Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:03:56 (27668): wrapper (7.7.26015): starting
19:03:56 (27668): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 19:03:56] Arguments: --nthreads 8
[2025-11-21 19:03:56] Threads: 8
[2025-11-21 19:03:56] Checking for CVMFS
[2025-11-21 19:03:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 19:03:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 19:03:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 19:03:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 19:03:56] 2.11.2.0 2790 63937 83964 153152 1 81 13562504 20275200 1 130560 0 16997777 99.934 3034107 27732 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 19:03:56] CVMFS is ok
[2025-11-21 19:03:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 19:03:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 19:03:56] Further information can be found at the LHC@home message board.
[2025-11-21 19:03:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 19:03:56] Checking for apptainer binary...
[2025-11-21 19:03:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 19:03:56] Running /usr/bin/apptainer --version
[2025-11-21 19:03:56] apptainer version 1.3.2-1.el7
[2025-11-21 19:03:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 19:03:58] c-204-12.aglt2.org
[2025-11-21 19:03:58] apptainer works
[2025-11-21 19:03:58] Set ATHENA_PROC_NUMBER=8
[2025-11-21 19:03:58] Set ATHENA_CORE_NUMBER=8
[2025-11-21 19:03:58] Starting ATLAS job with PandaID=6894274104
[2025-11-21 19:03:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:09:38 (5093): wrapper (7.7.26015): starting
21:09:38 (5093): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:09:38] Arguments: --nthreads 8
[2025-11-21 21:09:38] Threads: 8
[2025-11-21 21:09:38] This job has been restarted, cleaning up previous attempt
[2025-11-21 21:09:38] Checking for CVMFS
[2025-11-21 21:09:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:09:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:09:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:09:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:09:38] 2.11.2.0 31887 9 29428 153154 2 1 13696752 20275201 1 130560 0 18 100.000 1 1000 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 21:09:38] CVMFS is ok
[2025-11-21 21:09:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:09:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 21:09:38] Further information can be found at the LHC@home message board.
[2025-11-21 21:09:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:09:38] Checking for apptainer binary...
[2025-11-21 21:09:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:09:38] Running /usr/bin/apptainer --version
[2025-11-21 21:09:38] apptainer version 1.3.2-1.el7
[2025-11-21 21:09:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:09:40] c-204-12.aglt2.org
[2025-11-21 21:09:40] apptainer works
[2025-11-21 21:09:40] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:09:40] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:09:40] Starting ATLAS job with PandaID=6894274104
[2025-11-21 21:09:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 09:43:18]  *** The last 200 lines of the pilot log: ***
[2025-11-22 09:43:18] 2025-11-22 14:42:22,201 | INFO     | time since job start (45145s) is within the limit (172800.0s)
[2025-11-22 09:43:18] 2025-11-22 14:42:22,251 | INFO     | monitor loop #3325: job 0:6894274104 is in state 'finished'
[2025-11-22 09:43:18] 2025-11-22 14:42:22,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,206 | INFO     | time since job start (45147s) is within the limit (172800.0s)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,271 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 09:43:18] 2025-11-22 14:42:24,274 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-22 09:43:18] 2025-11-22 14:42:24,276 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894274104/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,277 | INFO     | extracted standard info from prmon json
[2025-11-22 09:43:18] 2025-11-22 14:42:24,277 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 09:43:18] 2025-11-22 14:42:24,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 09:43:18] 2025-11-22 14:42:24,289 | INFO     | fitting pss+swap vs Time
[2025-11-22 09:43:18] 2025-11-22 14:42:24,290 | INFO     | sum of square deviations: 125653004457.48535
[2025-11-22 09:43:18] 2025-11-22 14:42:24,304 | INFO     | sum of deviations: 894546893370.5015
[2025-11-22 09:43:18] 2025-11-22 14:42:24,304 | INFO     | mean x: 1763799970.068919
[2025-11-22 09:43:18] 2025-11-22 14:42:24,304 | INFO     | mean y: 2861802.5783783784
[2025-11-22 09:43:18] 2025-11-22 14:42:24,305 | INFO     | intersect: -12553955207.60289
[2025-11-22 09:43:18] 2025-11-22 14:42:24,306 | INFO     | chi2: 5.931452306925026
[2025-11-22 09:43:18] 2025-11-22 14:42:24,307 | INFO     | sum of square deviations: 123123280775.85602
[2025-11-22 09:43:18] 2025-11-22 14:42:24,318 | INFO     | sum of deviations: 1137135022863.4243
[2025-11-22 09:43:18] 2025-11-22 14:42:24,318 | INFO     | mean x: 1763799817.5727892
[2025-11-22 09:43:18] 2025-11-22 14:42:24,318 | INFO     | mean y: 2876420.431292517
[2025-11-22 09:43:18] 2025-11-22 14:42:24,318 | INFO     | intersect: -16287126032.747675
[2025-11-22 09:43:18] 2025-11-22 14:42:24,319 | INFO     | chi2: 2.8455693902107213
[2025-11-22 09:43:18] 2025-11-22 14:42:24,319 | INFO     | current chi2=2.8455693902107213 (change=52.02575620664618 %)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,320 | INFO     | sum of square deviations: 120627743781.7042
[2025-11-22 09:43:18] 2025-11-22 14:42:24,331 | INFO     | sum of deviations: 1213771631251.1074
[2025-11-22 09:43:18] 2025-11-22 14:42:24,331 | INFO     | mean x: 1763799665.0767124
[2025-11-22 09:43:18] 2025-11-22 14:42:24,331 | INFO     | mean y: 2881094.694520548
[2025-11-22 09:43:18] 2025-11-22 14:42:24,331 | INFO     | intersect: -17744694459.354965
[2025-11-22 09:43:18] 2025-11-22 14:42:24,332 | INFO     | chi2: 2.3667177139344298
[2025-11-22 09:43:18] 2025-11-22 14:42:24,332 | INFO     | current chi2=2.3667177139344298 (change=16.82797396976608 %)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,332 | INFO     | right removable region: 729
[2025-11-22 09:43:18] 2025-11-22 14:42:24,333 | INFO     | sum of square deviations: 123123023965.85605
[2025-11-22 09:43:18] 2025-11-22 14:42:24,345 | INFO     | sum of deviations: 699170572358.724
[2025-11-22 09:43:18] 2025-11-22 14:42:24,345 | INFO     | mean x: 1763800122.5727892
[2025-11-22 09:43:18] 2025-11-22 14:42:24,345 | INFO     | mean y: 2873560.276190476
[2025-11-22 09:43:18] 2025-11-22 14:42:24,345 | INFO     | intersect: -10013101531.170471
[2025-11-22 09:43:18] 2025-11-22 14:42:24,346 | INFO     | chi2: 3.850599989179335
[2025-11-22 09:43:18] 2025-11-22 14:42:24,346 | INFO     | current chi2=3.850599989179335 (change=35.08166651388693 %)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,347 | INFO     | sum of square deviations: 120627319832.0056
[2025-11-22 09:43:18] 2025-11-22 14:42:24,358 | INFO     | sum of deviations: 643075581580.9728
[2025-11-22 09:43:18] 2025-11-22 14:42:24,358 | INFO     | mean x: 1763800275.0739727
[2025-11-22 09:43:18] 2025-11-22 14:42:24,359 | INFO     | mean y: 2876987.6301369863
[2025-11-22 09:43:18] 2025-11-22 14:42:24,359 | INFO     | intersect: -9400108084.619862
[2025-11-22 09:43:18] 2025-11-22 14:42:24,359 | INFO     | chi2: 3.7670000068891247
[2025-11-22 09:43:18] 2025-11-22 14:42:24,360 | INFO     | current chi2=3.7670000068891247 (change=2.1710897658841954 %)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,360 | INFO     | left removable region: 20
[2025-11-22 09:43:18] 2025-11-22 14:42:24,361 | INFO     | sum of square deviations: 110513796186.08734
[2025-11-22 09:43:18] 2025-11-22 14:42:24,371 | INFO     | sum of deviations: 877832470084.805
[2025-11-22 09:43:18] 2025-11-22 14:42:24,371 | INFO     | mean x: 1763800244.5853314
[2025-11-22 09:43:18] 2025-11-22 14:42:24,371 | INFO     | mean y: 2902110.0197461215
[2025-11-22 09:43:18] 2025-11-22 14:42:24,371 | INFO     | intersect: -14007304568.912924
[2025-11-22 09:43:18] 2025-11-22 14:42:24,372 | INFO     | chi2: 0.12440031238900727
[2025-11-22 09:43:18] 2025-11-22 14:42:24,372 | INFO     | current memory leak: 7.94 B/s (using 709 data points, chi2=0.12)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | could have reported an average CPU frequency of 2151 MHz (28 samples)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | ..............................
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | . Timing measurements:
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | . get job = 0 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | . initial setup = 1 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | . payload setup = 9 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | . stage-in = 0 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,373 | INFO     | . payload execution = 45102 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,374 | INFO     | . stage-out = 3 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,374 | INFO     | . log creation = 0 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,374 | INFO     | ..............................
[2025-11-22 09:43:18] 2025-11-22 14:42:24,750 | INFO     | 
[2025-11-22 09:43:18] 2025-11-22 14:42:24,750 | INFO     | job summary report
[2025-11-22 09:43:18] 2025-11-22 14:42:24,751 | INFO     | --------------------------------------------------
[2025-11-22 09:43:18] 2025-11-22 14:42:24,751 | INFO     | PanDA job id: 6894274104
[2025-11-22 09:43:18] 2025-11-22 14:42:24,751 | INFO     | task id: 47533967
[2025-11-22 09:43:18] 2025-11-22 14:42:24,751 | INFO     | errors: (none)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 09:43:18] 2025-11-22 14:42:24,752 | INFO     | pilot state: finished 
[2025-11-22 09:43:18] 2025-11-22 14:42:24,752 | INFO     | transexitcode: 0
[2025-11-22 09:43:18] 2025-11-22 14:42:24,752 | INFO     | exeerrorcode: 0
[2025-11-22 09:43:18] 2025-11-22 14:42:24,752 | INFO     | exeerrordiag: 
[2025-11-22 09:43:18] 2025-11-22 14:42:24,752 | INFO     | exitcode: 0
[2025-11-22 09:43:18] 2025-11-22 14:42:24,752 | INFO     | exitmsg: OK
[2025-11-22 09:43:18] 2025-11-22 14:42:24,753 | INFO     | cpuconsumptiontime: 349009 s
[2025-11-22 09:43:18] 2025-11-22 14:42:24,753 | INFO     | nevents: 1000
[2025-11-22 09:43:18] 2025-11-22 14:42:24,753 | INFO     | neventsw: 0
[2025-11-22 09:43:18] 2025-11-22 14:42:24,753 | INFO     | pid: 16437
[2025-11-22 09:43:18] 2025-11-22 14:42:24,753 | INFO     | pgrp: 16437
[2025-11-22 09:43:18] 2025-11-22 14:42:24,753 | INFO     | corecount: 8
[2025-11-22 09:43:18] 2025-11-22 14:42:24,754 | INFO     | event service: False
[2025-11-22 09:43:18] 2025-11-22 14:42:24,754 | INFO     | sizes: {0: 2298807, 6: 2299069, 11: 2299097, 45116: 2345107, 45120: 2354101, 45122: 2354157, 45130: 2354531}
[2025-11-22 09:43:18] 2025-11-22 14:42:24,754 | INFO     | --------------------------------------------------
[2025-11-22 09:43:18] 2025-11-22 14:42:24,754 | INFO     | 
[2025-11-22 09:43:18] 2025-11-22 14:42:24,754 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 09:43:18] 2025-11-22 14:42:24,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,786 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,786 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,786 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,786 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,787 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,788 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 09:43:18] 2025-11-22 14:42:24,790 | INFO     | job 6894274104 has completed (purged errors)
[2025-11-22 09:43:18] 2025-11-22 14:42:24,790 | INFO     | overall cleanup function is called
[2025-11-22 09:43:18] 2025-11-22 14:42:25,806 | INFO     | --- collectZombieJob: --- 10, [16437]
[2025-11-22 09:43:18] 2025-11-22 14:42:25,806 | INFO     | zombie collector waiting for pid 16437
[2025-11-22 09:43:18] 2025-11-22 14:42:25,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 09:43:18] 2025-11-22 14:42:25,807 | INFO     | collected zombie processes
[2025-11-22 09:43:18] 2025-11-22 14:42:25,807 | INFO     | will attempt to kill all subprocesses of pid=16437
[2025-11-22 09:43:18] 2025-11-22 14:42:25,896 | INFO     | process IDs to be killed: [16437] (in reverse order)
[2025-11-22 09:43:18] 2025-11-22 14:42:25,950 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 09:43:18] 2025-11-22 14:42:25,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 09:43:18] 2025-11-22 14:42:25,955 | INFO     | did not find any defunct processes belonging to 16437
[2025-11-22 09:43:18] 2025-11-22 14:42:25,958 | INFO     | did not find any defunct processes belonging to 16437
[2025-11-22 09:43:18] 2025-11-22 14:42:25,960 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 09:43:18] 2025-11-22 14:42:25,961 | INFO     | ready for new job
[2025-11-22 09:43:18] 2025-11-22 14:42:25,961 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 09:43:18] 2025-11-22 14:42:25,964 | INFO     | ***************************************
[2025-11-22 09:43:18] 2025-11-22 14:42:25,964 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 09:43:18] 2025-11-22 14:42:25,964 | INFO     | ***************************************
[2025-11-22 09:43:18] 2025-11-22 14:42:25,964 | INFO     | 
[2025-11-22 09:43:18] 2025-11-22 14:42:25,965 | INFO     | architecture information:
[2025-11-22 09:43:18] 2025-11-22 14:42:25,966 | INFO     | executing command: cat /etc/os-release
[2025-11-22 09:43:18] 2025-11-22 14:42:25,985 | INFO     | cat /etc/os-release:
[2025-11-22 09:43:18] NAME="CentOS Linux"
[2025-11-22 09:43:18] VERSION="7 (Core)"
[2025-11-22 09:43:18] ID="centos"
[2025-11-22 09:43:18] ID_LIKE="rhel fedora"
[2025-11-22 09:43:18] VERSION_ID="7"
[2025-11-22 09:43:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 09:43:18] ANSI_COLOR="0;31"
[2025-11-22 09:43:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 09:43:18] HOME_URL="https://www.centos.org/"
[2025-11-22 09:43:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 09:43:18] 
[2025-11-22 09:43:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 09:43:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 09:43:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 09:43:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 09:43:18] 
[2025-11-22 09:43:18] 2025-11-22 14:42:25,985 | INFO     | ***************************************
[2025-11-22 09:43:18] 2025-11-22 14:42:26,487 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 09:43:18] 2025-11-22 14:42:26,508 | INFO     | sufficient remaining disk space (17479761920 B)
[2025-11-22 09:43:18] 2025-11-22 14:42:26,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 09:43:18] 2025-11-22 14:42:26,509 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 09:43:18] 2025-11-22 14:42:26,509 | INFO     | update_server=False
[2025-11-22 09:43:18] 2025-11-22 14:42:26,509 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 09:43:18] 2025-11-22 14:42:26,509 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:43:18] 2025-11-22 14:42:26,510 | INFO     | aborting loop
[2025-11-22 09:43:18] 2025-11-22 14:42:26,703 | INFO     | all data control threads have been joined
[2025-11-22 09:43:18] 2025-11-22 14:42:27,213 | INFO     | all payload control threads have been joined
[2025-11-22 09:43:18] 2025-11-22 14:42:27,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 09:43:18] 2025-11-22 14:42:27,373 | INFO     | all job control threads have been joined
[2025-11-22 09:43:18] 2025-11-22 14:42:27,515 | INFO     | [job] retrieve thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:27,515 | INFO     | [job] job monitor thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:27,546 | INFO     | [payload] failed_post thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:27,708 | INFO     | [data] control thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:27,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 09:43:18] 2025-11-22 14:42:27,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,066 | INFO     | [payload] validate_post thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,112 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,120 | INFO     | [data] copytool_in thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,219 | INFO     | [payload] control thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,251 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,266 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,307 | INFO     | [job] validate thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:28,378 | INFO     | [job] control thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:29,474 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:43:18] 2025-11-22 14:42:29,875 | INFO     | [data] copytool_out thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:30,480 | INFO     | [job] queue monitor thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:31,322 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 09:43:18] 2025-11-22 14:42:57,428 | INFO     | PID=8863 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 09:43:18] 2025-11-22 14:42:57,429 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 09:43:18] 2025-11-22 14:42:57,429 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 09:43:18] 2025-11-22 14:42:57,429 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 09:43:18] 2025-11-22 14:43:11,895 | INFO     | [monitor] cgroup control has ended
[2025-11-22 09:43:18] 2025-11-22 14:43:13,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653534762816)>', '<ExcThread(monitor, started 140652587247360)>']
[2025-11-22 09:43:18] 2025-11-22 14:43:13,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 09:43:18] 2025-11-22 14:43:13,506 | INFO     | [monitor] control thread has ended
[2025-11-22 09:43:18] 2025-11-22 14:43:18,361 | INFO     | all workflow threads have been joined
[2025-11-22 09:43:18] 2025-11-22 14:43:18,362 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 09:43:18] 2025-11-22 14:43:18,362 | INFO     | traces error code: 0
[2025-11-22 09:43:18] 2025-11-22 14:43:18,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 09:43:18] 2025-11-22 14:43:18,463 [wrapper] ==== pilot stdout END ====
[2025-11-22 09:43:18] 2025-11-22 14:43:18,468 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 09:43:18] 2025-11-22 14:43:18,474 [wrapper] pilotpid: 8863
[2025-11-22 09:43:18] 2025-11-22 14:43:18,478 [wrapper] Pilot exit status: 0
[2025-11-22 09:43:18] 2025-11-22 14:43:18,495 [wrapper] pandaids: 6894274104 6894274104
[2025-11-22 09:43:18] 2025-11-22 14:43:18,559 [wrapper] cleanup supervisor_pilot  4093 8864
[2025-11-22 09:43:18] 2025-11-22 14:43:18,564 [wrapper] Test setup, not cleaning
[2025-11-22 09:43:18] 2025-11-22 14:43:18,570 [wrapper] apfmon messages muted
[2025-11-22 09:43:18] 2025-11-22 14:43:18,574 [wrapper] ==== wrapper stdout END ====
[2025-11-22 09:43:18] 2025-11-22 14:43:18,579 [wrapper] ==== wrapper stderr END ====
[2025-11-22 09:43:18]  *** Error codes and diagnostics ***
[2025-11-22 09:43:18]     "exeErrorCode": 0,
[2025-11-22 09:43:18]     "exeErrorDiag": "",
[2025-11-22 09:43:18]     "pilotErrorCode": 0,
[2025-11-22 09:43:18]     "pilotErrorDiag": "",
[2025-11-22 09:43:18]  *** Listing of results directory ***
[2025-11-22 09:43:18] total 1710268
[2025-11-22 09:43:18] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 02:07 pilot3.tar.gz
[2025-11-22 09:43:18] -rwx------ 1 boincer umatlas     36292 Nov 21 02:20 runpilot2-wrapper.sh
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 02:20 queuedata.json
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas       100 Nov 21 19:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 09:43:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 19:03 run_atlas
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas       105 Nov 21 19:03 job.xml
[2025-11-22 09:43:18] -rw-r--r-- 3 boincer umatlas 408831677 Nov 21 19:03 EVNT.47493127._002299.pool.root.1
[2025-11-22 09:43:18] -rw-r--r-- 3 boincer umatlas 408831677 Nov 21 19:03 ATLAS.root_0
[2025-11-22 09:43:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 19:03 start_atlas.sh
[2025-11-22 09:43:18] drwxrwx--x 2 boincer umatlas      4096 Nov 21 19:03 shared
[2025-11-22 09:43:18] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 19:03 input.tar.gz
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas         0 Nov 21 19:03 boinc_lockfile
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas      2786 Nov 21 21:09 pandaJob.out
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas        57 Nov 21 21:09 setup.sh.local
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas    989798 Nov 21 21:09 agis_schedconf.cvmfs.json
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas       532 Nov 22 09:31 boinc_task_state.xml
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas      5911 Nov 22 09:37 init_data.xml
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas 913273625 Nov 22 09:41 HITS.47533967._002707.pool.root.1
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas        96 Nov 22 09:42 pilot_heartbeat.json
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas      1062 Nov 22 09:42 memory_monitor_summary.json
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas   1526164 Nov 22 09:42 agis_ddmendpoints.agis.ALL.json
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas   1992099 Nov 22 09:42 log.47533967._002707.job.log.tgz.1
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas      8660 Nov 22 09:42 heartbeat.json
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 09:43 boinc_mmap_file
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas        29 Nov 22 09:43 wrapper_checkpoint.txt
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas      4745 Nov 22 09:43 pilotlog.txt
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas   6231953 Nov 22 09:43 log.47533967._002707.job.log.1
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas       353 Nov 22 09:43 output.list
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas       620 Nov 22 09:43 runtime_log
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas   8243200 Nov 22 09:43 result.tar.gz
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas       793 Nov 22 09:43 NupMDmGcag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBBJKDmyfOiam.diag
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas      9428 Nov 22 09:43 runtime_log.err
[2025-11-22 09:43:18] -rw-r--r-- 1 boincer umatlas     23436 Nov 22 09:43 stderr.txt
[2025-11-22 09:43:18] HITS file was successfully produced:
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas 913273625 Nov 22 09:41 shared/HITS.pool.root.1
[2025-11-22 09:43:18]  *** Contents of shared directory: ***
[2025-11-22 09:43:18] total 1299776
[2025-11-22 09:43:18] -rw-r--r-- 3 boincer umatlas 408831677 Nov 21 19:03 ATLAS.root_0
[2025-11-22 09:43:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 19:03 start_atlas.sh
[2025-11-22 09:43:18] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 19:03 input.tar.gz
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas 913273625 Nov 22 09:41 HITS.pool.root.1
[2025-11-22 09:43:18] -rw------- 1 boincer umatlas   8243200 Nov 22 09:43 result.tar.gz
09:43:19 (5093): run_atlas exited; CPU time 344915.236841
09:43:19 (5093): called boinc_finish(0)

</stderr_txt>
]]>

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