:13] 2025-11-22 19:53:13,307 | INFO     | mean y: 3211853.597315436
[2025-11-22 14:54:13] 2025-11-22 19:53:13,307 | INFO     | intersect: -16772900953.570618
[2025-11-22 14:54:13] 2025-11-22 19:53:13,308 | INFO     | chi2: 2.644388605659448
[2025-11-22 14:54:13] 2025-11-22 19:53:13,308 | INFO     | current chi2=2.644388605659448 (change=58.98763885868677 %)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,309 | INFO     | sum of square deviations: 125653417049.52855
[2025-11-22 14:54:13] 2025-11-22 19:53:13,321 | INFO     | sum of deviations: 1252561547058.9373
[2025-11-22 14:54:13] 2025-11-22 19:53:13,321 | INFO     | mean x: 1763818023.1445947
[2025-11-22 14:54:13] 2025-11-22 19:53:13,321 | INFO     | mean y: 3213809.1594594596
[2025-11-22 14:54:13] 2025-11-22 19:53:13,321 | INFO     | intersect: -17579202042.92675
[2025-11-22 14:54:13] 2025-11-22 19:53:13,322 | INFO     | chi2: 2.467837321088024
[2025-11-22 14:54:13] 2025-11-22 19:53:13,322 | INFO     | current chi2=2.467837321088024 (change=6.67645005705946 %)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,322 | INFO     | right removable region: 739
[2025-11-22 14:54:13] 2025-11-22 19:53:13,323 | INFO     | sum of square deviations: 128217340625.02544
[2025-11-22 14:54:13] 2025-11-22 19:53:13,334 | INFO     | sum of deviations: 680479939669.9851
[2025-11-22 14:54:13] 2025-11-22 19:53:13,334 | INFO     | mean x: 1763818480.642953
[2025-11-22 14:54:13] 2025-11-22 19:53:13,335 | INFO     | mean y: 3206983.2067114096
[2025-11-22 14:54:13] 2025-11-22 19:53:13,335 | INFO     | intersect: -9357797444.477217
[2025-11-22 14:54:13] 2025-11-22 19:53:13,336 | INFO     | chi2: 4.225821610815592
[2025-11-22 14:54:13] 2025-11-22 19:53:13,336 | INFO     | current chi2=4.225821610815592 (change=34.46087248650983 %)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,337 | INFO     | sum of square deviations: 125653013717.52856
[2025-11-22 14:54:13] 2025-11-22 19:53:13,348 | INFO     | sum of deviations: 622957651277.4526
[2025-11-22 14:54:13] 2025-11-22 19:53:13,348 | INFO     | mean x: 1763818633.1445947
[2025-11-22 14:54:13] 2025-11-22 19:53:13,348 | INFO     | mean y: 3210403.3135135137
[2025-11-22 14:54:13] 2025-11-22 19:53:13,348 | INFO     | intersect: -8741381393.372406
[2025-11-22 14:54:13] 2025-11-22 19:53:13,349 | INFO     | chi2: 4.156794157135717
[2025-11-22 14:54:13] 2025-11-22 19:53:13,349 | INFO     | current chi2=4.156794157135717 (change=1.6334682349866596 %)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,349 | INFO     | left removable region: 20
[2025-11-22 14:54:13] 2025-11-22 19:53:13,350 | INFO     | sum of square deviations: 115256344267.07375
[2025-11-22 14:54:13] 2025-11-22 19:53:13,361 | INFO     | sum of deviations: 882248805339.8556
[2025-11-22 14:54:13] 2025-11-22 19:53:13,361 | INFO     | mean x: 1763818602.6522949
[2025-11-22 14:54:13] 2025-11-22 19:53:13,361 | INFO     | mean y: 3235992.6634214185
[2025-11-22 14:54:13] 2025-11-22 19:53:13,361 | INFO     | intersect: -13498206074.771235
[2025-11-22 14:54:13] 2025-11-22 19:53:13,362 | INFO     | chi2: 0.10503719442730994
[2025-11-22 14:54:13] 2025-11-22 19:53:13,362 | INFO     | current memory leak: 7.65 B/s (using 719 data points, chi2=0.11)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,363 | INFO     | could have reported an average CPU frequency of 2165 MHz (28 samples)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,363 | INFO     | ..............................
[2025-11-22 14:54:13] 2025-11-22 19:53:13,363 | INFO     | . Timing measurements:
[2025-11-22 14:54:13] 2025-11-22 19:53:13,363 | INFO     | . get job = 0 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,363 | INFO     | . initial setup = 2 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,363 | INFO     | . payload setup = 9 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,363 | INFO     | . stage-in = 0 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,364 | INFO     | . payload execution = 45700 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,364 | INFO     | . stage-out = 3 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,364 | INFO     | . log creation = 0 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,364 | INFO     | ..............................
[2025-11-22 14:54:13] 2025-11-22 19:53:13,458 | INFO     | 
[2025-11-22 14:54:13] 2025-11-22 19:53:13,458 | INFO     | job summary report
[2025-11-22 14:54:13] 2025-11-22 19:53:13,458 | INFO     | --------------------------------------------------
[2025-11-22 14:54:13] 2025-11-22 19:53:13,458 | INFO     | PanDA job id: 6894277123
[2025-11-22 14:54:13] 2025-11-22 19:53:13,458 | INFO     | task id: 47533967
[2025-11-22 14:54:13] 2025-11-22 19:53:13,459 | INFO     | errors: (none)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,459 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:54:13] 2025-11-22 19:53:13,459 | INFO     | pilot state: finished 
[2025-11-22 14:54:13] 2025-11-22 19:53:13,459 | INFO     | transexitcode: 0
[2025-11-22 14:54:13] 2025-11-22 19:53:13,460 | INFO     | exeerrorcode: 0
[2025-11-22 14:54:13] 2025-11-22 19:53:13,460 | INFO     | exeerrordiag: 
[2025-11-22 14:54:13] 2025-11-22 19:53:13,460 | INFO     | exitcode: 0
[2025-11-22 14:54:13] 2025-11-22 19:53:13,460 | INFO     | exitmsg: OK
[2025-11-22 14:54:13] 2025-11-22 19:53:13,460 | INFO     | cpuconsumptiontime: 355893 s
[2025-11-22 14:54:13] 2025-11-22 19:53:13,461 | INFO     | nevents: 1000
[2025-11-22 14:54:13] 2025-11-22 19:53:13,461 | INFO     | neventsw: 0
[2025-11-22 14:54:13] 2025-11-22 19:53:13,461 | INFO     | pid: 11001
[2025-11-22 14:54:13] 2025-11-22 19:53:13,461 | INFO     | pgrp: 11001
[2025-11-22 14:54:13] 2025-11-22 19:53:13,461 | INFO     | corecount: 8
[2025-11-22 14:54:13] 2025-11-22 19:53:13,462 | INFO     | event service: False
[2025-11-22 14:54:13] 2025-11-22 19:53:13,462 | INFO     | sizes: {0: 2298585, 1: 2298784, 7: 2299046, 11: 2299074, 45713: 2345224, 45719: 2354218, 45720: 2354402, 45726: 2354648}
[2025-11-22 14:54:13] 2025-11-22 19:53:13,462 | INFO     | --------------------------------------------------
[2025-11-22 14:54:13] 2025-11-22 19:53:13,462 | INFO     | 
[2025-11-22 14:54:13] 2025-11-22 19:53:13,463 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 14:54:13] 2025-11-22 19:53:13,491 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,492 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,493 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,493 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,495 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:54:13] 2025-11-22 19:53:13,495 | INFO     | job 6894277123 has completed (purged errors)
[2025-11-22 14:54:13] 2025-11-22 19:53:13,495 | INFO     | overall cleanup function is called
[2025-11-22 14:54:13] 2025-11-22 19:53:14,511 | INFO     | --- collectZombieJob: --- 10, [11001]
[2025-11-22 14:54:13] 2025-11-22 19:53:14,511 | INFO     | zombie collector waiting for pid 11001
[2025-11-22 14:54:13] 2025-11-22 19:53:14,512 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:54:13] 2025-11-22 19:53:14,512 | INFO     | collected zombie processes
[2025-11-22 14:54:13] 2025-11-22 19:53:14,512 | INFO     | will attempt to kill all subprocesses of pid=11001
[2025-11-22 14:54:13] 2025-11-22 19:53:14,600 | INFO     | process IDs to be killed: [11001] (in reverse order)
[2025-11-22 14:54:13] 2025-11-22 19:53:14,654 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:54:13] 2025-11-22 19:53:14,655 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:54:13] 2025-11-22 19:53:14,659 | INFO     | did not find any defunct processes belonging to 11001
[2025-11-22 14:54:13] 2025-11-22 19:53:14,663 | INFO     | did not find any defunct processes belonging to 11001
[2025-11-22 14:54:13] 2025-11-22 19:53:14,666 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:54:13] 2025-11-22 19:53:14,667 | INFO     | ready for new job
[2025-11-22 14:54:13] 2025-11-22 19:53:14,667 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:54:13] 2025-11-22 19:53:14,670 | INFO     | ***************************************
[2025-11-22 14:54:13] 2025-11-22 19:53:14,671 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:54:13] 2025-11-22 19:53:14,671 | INFO     | ***************************************
[2025-11-22 14:54:13] 2025-11-22 19:53:14,671 | INFO     | 
[2025-11-22 14:54:13] 2025-11-22 19:53:14,671 | INFO     | architecture information:
[2025-11-22 14:54:13] 2025-11-22 19:53:14,672 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:54:13] 2025-11-22 19:53:14,689 | INFO     | cat /etc/os-release:
[2025-11-22 14:54:13] NAME="CentOS Linux"
[2025-11-22 14:54:13] VERSION="7 (Core)"
[2025-11-22 14:54:13] ID="centos"
[2025-11-22 14:54:13] ID_LIKE="rhel fedora"
[2025-11-22 14:54:13] VERSION_ID="7"
[2025-11-22 14:54:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:54:13] ANSI_COLOR="0;31"
[2025-11-22 14:54:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:54:13] HOME_URL="https://www.centos.org/"
[2025-11-22 14:54:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:54:13] 
[2025-11-22 14:54:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:54:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:54:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:54:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:54:13] 
[2025-11-22 14:54:13] 2025-11-22 19:53:14,690 | INFO     | ***************************************
[2025-11-22 14:54:13] 2025-11-22 19:53:15,193 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 14:54:13] 2025-11-22 19:53:15,215 | INFO     | sufficient remaining disk space (17423138816 B)
[2025-11-22 14:54:13] 2025-11-22 19:53:15,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:54:13] 2025-11-22 19:53:15,216 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:54:13] 2025-11-22 19:53:15,217 | INFO     | update_server=False
[2025-11-22 14:54:13] 2025-11-22 19:53:15,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:54:13] 2025-11-22 19:53:15,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:54:13] 2025-11-22 19:53:15,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:54:13] 2025-11-22 19:53:15,244 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 14:54:13] 2025-11-22 19:53:15,244 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 14:54:13] 2025-11-22 19:53:15,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:54:13] 2025-11-22 19:53:15,244 | INFO     | will abort loop
[2025-11-22 14:54:13] 2025-11-22 19:53:15,631 | INFO     | all job control threads have been joined
[2025-11-22 14:54:13] 2025-11-22 19:53:15,638 | INFO     | all payload control threads have been joined
[2025-11-22 14:54:13] 2025-11-22 19:53:15,715 | INFO     | all data control threads have been joined
[2025-11-22 14:54:13] 2025-11-22 19:53:16,223 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,224 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,250 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,310 | INFO     | [job] validate thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,361 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,636 | INFO     | [job] control thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,643 | INFO     | [payload] control thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,647 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,692 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,716 | INFO     | [data] control thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:16,844 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:17,224 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:17,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:17,346 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:17,471 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:18,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:54:13] 2025-11-22 19:53:22,027 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:54:13] 2025-11-22 19:53:46,024 | INFO     | PID=4512 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 14:54:13] 2025-11-22 19:53:46,026 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:54:13] 2025-11-22 19:53:46,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:54:13] 2025-11-22 19:53:46,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:54:13] 2025-11-22 19:54:06,241 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:54:13] 2025-11-22 19:54:07,717 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305047525184)>', '<ExcThread(monitor, started 140304090916608)>']
[2025-11-22 14:54:13] 2025-11-22 19:54:08,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:54:13] 2025-11-22 19:54:08,073 | INFO     | [monitor] control thread has ended
[2025-11-22 14:54:13] 2025-11-22 19:54:12,729 | INFO     | all workflow threads have been joined
[2025-11-22 14:54:13] 2025-11-22 19:54:12,729 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:54:13] 2025-11-22 19:54:12,730 | INFO     | traces error code: 0
[2025-11-22 14:54:13] 2025-11-22 19:54:12,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:54:13] 2025-11-22 19:54:12,851 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:54:13] 2025-11-22 19:54:12,856 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:54:13] 2025-11-22 19:54:12,860 [wrapper] pilotpid: 4512
[2025-11-22 14:54:13] 2025-11-22 19:54:12,865 [wrapper] Pilot exit status: 0
[2025-11-22 14:54:13] 2025-11-22 19:54:12,882 [wrapper] pandaids: 6894277123 6894277123
[2025-11-22 14:54:13] 2025-11-22 19:54:12,934 [wrapper] cleanup supervisor_pilot 23537 4513
[2025-11-22 14:54:13] 2025-11-22 19:54:12,939 [wrapper] Test setup, not cleaning
[2025-11-22 14:54:13] 2025-11-22 19:54:12,943 [wrapper] apfmon messages muted
[2025-11-22 14:54:13] 2025-11-22 19:54:12,948 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:54:13] 2025-11-22 19:54:12,953 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:54:13]  *** Error codes and diagnostics ***
[2025-11-22 14:54:13]     "exeErrorCode": 0,
[2025-11-22 14:54:13]     "exeErrorDiag": "",
[2025-11-22 14:54:13]     "pilotErrorCode": 0,
[2025-11-22 14:54:13]     "pilotErrorDiag": "",
[2025-11-22 14:54:13]  *** Listing of results directory ***
[2025-11-22 14:54:13] total 1732400
[2025-11-22 14:54:13] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 02:49 pilot3.tar.gz
[2025-11-22 14:54:13] -rwx------ 1 boincer umatlas     36292 Nov 21 03:08 runpilot2-wrapper.sh
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 03:08 queuedata.json
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas       100 Nov 21 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:54:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 22:13 run_atlas
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas       105 Nov 21 22:13 job.xml
[2025-11-22 14:54:13] -rw-r--r-- 3 boincer umatlas 411803057 Nov 21 22:13 EVNT.47493127._002322.pool.root.1
[2025-11-22 14:54:13] -rw-r--r-- 3 boincer umatlas 411803057 Nov 21 22:13 ATLAS.root_0
[2025-11-22 14:54:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 22:13 start_atlas.sh
[2025-11-22 14:54:13] drwxrwx--x 2 boincer umatlas      4096 Nov 21 22:13 shared
[2025-11-22 14:54:13] -rw-r--r-- 2 boincer umatlas    590104 Nov 21 22:13 input.tar.gz
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas         0 Nov 21 22:13 boinc_lockfile
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 02:10 pandaJob.out
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas        57 Nov 22 02:10 setup.sh.local
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas    989752 Nov 22 02:10 agis_schedconf.cvmfs.json
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas       533 Nov 22 14:45 boinc_task_state.xml
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas      5910 Nov 22 14:47 init_data.xml
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas 929884549 Nov 22 14:52 HITS.47533967._002938.pool.root.1
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas      1062 Nov 22 14:52 memory_monitor_summary.json
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas   1526164 Nov 22 14:53 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas   1983192 Nov 22 14:53 log.47533967._002938.job.log.tgz.1
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas      8673 Nov 22 14:53 heartbeat.json
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas        96 Nov 22 14:53 pilot_heartbeat.json
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 14:53 boinc_mmap_file
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas        29 Nov 22 14:53 wrapper_checkpoint.txt
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas      4931 Nov 22 14:54 pilotlog.txt
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas   6295640 Nov 22 14:54 log.47533967._002938.job.log.1
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas       353 Nov 22 14:54 output.list
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas       620 Nov 22 14:54 runtime_log
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas   8294400 Nov 22 14:54 result.tar.gz
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas      9428 Nov 22 14:54 runtime_log.err
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas       793 Nov 22 14:54 F85KDmNNbg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9CJKDm0DeZJo.diag
[2025-11-22 14:54:13] -rw-r--r-- 1 boincer umatlas     23442 Nov 22 14:54 stderr.txt
[2025-11-22 14:54:13] HITS file was successfully produced:
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas 929884549 Nov 22 14:52 shared/HITS.pool.root.1
[2025-11-22 14:54:13]  *** Contents of shared directory: ***
[2025-11-22 14:54:13] total 1318948
[2025-11-22 14:54:13] -rw-r--r-- 3 boincer umatlas 411803057 Nov 21 22:13 ATLAS.root_0
[2025-11-22 14:54:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 22:13 start_atlas.sh
[2025-11-22 14:54:13] -rw-r--r-- 2 boincer umatlas    590104 Nov 21 22:13 input.tar.gz
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas 929884549 Nov 22 14:52 HITS.pool.root.1
[2025-11-22 14:54:13] -rw------- 1 boincer umatlas   8294400 Nov 22 14:54 result.tar.gz
14:54:14 (692): run_atlas exited; CPU time 353251.245169
14:54:14 (692): called boinc_finish(0)

</stderr_txt>
]]>

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