Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:59:27 (19329): wrapper (7.7.26015): starting
20:59:27 (19329): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 20:59:27] Arguments: --nthreads 8
[2025-11-24 20:59:27] Threads: 8
[2025-11-24 20:59:27] Checking for CVMFS
[2025-11-24 20:59:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:59:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:59:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:59:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:59:30] 2.11.2.0 7908 85227 119468 153257 1 85 23834923 25165824 1027 130560 12 25675615 99.884 16267782 1975 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 20:59:30] CVMFS is ok
[2025-11-24 20:59:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:59:30] Checking for apptainer binary...
[2025-11-24 20:59:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:59:30] Running /usr/bin/apptainer --version
[2025-11-24 20:59:30] apptainer version 1.3.2-1.el7
[2025-11-24 20:59:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:59:42] cg-vwn301.simple-grid.lan
[2025-11-24 20:59:42] apptainer works
[2025-11-24 20:59:42] Set ATHENA_PROC_NUMBER=8
[2025-11-24 20:59:42] Set ATHENA_CORE_NUMBER=8
[2025-11-24 20:59:42] Starting ATLAS job with PandaID=6894273721
[2025-11-24 20:59:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:45:21]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:45:21] 2025-11-25 20:44:17,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:45:21] 2025-11-25 20:44:19,129 | INFO     | time since job start (88783s) is within the limit (172800.0s)
[2025-11-25 21:45:21] 2025-11-25 20:44:19,966 | INFO     | monitor loop #5978: job 0:6894273721 is in state 'finished'
[2025-11-25 21:45:21] 2025-11-25 20:44:19,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:45:21] 2025-11-25 20:44:20,383 | INFO     | PID=23088 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:45:21] 2025-11-25 20:44:20,383 | INFO     | .. there are 9 such processes running
[2025-11-25 21:45:21] 2025-11-25 20:44:21,384 | INFO     | time since job start (88785s) is within the limit (172800.0s)
[2025-11-25 21:45:21] 2025-11-25 20:44:22,475 | INFO     | monitor loop #5979: job 0:6894273721 is in state 'finished'
[2025-11-25 21:45:21] 2025-11-25 20:44:22,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:45:21] 2025-11-25 20:44:23,403 | INFO     | time since job start (88787s) is within the limit (172800.0s)
[2025-11-25 21:45:21] 2025-11-25 20:44:24,982 | INFO     | monitor loop #5980: job 0:6894273721 is in state 'finished'
[2025-11-25 21:45:21] 2025-11-25 20:44:24,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:45:21] 2025-11-25 20:44:25,412 | INFO     | time since job start (88789s) is within the limit (172800.0s)
[2025-11-25 21:45:21] 2025-11-25 20:44:27,424 | INFO     | time since job start (88791s) is within the limit (172800.0s)
[2025-11-25 21:45:21] 2025-11-25 20:44:27,488 | INFO     | monitor loop #5981: job 0:6894273721 is in state 'finished'
[2025-11-25 21:45:21] 2025-11-25 20:44:27,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:45:21] 2025-11-25 20:44:27,589 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:45:21] 2025-11-25 20:44:27,591 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-25 21:45:21] 2025-11-25 20:44:27,592 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6894273721/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:45:21] 2025-11-25 20:44:27,593 | INFO     | extracted standard info from prmon json
[2025-11-25 21:45:21] 2025-11-25 20:44:27,593 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:45:21] 2025-11-25 20:44:27,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:45:21] 2025-11-25 20:44:27,632 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:45:21] 2025-11-25 20:44:27,637 | INFO     | sum of square deviations: 935587540718.0182
[2025-11-25 21:45:21] 2025-11-25 20:44:27,747 | INFO     | sum of deviations: 3943815327933.4746
[2025-11-25 21:45:21] 2025-11-25 20:44:27,748 | INFO     | mean x: 1764059273.2200692
[2025-11-25 21:45:21] 2025-11-25 20:44:27,748 | INFO     | mean y: 2822727.6871972317
[2025-11-25 21:45:21] 2025-11-25 20:44:27,748 | INFO     | intersect: -7433278864.440929
[2025-11-25 21:45:21] 2025-11-25 20:44:27,750 | INFO     | chi2: 32.297475731758134
[2025-11-25 21:45:21] 2025-11-25 20:44:27,762 | INFO     | sum of square deviations: 925909720215.549
[2025-11-25 21:45:21] 2025-11-25 20:44:27,827 | INFO     | sum of deviations: 4414546790001.764
[2025-11-25 21:45:21] 2025-11-25 20:44:27,827 | INFO     | mean x: 1764059120.7243056
[2025-11-25 21:45:21] 2025-11-25 20:44:27,828 | INFO     | mean y: 2830144.075
[2025-11-25 21:45:21] 2025-11-25 20:44:27,828 | INFO     | intersect: -8407840311.953808
[2025-11-25 21:45:21] 2025-11-25 20:44:27,829 | INFO     | chi2: 29.153893552487432
[2025-11-25 21:45:21] 2025-11-25 20:44:27,830 | INFO     | current chi2=29.153893552487432 (change=9.733213225018742 %)
[2025-11-25 21:45:21] 2025-11-25 20:44:27,830 | INFO     | right removable region: 1439
[2025-11-25 21:45:21] 2025-11-25 20:44:27,832 | INFO     | sum of square deviations: 925908644785.5487
[2025-11-25 21:45:21] 2025-11-25 20:44:27,915 | INFO     | sum of deviations: 3324829210198.6157
[2025-11-25 21:45:21] 2025-11-25 20:44:27,915 | INFO     | mean x: 1764059425.7243056
[2025-11-25 21:45:21] 2025-11-25 20:44:27,916 | INFO     | mean y: 2832480.611111111
[2025-11-25 21:45:21] 2025-11-25 20:44:27,916 | INFO     | intersect: -6331697756.475956
[2025-11-25 21:45:21] 2025-11-25 20:44:27,918 | INFO     | chi2: 27.173742375275452
[2025-11-25 21:45:21] 2025-11-25 20:44:27,918 | INFO     | current chi2=27.173742375275452 (change=15.864191366028368 %)
[2025-11-25 21:45:21] 2025-11-25 20:44:27,918 | INFO     | left removable region: 10
[2025-11-25 21:45:21] 2025-11-25 20:44:27,920 | INFO     | sum of square deviations: 904851799361.9343
[2025-11-25 21:45:21] 2025-11-25 20:44:28,003 | INFO     | sum of deviations: 3332313923087.1816
[2025-11-25 21:45:21] 2025-11-25 20:44:28,004 | INFO     | mean x: 1764059395.2337298
[2025-11-25 21:45:21] 2025-11-25 20:44:28,004 | INFO     | mean y: 2850668.7389783063
[2025-11-25 21:45:21] 2025-11-25 20:44:28,004 | INFO     | intersect: -6493682451.97242
[2025-11-25 21:45:21] 2025-11-25 20:44:28,006 | INFO     | chi2: 19.04933013472784
[2025-11-25 21:45:21] 2025-11-25 20:44:28,006 | INFO     | current memory leak: 3.68 B/s (using 1429 data points, chi2=19.05)
[2025-11-25 21:45:21] 2025-11-25 20:44:28,008 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | ..............................
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . Timing measurements:
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . get job = 0 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . initial setup = 10 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . payload setup = 182 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . stage-in = 0 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . payload execution = 88307 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . stage-out = 6 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,009 | INFO     | . log creation = 2 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,010 | INFO     | ..............................
[2025-11-25 21:45:21] 2025-11-25 20:44:28,115 | INFO     | 
[2025-11-25 21:45:21] 2025-11-25 20:44:28,115 | INFO     | job summary report
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | --------------------------------------------------
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | PanDA job id: 6894273721
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | task id: 47533967
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | errors: (none)
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | pilot state: finished 
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | transexitcode: 0
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | exeerrorcode: 0
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | exeerrordiag: 
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | exitcode: 0
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | exitmsg: OK
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | cpuconsumptiontime: 340663 s
[2025-11-25 21:45:21] 2025-11-25 20:44:28,116 | INFO     | nevents: 1000
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | neventsw: 0
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | pid: 29538
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | pgrp: 29538
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | corecount: 8
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | event service: False
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 13: 2284366, 23: 2284422, 34: 2284450, 45: 2284606, 55: 2284634, 66: 2284662, 77: 2284690, 88: 2284746, 98: 2285344, 88
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | --------------------------------------------------
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | 
[2025-11-25 21:45:21] 2025-11-25 20:44:28,117 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-25 21:45:21] 2025-11-25 20:44:28,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:45:21] 2025-11-25 20:44:28,428 | INFO     | job 6894273721 has completed (purged errors)
[2025-11-25 21:45:21] 2025-11-25 20:44:28,428 | INFO     | overall cleanup function is called
[2025-11-25 21:45:21] 2025-11-25 20:44:29,445 | INFO     | --- collectZombieJob: --- 10, [29538]
[2025-11-25 21:45:21] 2025-11-25 20:44:29,446 | INFO     | zombie collector waiting for pid 29538
[2025-11-25 21:45:21] 2025-11-25 20:44:29,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:45:21] 2025-11-25 20:44:29,446 | INFO     | collected zombie processes
[2025-11-25 21:45:21] 2025-11-25 20:44:29,446 | INFO     | will attempt to kill all subprocesses of pid=29538
[2025-11-25 21:45:21] 2025-11-25 20:44:29,581 | INFO     | process IDs to be killed: [29538] (in reverse order)
[2025-11-25 21:45:21] 2025-11-25 20:44:30,453 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:45:21] 2025-11-25 20:44:30,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:45:21] 2025-11-25 20:44:30,457 | INFO     | did not find any defunct processes belonging to 29538
[2025-11-25 21:45:21] 2025-11-25 20:44:30,459 | INFO     | did not find any defunct processes belonging to 29538
[2025-11-25 21:45:21] 2025-11-25 20:44:30,518 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:45:21] 2025-11-25 20:44:30,518 | INFO     | ready for new job
[2025-11-25 21:45:21] 2025-11-25 20:44:30,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:45:21] 2025-11-25 20:44:30,525 | INFO     | ***************************************
[2025-11-25 21:45:21] 2025-11-25 20:44:30,526 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:45:21] 2025-11-25 20:44:30,526 | INFO     | ***************************************
[2025-11-25 21:45:21] 2025-11-25 20:44:30,526 | INFO     | 
[2025-11-25 21:45:21] 2025-11-25 20:44:30,526 | INFO     | pilot is running in a VM
[2025-11-25 21:45:21] 2025-11-25 20:44:30,527 | INFO     | architecture information:
[2025-11-25 21:45:21] 2025-11-25 20:44:30,538 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:45:21] 2025-11-25 20:44:30,877 | INFO     | cat /etc/os-release:
[2025-11-25 21:45:21] NAME="CentOS Linux"
[2025-11-25 21:45:21] VERSION="7 (Core)"
[2025-11-25 21:45:21] ID="centos"
[2025-11-25 21:45:21] ID_LIKE="rhel fedora"
[2025-11-25 21:45:21] VERSION_ID="7"
[2025-11-25 21:45:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:45:21] ANSI_COLOR="0;31"
[2025-11-25 21:45:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:45:21] HOME_URL="https://www.centos.org/"
[2025-11-25 21:45:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:45:21] 
[2025-11-25 21:45:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:45:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:45:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:45:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:45:21] 
[2025-11-25 21:45:21] 2025-11-25 20:44:30,878 | INFO     | ***************************************
[2025-11-25 21:45:21] 2025-11-25 20:44:31,382 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-25 21:45:21] 2025-11-25 20:44:31,661 | INFO     | sufficient remaining disk space (494954086400 B)
[2025-11-25 21:45:21] 2025-11-25 20:44:31,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:45:21] 2025-11-25 20:44:31,662 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:45:21] 2025-11-25 20:44:31,662 | INFO     | update_server=False
[2025-11-25 21:45:21] 2025-11-25 20:44:31,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:45:21] 2025-11-25 20:44:31,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:45:21] 2025-11-25 20:44:31,664 | INFO     | aborting loop
[2025-11-25 21:45:21] 2025-11-25 20:44:31,818 | INFO     | all data control threads have been joined
[2025-11-25 21:45:21] 2025-11-25 20:44:32,117 | INFO     | all job control threads have been joined
[2025-11-25 21:45:21] 2025-11-25 20:44:32,529 | INFO     | all payload control threads have been joined
[2025-11-25 21:45:21] 2025-11-25 20:44:32,669 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:32,670 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:32,712 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:32,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:45:21] 2025-11-25 20:44:32,813 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:32,824 | INFO     | [data] control thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:32,873 | INFO     | [job] validate thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:33,124 | INFO     | [job] control thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:33,132 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:45:21] 2025-11-25 20:44:33,317 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:33,382 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:33,412 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:33,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:45:21] 2025-11-25 20:44:33,535 | INFO     | [payload] control thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:33,541 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:34,073 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:34,138 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:34,810 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:44:37,430 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:45:21] 2025-11-25 20:45:00,613 | INFO     | PID=23088 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:45:21] 2025-11-25 20:45:00,613 | INFO     | .. there are 9 such processes running
[2025-11-25 21:45:21] 2025-11-25 20:45:00,614 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:45:21] 2025-11-25 20:45:00,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:45:21] 2025-11-25 20:45:00,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:45:21] 2025-11-25 20:45:10,104 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:45:21] 2025-11-25 20:45:11,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140571196405568)>', '<ExcThread(monitor, started 140570747971328)>']
[2025-11-25 21:45:21] 2025-11-25 20:45:12,683 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:45:21] 2025-11-25 20:45:12,684 | INFO     | [monitor] control thread has ended
[2025-11-25 21:45:21] 2025-11-25 20:45:16,745 | INFO     | all workflow threads have been joined
[2025-11-25 21:45:21] 2025-11-25 20:45:16,745 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:45:21] 2025-11-25 20:45:16,745 | INFO     | traces error code: 0
[2025-11-25 21:45:21] 2025-11-25 20:45:16,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:45:21] 2025-11-25 20:45:17,192 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:45:21] 2025-11-25 20:45:17,269 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:45:21] 2025-11-25 20:45:17,379 [wrapper] pilotpid: 23088
[2025-11-25 21:45:21] 2025-11-25 20:45:17,453 [wrapper] Pilot exit status: 0
[2025-11-25 21:45:21] 2025-11-25 20:45:17,809 [wrapper] pandaids: 6894273721
[2025-11-25 21:45:21] 2025-11-25 20:45:18,783 [wrapper] cleanup supervisor_pilot 30691 23089
[2025-11-25 21:45:21] 2025-11-25 20:45:18,840 [wrapper] Test setup, not cleaning
[2025-11-25 21:45:21] 2025-11-25 20:45:18,883 [wrapper] apfmon messages muted
[2025-11-25 21:45:21] 2025-11-25 20:45:18,929 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:45:21] 2025-11-25 20:45:18,977 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:45:21]  *** Error codes and diagnostics ***
[2025-11-25 21:45:21]     "exeErrorCode": 0,
[2025-11-25 21:45:21]     "exeErrorDiag": "",
[2025-11-25 21:45:21]     "pilotErrorCode": 0,
[2025-11-25 21:45:21]     "pilotErrorDiag": "",
[2025-11-25 21:45:21]  *** Listing of results directory ***
[2025-11-25 21:45:21] total 1326840
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc    576529 Nov 21 08:07 pilot3.tar.gz
[2025-11-25 21:45:21] -rwx------. 1 boinc boinc     36292 Nov 21 08:23 runpilot2-wrapper.sh
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc      5112 Nov 21 08:23 queuedata.json
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc       100 Nov 24 20:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:45:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 20:59 run_atlas
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc       105 Nov 24 20:59 job.xml
[2025-11-25 21:45:21] -rw-r--r--. 2 boinc boinc 408796377 Nov 24 20:59 EVNT.47493127._002297.pool.root.1
[2025-11-25 21:45:21] -rw-r--r--. 2 boinc boinc     15847 Nov 24 20:59 start_atlas.sh
[2025-11-25 21:45:21] drwxrwx--x. 2 boinc boinc        68 Nov 24 20:59 shared
[2025-11-25 21:45:21] -rw-r--r--. 2 boinc boinc    590095 Nov 24 20:59 input.tar.gz
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc      6391 Nov 24 20:59 init_data.xml
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc         0 Nov 24 20:59 boinc_lockfile
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc      2786 Nov 24 20:59 pandaJob.out
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc    991801 Nov 24 21:04 agis_schedconf.cvmfs.json
[2025-11-25 21:45:21] drwx------. 5 boinc boinc      4096 Nov 24 21:04 pilot3
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc       533 Nov 25 21:12 boinc_task_state.xml
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc 917186543 Nov 25 21:41 HITS.47533967._002690.pool.root.1
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc      1032 Nov 25 21:42 memory_monitor_summary.json
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc   1516240 Nov 25 21:42 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc   2528088 Nov 25 21:42 log.47533967._002690.job.log.tgz.1
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc      7941 Nov 25 21:44 heartbeat.json
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc      8192 Nov 25 21:44 boinc_mmap_file
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc        29 Nov 25 21:44 wrapper_checkpoint.txt
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc        95 Nov 25 21:45 pilot_heartbeat.json
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc      4884 Nov 25 21:45 pilotlog.txt
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc  11873677 Nov 25 21:45 log.47533967._002690.job.log.1
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc       353 Nov 25 21:45 output.list
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc       620 Nov 25 21:45 runtime_log
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc  14417920 Nov 25 21:45 result.tar.gz
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc       662 Nov 25 21:45 wQ1MDmEfag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcBJKDmsrgvam.diag
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc      8817 Nov 25 21:45 runtime_log.err
[2025-11-25 21:45:21] -rw-r--r--. 1 boinc boinc     21525 Nov 25 21:45 stderr.txt
[2025-11-25 21:45:21] HITS file was successfully produced:
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc 917186543 Nov 25 21:41 shared/HITS.pool.root.1
[2025-11-25 21:45:21]  *** Contents of shared directory: ***
[2025-11-25 21:45:21] total 1309584
[2025-11-25 21:45:21] -rw-r--r--. 2 boinc boinc 408796377 Nov 24 20:59 ATLAS.root_0
[2025-11-25 21:45:21] -rw-r--r--. 2 boinc boinc     15847 Nov 24 20:59 start_atlas.sh
[2025-11-25 21:45:21] -rw-r--r--. 2 boinc boinc    590095 Nov 24 20:59 input.tar.gz
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc 917186543 Nov 25 21:41 HITS.pool.root.1
[2025-11-25 21:45:21] -rw-------. 1 boinc boinc  14417920 Nov 25 21:45 result.tar.gz
21:45:22 (19329): run_atlas exited; CPU time 341054.125005
21:45:22 (19329): called boinc_finish(0)

</stderr_txt>
]]>

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