Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
12:12:58 (1132993): wrapper (7.7.26015): starting
12:12:58 (1132993): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 12:12:58] Arguments: --nthreads 8
[2025-11-23 12:12:58] Threads: 8
[2025-11-23 12:12:58] Checking for CVMFS
[2025-11-23 12:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:12:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:12:58] 2.13.3.0 4524 3850 78132 153219 2 81 2901694 4096001 12247 130560 0 551629426 99.998 1097793 710 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-23 12:12:58] CVMFS is ok
[2025-11-23 12:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:12:58] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 12:12:58] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 12:12:58] Further information can be found at the LHC@home message board.
[2025-11-23 12:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:12:58] Checking for apptainer binary...
[2025-11-23 12:12:58] apptainer is not installed, using version from CVMFS
[2025-11-23 12:12:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:12:58] 7950x-linux
[2025-11-23 12:12:58] apptainer works
[2025-11-23 12:12:58] Set ATHENA_PROC_NUMBER=8
[2025-11-23 12:12:58] Set ATHENA_CORE_NUMBER=8
[2025-11-23 12:12:58] Starting ATLAS job with PandaID=6894245253
[2025-11-23 12:12:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc505/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:06:59]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:06:59] 2025-11-24 13:06:07,017 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8693125000004
[2025-11-24 05:06:59] 2025-11-24 13:06:07,021 | INFO     | using path: /var/lib/multiboinc/boinc505/slots/2/PanDA_Pilot-6894245253/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,021 | INFO     | extracted standard info from prmon json
[2025-11-24 05:06:59] 2025-11-24 13:06:07,021 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:06:59] 2025-11-24 13:06:07,021 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:06:59] 2025-11-24 13:06:07,029 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:06:59] 2025-11-24 13:06:07,029 | INFO     | sum of square deviations: 306376888645.0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,042 | INFO     | sum of deviations: 1838189872962.5002
[2025-11-24 05:06:59] 2025-11-24 13:06:07,042 | INFO     | mean x: 1763959169.5
[2025-11-24 05:06:59] 2025-11-24 13:06:07,042 | INFO     | mean y: 2862445.482931727
[2025-11-24 05:06:59] 2025-11-24 13:06:07,042 | INFO     | intersect: -10580481148.202196
[2025-11-24 05:06:59] 2025-11-24 13:06:07,043 | INFO     | chi2: 4.797055342629166
[2025-11-24 05:06:59] 2025-11-24 13:06:07,043 | INFO     | sum of square deviations: 301785900240.0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,059 | INFO     | sum of deviations: 2072319012386.0005
[2025-11-24 05:06:59] 2025-11-24 13:06:07,059 | INFO     | mean x: 1763959017.0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,059 | INFO     | mean y: 2870213.512613522
[2025-11-24 05:06:59] 2025-11-24 13:06:07,059 | INFO     | intersect: -12109974704.330591
[2025-11-24 05:06:59] 2025-11-24 13:06:07,059 | INFO     | chi2: 2.8201613165144934
[2025-11-24 05:06:59] 2025-11-24 13:06:07,059 | INFO     | current chi2=2.8201613165144934 (change=41.210573673122944 %)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,060 | INFO     | sum of square deviations: 297241005722.5
[2025-11-24 05:06:59] 2025-11-24 13:06:07,071 | INFO     | sum of deviations: 2056934786399.999
[2025-11-24 05:06:59] 2025-11-24 13:06:07,071 | INFO     | mean x: 1763958864.5
[2025-11-24 05:06:59] 2025-11-24 13:06:07,071 | INFO     | mean y: 2869696.574036511
[2025-11-24 05:06:59] 2025-11-24 13:06:07,071 | INFO     | intersect: -12203886034.68623
[2025-11-24 05:06:59] 2025-11-24 13:06:07,071 | INFO     | chi2: 2.8126758959164264
[2025-11-24 05:06:59] 2025-11-24 13:06:07,071 | INFO     | current chi2=2.8126758959164264 (change=0.265425263237013 %)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,071 | INFO     | right removable region: 985
[2025-11-24 05:06:59] 2025-11-24 13:06:07,072 | INFO     | sum of square deviations: 301785900240.0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,083 | INFO     | sum of deviations: 1526464340441.0005
[2025-11-24 05:06:59] 2025-11-24 13:06:07,083 | INFO     | mean x: 1763959322.0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,083 | INFO     | mean y: 2872794.240161453
[2025-11-24 05:06:59] 2025-11-24 13:06:07,083 | INFO     | intersect: -8919416155.90673
[2025-11-24 05:06:59] 2025-11-24 13:06:07,083 | INFO     | chi2: 2.2083247659542136
[2025-11-24 05:06:59] 2025-11-24 13:06:07,083 | INFO     | current chi2=2.2083247659542136 (change=53.96499293368843 %)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,084 | INFO     | sum of square deviations: 297241005722.5
[2025-11-24 05:06:59] 2025-11-24 13:06:07,095 | INFO     | sum of deviations: 1451244477697.0002
[2025-11-24 05:06:59] 2025-11-24 13:06:07,095 | INFO     | mean x: 1763959474.5
[2025-11-24 05:06:59] 2025-11-24 13:06:07,095 | INFO     | mean y: 2875317.46653144
[2025-11-24 05:06:59] 2025-11-24 13:06:07,095 | INFO     | intersect: -8609450697.334225
[2025-11-24 05:06:59] 2025-11-24 13:06:07,095 | INFO     | chi2: 2.130394372624094
[2025-11-24 05:06:59] 2025-11-24 13:06:07,095 | INFO     | current chi2=2.130394372624094 (change=3.5289371623039254 %)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,095 | INFO     | left removable region: 20
[2025-11-24 05:06:59] 2025-11-24 13:06:07,096 | INFO     | sum of square deviations: 278650545530.0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,106 | INFO     | sum of deviations: 1573762534593.0005
[2025-11-24 05:06:59] 2025-11-24 13:06:07,106 | INFO     | mean x: 1763959444.0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,106 | INFO     | mean y: 2885932.004145078
[2025-11-24 05:06:59] 2025-11-24 13:06:07,106 | INFO     | intersect: -9959604111.676123
[2025-11-24 05:06:59] 2025-11-24 13:06:07,107 | INFO     | chi2: 0.10271259825853618
[2025-11-24 05:06:59] 2025-11-24 13:06:07,107 | INFO     | current memory leak: 5.65 B/s (using 965 data points, chi2=0.10)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,107 | INFO     | could have reported an average CPU frequency of 3999 MHz (37 samples)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | ..............................
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . Timing measurements:
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . get job = 0 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . initial setup = 3 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . payload setup = 6 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . stage-in = 0 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . payload execution = 60734 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . stage-out = 3 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | . log creation = 0 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,108 | INFO     | ..............................
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | 
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | job summary report
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | --------------------------------------------------
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | PanDA job id: 6894245253
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | task id: 47533967
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | errors: (none)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | pilot state: finished 
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | transexitcode: 0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | exeerrorcode: 0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | exeerrordiag: 
[2025-11-24 05:06:59] 2025-11-24 13:06:07,174 | INFO     | exitcode: 0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | exitmsg: OK
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | cpuconsumptiontime: 135449 s
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | nevents: 1000
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | neventsw: 0
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | pid: 1143594
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | pgrp: 1143594
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | corecount: 8
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | event service: False
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | sizes: {0: 2298597, 1: 2298796, 6: 2299058, 11: 2299086, 60744: 2351736, 60745: 2351735, 60749: 2361732, 60752: 2361788, 60757: 2362034}
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | --------------------------------------------------
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | 
[2025-11-24 05:06:59] 2025-11-24 13:06:07,175 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc505/slots/2
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,195 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,195 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,195 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:06:59] 2025-11-24 13:06:07,195 | INFO     | job 6894245253 has completed (purged errors)
[2025-11-24 05:06:59] 2025-11-24 13:06:07,195 | INFO     | overall cleanup function is called
[2025-11-24 05:06:59] 2025-11-24 13:06:08,212 | INFO     | --- collectZombieJob: --- 10, [1143594]
[2025-11-24 05:06:59] 2025-11-24 13:06:08,213 | INFO     | zombie collector waiting for pid 1143594
[2025-11-24 05:06:59] 2025-11-24 13:06:08,213 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:06:59] 2025-11-24 13:06:08,213 | INFO     | collected zombie processes
[2025-11-24 05:06:59] 2025-11-24 13:06:08,213 | INFO     | will attempt to kill all subprocesses of pid=1143594
[2025-11-24 05:06:59] 2025-11-24 13:06:08,285 | INFO     | PID=1136852 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 05:06:59] 2025-11-24 13:06:08,285 | INFO     | .. there are 14 such processes running
[2025-11-24 05:06:59] 2025-11-24 13:06:08,548 | INFO     | process IDs to be killed: [1143594] (in reverse order)
[2025-11-24 05:06:59] 2025-11-24 13:06:08,674 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:06:59] 2025-11-24 13:06:08,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:06:59] 2025-11-24 13:06:08,680 | INFO     | did not find any defunct processes belonging to 1143594
[2025-11-24 05:06:59] 2025-11-24 13:06:08,685 | INFO     | did not find any defunct processes belonging to 1143594
[2025-11-24 05:06:59] 2025-11-24 13:06:08,685 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:06:59] 2025-11-24 13:06:08,686 | INFO     | ready for new job
[2025-11-24 05:06:59] 2025-11-24 13:06:08,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:06:59] 2025-11-24 13:06:08,689 | INFO     | ***************************************
[2025-11-24 05:06:59] 2025-11-24 13:06:08,689 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:06:59] 2025-11-24 13:06:08,690 | INFO     | ***************************************
[2025-11-24 05:06:59] 2025-11-24 13:06:08,690 | INFO     | 
[2025-11-24 05:06:59] 2025-11-24 13:06:08,691 | INFO     | architecture information:
[2025-11-24 05:06:59] 2025-11-24 13:06:08,694 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:06:59] 2025-11-24 13:06:08,708 | INFO     | cat /etc/os-release:
[2025-11-24 05:06:59] NAME="CentOS Linux"
[2025-11-24 05:06:59] VERSION="7 (Core)"
[2025-11-24 05:06:59] ID="centos"
[2025-11-24 05:06:59] ID_LIKE="rhel fedora"
[2025-11-24 05:06:59] VERSION_ID="7"
[2025-11-24 05:06:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:06:59] ANSI_COLOR="0;31"
[2025-11-24 05:06:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:06:59] HOME_URL="https://www.centos.org/"
[2025-11-24 05:06:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:06:59] 
[2025-11-24 05:06:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:06:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:06:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:06:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:06:59] 
[2025-11-24 05:06:59] 2025-11-24 13:06:08,709 | INFO     | ***************************************
[2025-11-24 05:06:59] 2025-11-24 13:06:09,213 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc505/slots/2
[2025-11-24 05:06:59] 2025-11-24 13:06:09,244 | INFO     | sufficient remaining disk space (179114606592 B)
[2025-11-24 05:06:59] 2025-11-24 13:06:09,244 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:06:59] 2025-11-24 13:06:09,244 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:06:59] 2025-11-24 13:06:09,244 | INFO     | update_server=False
[2025-11-24 05:06:59] 2025-11-24 13:06:09,244 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:06:59] 2025-11-24 13:06:09,244 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 05:06:59] 2025-11-24 13:06:09,244 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:06:59] 2025-11-24 13:06:09,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:06:59] 2025-11-24 13:06:09,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:06:59] 2025-11-24 13:06:09,384 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 05:06:59] 2025-11-24 13:06:09,385 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 05:06:59] 2025-11-24 13:06:09,385 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:06:59] 2025-11-24 13:06:09,385 | INFO     | will abort loop
[2025-11-24 05:06:59] 2025-11-24 13:06:09,493 | INFO     | all data control threads have been joined
[2025-11-24 05:06:59] 2025-11-24 13:06:09,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:06:59] 2025-11-24 13:06:10,248 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:10,264 | INFO     | all payload control threads have been joined
[2025-11-24 05:06:59] 2025-11-24 13:06:10,389 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:10,498 | INFO     | [data] control thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:10,652 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:10,762 | INFO     | all job control threads have been joined
[2025-11-24 05:06:59] 2025-11-24 13:06:10,855 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,004 | INFO     | [job] validate thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,269 | INFO     | [payload] control thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,476 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,498 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,599 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,676 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,735 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:11,767 | INFO     | [job] control thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:12,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:06:59] 2025-11-24 13:06:12,501 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:06:59] 2025-11-24 13:06:13,191 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:16,510 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:19,657 | INFO     | job.realtimelogging is not enabled
[2025-11-24 05:06:59] 2025-11-24 13:06:20,662 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:06:59] 2025-11-24 13:06:53,845 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:06:59] 2025-11-24 13:06:54,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138868192520000)>', '<ExcThread(monitor, started 138866946201344)>']
[2025-11-24 05:06:59] 2025-11-24 13:06:54,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:06:59] 2025-11-24 13:06:54,470 | INFO     | [monitor] control thread has ended
[2025-11-24 05:06:59] 2025-11-24 13:06:59,200 | INFO     | all workflow threads have been joined
[2025-11-24 05:06:59] 2025-11-24 13:06:59,201 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:06:59] 2025-11-24 13:06:59,201 | INFO     | traces error code: 0
[2025-11-24 05:06:59] 2025-11-24 13:06:59,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:06:59] 2025-11-24 13:06:59,295 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:06:59] 2025-11-24 13:06:59,296 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:06:59] 2025-11-24 13:06:59,298 [wrapper] pilotpid: 1136852
[2025-11-24 05:06:59] 2025-11-24 13:06:59,299 [wrapper] Pilot exit status: 0
[2025-11-24 05:06:59] 2025-11-24 13:06:59,310 [wrapper] pandaids: 6894245253
[2025-11-24 05:06:59] 2025-11-24 13:06:59,356 [wrapper] cleanup supervisor_pilot 2510980 1136853
[2025-11-24 05:06:59] 2025-11-24 13:06:59,359 [wrapper] Test setup, not cleaning
[2025-11-24 05:06:59] 2025-11-24 13:06:59,360 [wrapper] apfmon messages muted
[2025-11-24 05:06:59] 2025-11-24 13:06:59,362 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:06:59] 2025-11-24 13:06:59,363 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:06:59]  *** Error codes and diagnostics ***
[2025-11-24 05:06:59]     "exeErrorCode": 0,
[2025-11-24 05:06:59]     "exeErrorDiag": "",
[2025-11-24 05:06:59]     "pilotErrorCode": 0,
[2025-11-24 05:06:59]     "pilotErrorDiag": "",
[2025-11-24 05:06:59]  *** Listing of results directory ***
[2025-11-24 05:06:59] total 1332536
[2025-11-24 05:06:59] -rw-r--r-- 1 root root    576529 Nov 20 16:54 pilot3.tar.gz
[2025-11-24 05:06:59] -rw-r--r-- 1 root root      5112 Nov 20 17:01 queuedata.json
[2025-11-24 05:06:59] -rwx------ 1 4871 1028     36292 Nov 20 17:03 runpilot2-wrapper.sh
[2025-11-24 05:06:59] -rw-r--r-- 1 root root       100 Nov 23 12:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:06:59] -rwxr-xr-x 1 root root      7986 Nov 23 12:12 run_atlas
[2025-11-24 05:06:59] -rw-r--r-- 1 root root       105 Nov 23 12:12 job.xml
[2025-11-24 05:06:59] -rw-r--r-- 1 root root      7073 Nov 23 12:12 init_data.xml
[2025-11-24 05:06:59] -rw-r--r-- 2 root root 407270068 Nov 23 12:12 EVNT.47493127._002071.pool.root.1
[2025-11-24 05:06:59] drwxrwx--x 2 root root      4096 Nov 23 12:12 shared
[2025-11-24 05:06:59] -rw-r--r-- 2 root root    590106 Nov 23 12:12 input.tar.gz
[2025-11-24 05:06:59] -rw-r--r-- 2 root root     15847 Nov 23 12:12 start_atlas.sh
[2025-11-24 05:06:59] -rw-r--r-- 1 root root         0 Nov 23 12:12 boinc_lockfile
[2025-11-24 05:06:59] -rw-r--r-- 1 root root      2784 Nov 23 12:12 pandaJob.out
[2025-11-24 05:06:59] -rw------- 1 root root    989786 Nov 23 12:13 agis_schedconf.cvmfs.json
[2025-11-24 05:06:59] drwxr-xr-x 5  320  320      4096 Nov 23 12:13 pilot3
[2025-11-24 05:06:59] -rw-r--r-- 1 root root       533 Nov 24 05:00 boinc_task_state.xml
[2025-11-24 05:06:59] -rw------- 1 root root 931740498 Nov 24 05:05 HITS.47533967._000427.pool.root.1
[2025-11-24 05:06:59] -rw------- 1 root root      1037 Nov 24 05:05 memory_monitor_summary.json
[2025-11-24 05:06:59] -rw------- 1 root root        95 Nov 24 05:05 pilot_heartbeat.json
[2025-11-24 05:06:59] -rw------- 1 root root   1516227 Nov 24 05:05 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:06:59] -rw------- 1 root root   2146687 Nov 24 05:05 log.47533967._000427.job.log.tgz.1
[2025-11-24 05:06:59] -rw------- 1 root root      8566 Nov 24 05:06 heartbeat.json
[2025-11-24 05:06:59] -rw-r--r-- 1 root root        29 Nov 24 05:06 wrapper_checkpoint.txt
[2025-11-24 05:06:59] -rw-r--r-- 1 root root      8192 Nov 24 05:06 boinc_mmap_file
[2025-11-24 05:06:59] -rw------- 1 root root      4825 Nov 24 05:06 pilotlog.txt
[2025-11-24 05:06:59] -rw------- 1 root root   8646884 Nov 24 05:06 log.47533967._000427.job.log.1
[2025-11-24 05:06:59] -rw------- 1 root root       353 Nov 24 05:06 output.list
[2025-11-24 05:06:59] -rw-r--r-- 1 root root       620 Nov 24 05:06 runtime_log
[2025-11-24 05:06:59] -rw------- 1 root root  10813440 Nov 24 05:06 result.tar.gz
[2025-11-24 05:06:59] -rw------- 1 root root       657 Nov 24 05:06 SATMDmBkUg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLEHKDm5Ql6sn.diag
[2025-11-24 05:06:59] -rw-r--r-- 1 root root      9019 Nov 24 05:06 runtime_log.err
[2025-11-24 05:06:59] -rw-r--r-- 1 root root     21428 Nov 24 05:06 stderr.txt
[2025-11-24 05:06:59] HITS file was successfully produced:
[2025-11-24 05:06:59] -rw------- 1 root root 931740498 Nov 24 05:05 shared/HITS.pool.root.1
[2025-11-24 05:06:59]  *** Contents of shared directory: ***
[2025-11-24 05:06:59] total 1318796
[2025-11-24 05:06:59] -rw-r--r-- 2 root root 407270068 Nov 23 12:12 ATLAS.root_0
[2025-11-24 05:06:59] -rw-r--r-- 2 root root    590106 Nov 23 12:12 input.tar.gz
[2025-11-24 05:06:59] -rw-r--r-- 2 root root     15847 Nov 23 12:12 start_atlas.sh
[2025-11-24 05:06:59] -rw------- 1 root root 931740498 Nov 24 05:05 HITS.pool.root.1
[2025-11-24 05:06:59] -rw------- 1 root root  10813440 Nov 24 05:06 result.tar.gz
05:07:00 (1132993): run_atlas exited; CPU time 135737.078677
05:07:00 (1132993): called boinc_finish(0)

</stderr_txt>
]]>

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