Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:44:00 (30162): wrapper (7.7.26015): starting
19:44:00 (30162): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 19:44:00] Arguments: --nthreads 8
[2025-11-24 19:44:00] Threads: 8
[2025-11-24 19:44:00] Checking for CVMFS
[2025-11-24 19:44:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 19:44:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 19:44:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 19:44:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 19:44:04] 2.11.2.0 24996 282726 142228 153255 1 85 16565370 25165825 1027 130560 11 135958527 99.887 74930537 2802 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 19:44:04] CVMFS is ok
[2025-11-24 19:44:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 19:44:04] Checking for apptainer binary...
[2025-11-24 19:44:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 19:44:04] Running /usr/bin/apptainer --version
[2025-11-24 19:44:04] apptainer version 1.3.2-1.el7
[2025-11-24 19:44:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 19:44:29] cg-vwn259.simple-grid.lan
[2025-11-24 19:44:29] apptainer works
[2025-11-24 19:44:29] Set ATHENA_PROC_NUMBER=8
[2025-11-24 19:44:29] Set ATHENA_CORE_NUMBER=8
[2025-11-24 19:44:29] Starting ATLAS job with PandaID=6894277079
[2025-11-24 19:44:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:20:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:20:20] 2025-11-25 20:19:09,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:20:20] 2025-11-25 20:19:10,695 | INFO     | time since job start (91839s) is within the limit (172800.0s)
[2025-11-25 21:20:20] 2025-11-25 20:19:12,199 | INFO     | monitor loop #6196: job 0:6894277079 is in state 'finished'
[2025-11-25 21:20:20] 2025-11-25 20:19:12,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:20:20] 2025-11-25 20:19:12,702 | INFO     | time since job start (91841s) is within the limit (172800.0s)
[2025-11-25 21:20:20] 2025-11-25 20:19:14,706 | INFO     | monitor loop #6197: job 0:6894277079 is in state 'finished'
[2025-11-25 21:20:20] 2025-11-25 20:19:14,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:20:20] 2025-11-25 20:19:14,710 | INFO     | time since job start (91843s) is within the limit (172800.0s)
[2025-11-25 21:20:20] 2025-11-25 20:19:16,718 | INFO     | time since job start (91845s) is within the limit (172800.0s)
[2025-11-25 21:20:20] 2025-11-25 20:19:17,216 | INFO     | monitor loop #6198: job 0:6894277079 is in state 'finished'
[2025-11-25 21:20:20] 2025-11-25 20:19:17,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:20:20] 2025-11-25 20:19:18,735 | INFO     | time since job start (91847s) is within the limit (172800.0s)
[2025-11-25 21:20:20] 2025-11-25 20:19:19,722 | INFO     | monitor loop #6199: job 0:6894277079 is in state 'finished'
[2025-11-25 21:20:20] 2025-11-25 20:19:19,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:20:20] 2025-11-25 20:19:20,742 | INFO     | time since job start (91849s) is within the limit (172800.0s)
[2025-11-25 21:20:20] 2025-11-25 20:19:21,244 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:20:20] 2025-11-25 20:19:21,245 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 21:20:20] 2025-11-25 20:19:21,247 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6894277079/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:20:20] 2025-11-25 20:19:21,248 | INFO     | extracted standard info from prmon json
[2025-11-25 21:20:20] 2025-11-25 20:19:21,248 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:20:20] 2025-11-25 20:19:21,249 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:20:20] 2025-11-25 20:19:21,280 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:20:20] 2025-11-25 20:19:21,283 | INFO     | sum of square deviations: 1036106236520.7013
[2025-11-25 21:20:20] 2025-11-25 20:19:21,368 | INFO     | sum of deviations: 4292862059938.041
[2025-11-25 21:20:20] 2025-11-25 20:19:21,369 | INFO     | mean x: 1764056241.2374582
[2025-11-25 21:20:20] 2025-11-25 20:19:21,369 | INFO     | mean y: 2824863.8421404683
[2025-11-25 21:20:20] 2025-11-25 20:19:21,369 | INFO     | intersect: -7306126518.436204
[2025-11-25 21:20:20] 2025-11-25 20:19:21,371 | INFO     | chi2: 33.268434599111174
[2025-11-25 21:20:20] 2025-11-25 20:19:21,383 | INFO     | sum of square deviations: 1025745871615.5193
[2025-11-25 21:20:20] 2025-11-25 20:19:21,483 | INFO     | sum of deviations: 4769434637534.425
[2025-11-25 21:20:20] 2025-11-25 20:19:21,484 | INFO     | mean x: 1764056088.7416108
[2025-11-25 21:20:20] 2025-11-25 20:19:21,484 | INFO     | mean y: 2831877.473825503
[2025-11-25 21:20:20] 2025-11-25 20:19:21,484 | INFO     | intersect: -8199541093.276375
[2025-11-25 21:20:20] 2025-11-25 20:19:21,486 | INFO     | chi2: 30.241772799029505
[2025-11-25 21:20:20] 2025-11-25 20:19:21,486 | INFO     | current chi2=30.241772799029505 (change=9.097698273313203 %)
[2025-11-25 21:20:20] 2025-11-25 20:19:21,486 | INFO     | right removable region: 1489
[2025-11-25 21:20:20] 2025-11-25 20:19:21,488 | INFO     | sum of square deviations: 1025744743115.5189
[2025-11-25 21:20:20] 2025-11-25 20:19:21,563 | INFO     | sum of deviations: 3651040396403.7207
[2025-11-25 21:20:20] 2025-11-25 20:19:21,563 | INFO     | mean x: 1764056393.7416108
[2025-11-25 21:20:20] 2025-11-25 20:19:21,563 | INFO     | mean y: 2834310.37852349
[2025-11-25 21:20:20] 2025-11-25 20:19:21,563 | INFO     | intersect: -6276155855.851892
[2025-11-25 21:20:20] 2025-11-25 20:19:21,565 | INFO     | chi2: 28.12411331901064
[2025-11-25 21:20:20] 2025-11-25 20:19:21,565 | INFO     | current chi2=28.12411331901064 (change=15.463069850115444 %)
[2025-11-25 21:20:20] 2025-11-25 20:19:21,566 | INFO     | left removable region: 10
[2025-11-25 21:20:20] 2025-11-25 20:19:21,568 | INFO     | sum of square deviations: 1003194433135.9374
[2025-11-25 21:20:20] 2025-11-25 20:19:21,632 | INFO     | sum of deviations: 3639284338471.7217
[2025-11-25 21:20:20] 2025-11-25 20:19:21,633 | INFO     | mean x: 1764056363.2508452
[2025-11-25 21:20:20] 2025-11-25 20:19:21,633 | INFO     | mean y: 2851709.6288032453
[2025-11-25 21:20:20] 2025-11-25 20:19:21,633 | INFO     | intersect: -6396608338.102799
[2025-11-25 21:20:20] 2025-11-25 20:19:21,635 | INFO     | chi2: 20.12176199714064
[2025-11-25 21:20:20] 2025-11-25 20:19:21,636 | INFO     | current memory leak: 3.63 B/s (using 1479 data points, chi2=20.12)
[2025-11-25 21:20:20] 2025-11-25 20:19:21,638 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-25 21:20:20] 2025-11-25 20:19:21,638 | INFO     | ..............................
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . Timing measurements:
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . get job = 0 s
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . initial setup = 11 s
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . payload setup = 182 s
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . stage-in = 0 s
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . payload execution = 91345 s
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . stage-out = 4 s
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | . log creation = 1 s
[2025-11-25 21:20:20] 2025-11-25 20:19:21,639 | INFO     | ..............................
[2025-11-25 21:20:20] 2025-11-25 20:19:22,065 | INFO     | 
[2025-11-25 21:20:20] 2025-11-25 20:19:22,065 | INFO     | job summary report
[2025-11-25 21:20:20] 2025-11-25 20:19:22,065 | INFO     | --------------------------------------------------
[2025-11-25 21:20:20] 2025-11-25 20:19:22,065 | INFO     | PanDA job id: 6894277079
[2025-11-25 21:20:20] 2025-11-25 20:19:22,065 | INFO     | task id: 47533967
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | errors: (none)
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | pilot state: finished 
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | transexitcode: 0
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | exeerrorcode: 0
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | exeerrordiag: 
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | exitcode: 0
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | exitmsg: OK
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | cpuconsumptiontime: 344993 s
[2025-11-25 21:20:20] 2025-11-25 20:19:22,066 | INFO     | nevents: 1000
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | neventsw: 0
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | pid: 7942
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | pgrp: 7942
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | corecount: 8
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | event service: False
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | sizes: {0: 2284139, 1: 2284338, 12: 2284338, 22: 2284366, 33: 2284394, 44: 2284450, 55: 2284606, 65: 2284634, 76: 2284662, 87: 2284718, 98: 2285316, 108: 2285316, 
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | --------------------------------------------------
[2025-11-25 21:20:20] 2025-11-25 20:19:22,067 | INFO     | 
[2025-11-25 21:20:20] 2025-11-25 20:19:22,068 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-11-25 21:20:20] 2025-11-25 20:19:22,656 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,657 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,657 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,657 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,657 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,657 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,659 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,659 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:20:20] 2025-11-25 20:19:22,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,659 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:20:20] 2025-11-25 20:19:22,659 | INFO     | job 6894277079 has completed (purged errors)
[2025-11-25 21:20:20] 2025-11-25 20:19:22,660 | INFO     | overall cleanup function is called
[2025-11-25 21:20:20] 2025-11-25 20:19:23,686 | INFO     | --- collectZombieJob: --- 10, [7942]
[2025-11-25 21:20:20] 2025-11-25 20:19:23,686 | INFO     | zombie collector waiting for pid 7942
[2025-11-25 21:20:20] 2025-11-25 20:19:23,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:20:20] 2025-11-25 20:19:23,686 | INFO     | collected zombie processes
[2025-11-25 21:20:20] 2025-11-25 20:19:23,687 | INFO     | will attempt to kill all subprocesses of pid=7942
[2025-11-25 21:20:20] 2025-11-25 20:19:23,807 | INFO     | process IDs to be killed: [7942] (in reverse order)
[2025-11-25 21:20:20] 2025-11-25 20:19:24,905 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:20:20] 2025-11-25 20:19:24,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:20:20] 2025-11-25 20:19:24,909 | INFO     | did not find any defunct processes belonging to 7942
[2025-11-25 21:20:20] 2025-11-25 20:19:24,913 | INFO     | did not find any defunct processes belonging to 7942
[2025-11-25 21:20:20] 2025-11-25 20:19:24,968 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:20:20] 2025-11-25 20:19:24,969 | INFO     | ready for new job
[2025-11-25 21:20:20] 2025-11-25 20:19:24,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:20:20] 2025-11-25 20:19:24,976 | INFO     | ***************************************
[2025-11-25 21:20:20] 2025-11-25 20:19:24,976 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:20:20] 2025-11-25 20:19:24,976 | INFO     | ***************************************
[2025-11-25 21:20:20] 2025-11-25 20:19:24,976 | INFO     | 
[2025-11-25 21:20:20] 2025-11-25 20:19:24,977 | INFO     | pilot is running in a VM
[2025-11-25 21:20:20] 2025-11-25 20:19:24,977 | INFO     | architecture information:
[2025-11-25 21:20:20] 2025-11-25 20:19:24,983 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:20:20] 2025-11-25 20:19:25,169 | INFO     | cat /etc/os-release:
[2025-11-25 21:20:20] NAME="CentOS Linux"
[2025-11-25 21:20:20] VERSION="7 (Core)"
[2025-11-25 21:20:20] ID="centos"
[2025-11-25 21:20:20] ID_LIKE="rhel fedora"
[2025-11-25 21:20:20] VERSION_ID="7"
[2025-11-25 21:20:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:20:20] ANSI_COLOR="0;31"
[2025-11-25 21:20:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:20:20] HOME_URL="https://www.centos.org/"
[2025-11-25 21:20:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:20:20] 
[2025-11-25 21:20:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:20:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:20:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:20:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:20:20] 
[2025-11-25 21:20:20] 2025-11-25 20:19:25,170 | INFO     | ***************************************
[2025-11-25 21:20:20] 2025-11-25 20:19:25,673 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-11-25 21:20:20] 2025-11-25 20:19:25,914 | INFO     | sufficient remaining disk space (494931017728 B)
[2025-11-25 21:20:20] 2025-11-25 20:19:25,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:20:20] 2025-11-25 20:19:25,915 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:20:20] 2025-11-25 20:19:25,915 | INFO     | update_server=False
[2025-11-25 21:20:20] 2025-11-25 20:19:25,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:20:20] 2025-11-25 20:19:25,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:20:20] 2025-11-25 20:19:25,922 | INFO     | aborting loop
[2025-11-25 21:20:20] 2025-11-25 20:19:25,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:20:20] 2025-11-25 20:19:26,532 | INFO     | all payload control threads have been joined
[2025-11-25 21:20:20] 2025-11-25 20:19:26,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:20:20] 2025-11-25 20:19:26,885 | INFO     | all data control threads have been joined
[2025-11-25 21:20:20] 2025-11-25 20:19:26,921 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:26,928 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,309 | INFO     | all job control threads have been joined
[2025-11-25 21:20:20] 2025-11-25 20:19:27,380 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,412 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,417 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,522 | INFO     | [job] validate thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,538 | INFO     | [payload] control thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,558 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,659 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,831 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,867 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,891 | INFO     | [data] control thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:27,936 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:28,315 | INFO     | [job] control thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:28,434 [wrapper] supervise_pilot (15 min periods counter: 103)
[2025-11-25 21:20:20] 2025-11-25 20:19:28,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:20:20] 2025-11-25 20:19:32,925 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:20:20] 2025-11-25 20:19:54,071 | INFO     | PID=1483 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 21:20:20] 2025-11-25 20:19:54,071 | INFO     | .. there are 9 such processes running
[2025-11-25 21:20:20] 2025-11-25 20:19:54,072 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:20:20] 2025-11-25 20:19:54,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:20:20] 2025-11-25 20:19:54,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:20:20] 2025-11-25 20:20:10,903 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:20:20] 2025-11-25 20:20:10,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361347393344)>', '<ExcThread(monitor, started 140360529471232)>']
[2025-11-25 21:20:20] 2025-11-25 20:20:11,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:20:20] 2025-11-25 20:20:11,172 | INFO     | [monitor] control thread has ended
[2025-11-25 21:20:20] 2025-11-25 20:20:16,016 | INFO     | all workflow threads have been joined
[2025-11-25 21:20:20] 2025-11-25 20:20:16,016 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:20:20] 2025-11-25 20:20:16,017 | INFO     | traces error code: 0
[2025-11-25 21:20:20] 2025-11-25 20:20:16,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:20:20] 2025-11-25 20:20:16,508 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:20:20] 2025-11-25 20:20:16,606 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:20:20] 2025-11-25 20:20:16,697 [wrapper] pilotpid: 1483
[2025-11-25 21:20:20] 2025-11-25 20:20:16,818 [wrapper] Pilot exit status: 0
[2025-11-25 21:20:20] 2025-11-25 20:20:17,182 [wrapper] pandaids: 6894277079
[2025-11-25 21:20:20] 2025-11-25 20:20:17,871 [wrapper] cleanup supervisor_pilot  9714 1484
[2025-11-25 21:20:20] 2025-11-25 20:20:17,927 [wrapper] Test setup, not cleaning
[2025-11-25 21:20:20] 2025-11-25 20:20:17,975 [wrapper] apfmon messages muted
[2025-11-25 21:20:20] 2025-11-25 20:20:18,080 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:20:20] 2025-11-25 20:20:18,187 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:20:20]  *** Error codes and diagnostics ***
[2025-11-25 21:20:20]     "exeErrorCode": 0,
[2025-11-25 21:20:20]     "exeErrorDiag": "",
[2025-11-25 21:20:20]     "pilotErrorCode": 0,
[2025-11-25 21:20:20]     "pilotErrorDiag": "",
[2025-11-25 21:20:20]  *** Listing of results directory ***
[2025-11-25 21:20:20] total 1337124
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc    576529 Nov 21 08:44 pilot3.tar.gz
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc      5112 Nov 21 08:48 queuedata.json
[2025-11-25 21:20:20] -rwx------. 1 boinc boinc     36292 Nov 21 08:49 runpilot2-wrapper.sh
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc       100 Nov 24 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:20:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 19:43 run_atlas
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc       105 Nov 24 19:43 job.xml
[2025-11-25 21:20:20] -rw-r--r--. 2 boinc boinc 412121481 Nov 24 19:44 EVNT.47493127._002318.pool.root.1
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc      6392 Nov 24 19:44 init_data.xml
[2025-11-25 21:20:20] -rw-r--r--. 2 boinc boinc     15847 Nov 24 19:44 start_atlas.sh
[2025-11-25 21:20:20] drwxrwx--x. 2 boinc boinc        68 Nov 24 19:44 shared
[2025-11-25 21:20:20] -rw-r--r--. 2 boinc boinc    590103 Nov 24 19:44 input.tar.gz
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc         0 Nov 24 19:44 boinc_lockfile
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc      2785 Nov 24 19:44 pandaJob.out
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc    991801 Nov 24 19:48 agis_schedconf.cvmfs.json
[2025-11-25 21:20:20] drwx------. 5 boinc boinc      4096 Nov 24 19:48 pilot3
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc       533 Nov 25 20:48 boinc_task_state.xml
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc 923424212 Nov 25 21:15 HITS.47533967._002894.pool.root.1
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc      1032 Nov 25 21:17 memory_monitor_summary.json
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc   1516240 Nov 25 21:17 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc   2584084 Nov 25 21:17 log.47533967._002894.job.log.tgz.1
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc      7952 Nov 25 21:19 heartbeat.json
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc        95 Nov 25 21:19 pilot_heartbeat.json
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc      8192 Nov 25 21:20 boinc_mmap_file
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc        29 Nov 25 21:20 wrapper_checkpoint.txt
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc      4884 Nov 25 21:20 pilotlog.txt
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc  12300589 Nov 25 21:20 log.47533967._002894.job.log.1
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc       353 Nov 25 21:20 output.list
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc       620 Nov 25 21:20 runtime_log
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc  14899200 Nov 25 21:20 result.tar.gz
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc      8833 Nov 25 21:20 runtime_log.err
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc       662 Nov 25 21:20 A2mMDmG4ag8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaSHKDmRBRWHo.diag
[2025-11-25 21:20:20] -rw-r--r--. 1 boinc boinc     21423 Nov 25 21:20 stderr.txt
[2025-11-25 21:20:20] HITS file was successfully produced:
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc 923424212 Nov 25 21:15 shared/HITS.pool.root.1
[2025-11-25 21:20:20]  *** Contents of shared directory: ***
[2025-11-25 21:20:20] total 1319396
[2025-11-25 21:20:20] -rw-r--r--. 2 boinc boinc 412121481 Nov 24 19:44 ATLAS.root_0
[2025-11-25 21:20:20] -rw-r--r--. 2 boinc boinc     15847 Nov 24 19:44 start_atlas.sh
[2025-11-25 21:20:20] -rw-r--r--. 2 boinc boinc    590103 Nov 24 19:44 input.tar.gz
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc 923424212 Nov 25 21:15 HITS.pool.root.1
[2025-11-25 21:20:20] -rw-------. 1 boinc boinc  14899200 Nov 25 21:20 result.tar.gz
21:20:21 (30162): run_atlas exited; CPU time 345402.272602
21:20:21 (30162): called boinc_finish(0)

</stderr_txt>
]]>

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