Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
22:43:01 (82412): wrapper (7.7.26015): starting
22:43:01 (82412): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:43:01] Arguments: --nthreads 8
[2025-11-22 22:43:01] Threads: 8
[2025-11-22 22:43:01] Checking for CVMFS
[2025-11-22 22:43:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:43:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:43:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:43:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:43:02] 2.13.3.0 4524 3040 65848 153199 3 82 1555146 4096001 5652 130560 0 456031496 99.999 612588 825 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-22 22:43:02] CVMFS is ok
[2025-11-22 22:43:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:43:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 22:43:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 22:43:02] Further information can be found at the LHC@home message board.
[2025-11-22 22:43:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:43:02] Checking for apptainer binary...
[2025-11-22 22:43:02] apptainer is not installed, using version from CVMFS
[2025-11-22 22:43:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:43:02] 7950x-linux
[2025-11-22 22:43:02] apptainer works
[2025-11-22 22:43:02] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:43:02] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:43:02] Starting ATLAS job with PandaID=6894270951
[2025-11-22 22:43:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc505/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:12:52]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:12:52] 2025-11-23 20:12:17,464 | INFO     | PID=86616 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 12:12:52] 2025-11-23 20:12:17,464 | INFO     | .. there are 14 such processes running
[2025-11-23 12:12:52] 2025-11-23 20:12:18,467 | INFO     | time since job start (48544s) is within the limit (172800.0s)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,548 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 12:12:52] 2025-11-23 20:12:19,551 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8659999999995
[2025-11-23 12:12:52] 2025-11-23 20:12:19,554 | INFO     | using path: /var/lib/multiboinc/boinc505/slots/2/PanDA_Pilot-6894270951/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,555 | INFO     | extracted standard info from prmon json
[2025-11-23 12:12:52] 2025-11-23 20:12:19,555 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:12:52] 2025-11-23 20:12:19,555 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:12:52] 2025-11-23 20:12:19,564 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:12:52] 2025-11-23 20:12:19,565 | INFO     | sum of square deviations: 156392867195.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,574 | INFO     | sum of deviations: 861208032304.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,574 | INFO     | mean x: 1763904467.5
[2025-11-23 12:12:52] 2025-11-23 20:12:19,575 | INFO     | mean y: 2895585.638190955
[2025-11-23 12:12:52] 2025-11-23 20:12:19,575 | INFO     | intersect: -9710390722.578278
[2025-11-23 12:12:52] 2025-11-23 20:12:19,575 | INFO     | chi2: 5.48322333606308
[2025-11-23 12:12:52] 2025-11-23 20:12:19,575 | INFO     | sum of square deviations: 153464235540.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,585 | INFO     | sum of deviations: 1119359100468.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,585 | INFO     | mean x: 1763904315.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,585 | INFO     | mean y: 2909019.941845765
[2025-11-23 12:12:52] 2025-11-23 20:12:19,585 | INFO     | intersect: -12862905222.721823
[2025-11-23 12:12:52] 2025-11-23 20:12:19,585 | INFO     | chi2: 2.4415070940333146
[2025-11-23 12:12:52] 2025-11-23 20:12:19,586 | INFO     | current chi2=2.4415070940333146 (change=55.47314153746834 %)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,586 | INFO     | sum of square deviations: 150572395272.5
[2025-11-23 12:12:52] 2025-11-23 20:12:19,597 | INFO     | sum of deviations: 1114789462429.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,597 | INFO     | mean x: 1763904162.5
[2025-11-23 12:12:52] 2025-11-23 20:12:19,597 | INFO     | mean y: 2908776.638676845
[2025-11-23 12:12:52] 2025-11-23 20:12:19,597 | INFO     | intersect: -13056468870.44577
[2025-11-23 12:12:52] 2025-11-23 20:12:19,598 | INFO     | chi2: 2.4220579719043287
[2025-11-23 12:12:52] 2025-11-23 20:12:19,598 | INFO     | current chi2=2.4220579719043287 (change=0.7966031381402358 %)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,598 | INFO     | right removable region: 785
[2025-11-23 12:12:52] 2025-11-23 20:12:19,598 | INFO     | sum of square deviations: 153464235540.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,606 | INFO     | sum of deviations: 639658363723.9999
[2025-11-23 12:12:52] 2025-11-23 20:12:19,606 | INFO     | mean x: 1763904620.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,606 | INFO     | mean y: 2907105.5132743362
[2025-11-23 12:12:52] 2025-11-23 20:12:19,606 | INFO     | intersect: -7349270677.305164
[2025-11-23 12:12:52] 2025-11-23 20:12:19,606 | INFO     | chi2: 3.2193989104188505
[2025-11-23 12:12:52] 2025-11-23 20:12:19,606 | INFO     | current chi2=3.2193989104188505 (change=41.28638005231502 %)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,607 | INFO     | sum of square deviations: 150572395272.5
[2025-11-23 12:12:52] 2025-11-23 20:12:19,614 | INFO     | sum of deviations: 594437389365.5
[2025-11-23 12:12:52] 2025-11-23 20:12:19,617 | INFO     | mean x: 1763904772.5
[2025-11-23 12:12:52] 2025-11-23 20:12:19,617 | INFO     | mean y: 2909489.0190839693
[2025-11-23 12:12:52] 2025-11-23 20:12:19,618 | INFO     | intersect: -6960723826.082639
[2025-11-23 12:12:52] 2025-11-23 20:12:19,618 | INFO     | chi2: 3.1760107247730165
[2025-11-23 12:12:52] 2025-11-23 20:12:19,618 | INFO     | current chi2=3.1760107247730165 (change=1.3477107638142651 %)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,618 | INFO     | left removable region: 20
[2025-11-23 12:12:52] 2025-11-23 20:12:19,618 | INFO     | sum of square deviations: 138823179630.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,625 | INFO     | sum of deviations: 796759424998.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,625 | INFO     | mean x: 1763904742.0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,625 | INFO     | mean y: 2925627.895424837
[2025-11-23 12:12:52] 2025-11-23 20:12:19,625 | INFO     | intersect: -10120799615.489319
[2025-11-23 12:12:52] 2025-11-23 20:12:19,626 | INFO     | chi2: 0.08225704450875182
[2025-11-23 12:12:52] 2025-11-23 20:12:19,626 | INFO     | current memory leak: 5.74 B/s (using 765 data points, chi2=0.08)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,626 | INFO     | could have reported an average CPU frequency of 3999 MHz (30 samples)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,626 | INFO     | ..............................
[2025-11-23 12:12:52] 2025-11-23 20:12:19,626 | INFO     | . Timing measurements:
[2025-11-23 12:12:52] 2025-11-23 20:12:19,626 | INFO     | . get job = 0 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,627 | INFO     | . initial setup = 3 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,627 | INFO     | . payload setup = 5 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,627 | INFO     | . stage-in = 0 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,627 | INFO     | . payload execution = 48510 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,627 | INFO     | . stage-out = 3 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,627 | INFO     | . log creation = 0 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,627 | INFO     | ..............................
[2025-11-23 12:12:52] 2025-11-23 20:12:19,683 | INFO     | 
[2025-11-23 12:12:52] 2025-11-23 20:12:19,683 | INFO     | job summary report
[2025-11-23 12:12:52] 2025-11-23 20:12:19,683 | INFO     | --------------------------------------------------
[2025-11-23 12:12:52] 2025-11-23 20:12:19,683 | INFO     | PanDA job id: 6894270951
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | task id: 47533967
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | errors: (none)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | pilot state: finished 
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | transexitcode: 0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | exeerrorcode: 0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | exeerrordiag: 
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | exitcode: 0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | exitmsg: OK
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | cpuconsumptiontime: 133913 s
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | nevents: 1000
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | neventsw: 0
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | pid: 101696
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | pgrp: 101696
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | corecount: 8
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | event service: False
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | sizes: {0: 2298820, 4: 2299082, 11: 2299110, 48519: 2346123, 48524: 2355145, 48525: 2355201, 48530: 2355575}
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | --------------------------------------------------
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | 
[2025-11-23 12:12:52] 2025-11-23 20:12:19,684 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc505/slots/2
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,705 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,706 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,706 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:12:52] 2025-11-23 20:12:19,706 | INFO     | job 6894270951 has completed (purged errors)
[2025-11-23 12:12:52] 2025-11-23 20:12:19,706 | INFO     | overall cleanup function is called
[2025-11-23 12:12:52] 2025-11-23 20:12:20,718 | INFO     | --- collectZombieJob: --- 10, [101696]
[2025-11-23 12:12:52] 2025-11-23 20:12:20,719 | INFO     | zombie collector waiting for pid 101696
[2025-11-23 12:12:52] 2025-11-23 20:12:20,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:12:52] 2025-11-23 20:12:20,719 | INFO     | collected zombie processes
[2025-11-23 12:12:52] 2025-11-23 20:12:20,719 | INFO     | will attempt to kill all subprocesses of pid=101696
[2025-11-23 12:12:52] 2025-11-23 20:12:21,042 | INFO     | process IDs to be killed: [101696] (in reverse order)
[2025-11-23 12:12:52] 2025-11-23 20:12:21,189 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:12:52] 2025-11-23 20:12:21,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:12:52] 2025-11-23 20:12:21,194 | INFO     | did not find any defunct processes belonging to 101696
[2025-11-23 12:12:52] 2025-11-23 20:12:21,200 | INFO     | did not find any defunct processes belonging to 101696
[2025-11-23 12:12:52] 2025-11-23 20:12:21,200 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:12:52] 2025-11-23 20:12:21,200 | INFO     | ready for new job
[2025-11-23 12:12:52] 2025-11-23 20:12:21,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:12:52] 2025-11-23 20:12:21,203 | INFO     | ***************************************
[2025-11-23 12:12:52] 2025-11-23 20:12:21,203 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:12:52] 2025-11-23 20:12:21,203 | INFO     | ***************************************
[2025-11-23 12:12:52] 2025-11-23 20:12:21,203 | INFO     | 
[2025-11-23 12:12:52] 2025-11-23 20:12:21,204 | INFO     | architecture information:
[2025-11-23 12:12:52] 2025-11-23 20:12:21,204 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:12:52] 2025-11-23 20:12:21,224 | INFO     | cat /etc/os-release:
[2025-11-23 12:12:52] NAME="CentOS Linux"
[2025-11-23 12:12:52] VERSION="7 (Core)"
[2025-11-23 12:12:52] ID="centos"
[2025-11-23 12:12:52] ID_LIKE="rhel fedora"
[2025-11-23 12:12:52] VERSION_ID="7"
[2025-11-23 12:12:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:12:52] ANSI_COLOR="0;31"
[2025-11-23 12:12:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:12:52] HOME_URL="https://www.centos.org/"
[2025-11-23 12:12:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:12:52] 
[2025-11-23 12:12:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:12:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:12:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:12:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:12:52] 
[2025-11-23 12:12:52] 2025-11-23 20:12:21,225 | INFO     | ***************************************
[2025-11-23 12:12:52] 2025-11-23 20:12:21,727 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc505/slots/2
[2025-11-23 12:12:52] 2025-11-23 20:12:21,763 | INFO     | sufficient remaining disk space (173471170560 B)
[2025-11-23 12:12:52] 2025-11-23 20:12:21,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:12:52] 2025-11-23 20:12:21,764 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:12:52] 2025-11-23 20:12:21,764 | INFO     | update_server=False
[2025-11-23 12:12:52] 2025-11-23 20:12:21,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:12:52] 2025-11-23 20:12:21,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:12:52] 2025-11-23 20:12:21,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:12:52] 2025-11-23 20:12:21,768 | INFO     | aborting loop
[2025-11-23 12:12:52] 2025-11-23 20:12:21,922 | INFO     | all job control threads have been joined
[2025-11-23 12:12:52] 2025-11-23 20:12:22,052 | INFO     | all payload control threads have been joined
[2025-11-23 12:12:52] 2025-11-23 20:12:22,153 | INFO     | all data control threads have been joined
[2025-11-23 12:12:52] 2025-11-23 20:12:22,768 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:22,772 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:22,927 | INFO     | [job] control thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,057 | INFO     | [payload] control thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,069 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,070 | INFO     | [job] validate thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,158 | INFO     | [data] control thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,248 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,256 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,739 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,772 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:23,788 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:24,243 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:24,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:12:52] 2025-11-23 20:12:25,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:12:52] 2025-11-23 20:12:25,698 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:29,157 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:12:52] 2025-11-23 20:12:34,987 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:12:52] 2025-11-23 20:12:35,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492141868864)>', '<ExcThread(monitor, started 140491626620672)>']
[2025-11-23 12:12:52] 2025-11-23 20:12:40,328 | INFO     | all workflow threads have been joined
[2025-11-23 12:12:52] 2025-11-23 20:12:40,329 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:12:52] 2025-11-23 20:12:40,329 | INFO     | traces error code: 0
[2025-11-23 12:12:52] 2025-11-23 20:12:40,329 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:12:52] 2025-11-23 20:12:52,000 | INFO     | PID=86616 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 12:12:52] 2025-11-23 20:12:52,000 | INFO     | .. there are 14 such processes running
[2025-11-23 12:12:52] 2025-11-23 20:12:52,000 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:12:52] 2025-11-23 20:12:52,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:12:52] 2025-11-23 20:12:52,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:12:52] 2025-11-23 20:12:52,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:12:52] 2025-11-23 20:12:52,000 | INFO     | [monitor] control thread has ended
[2025-11-23 12:12:52] 2025-11-23 20:12:52,123 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:12:52] 2025-11-23 20:12:52,125 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:12:52] 2025-11-23 20:12:52,126 [wrapper] pilotpid: 86616
[2025-11-23 12:12:52] 2025-11-23 20:12:52,128 [wrapper] Pilot exit status: 0
[2025-11-23 12:12:52] 2025-11-23 20:12:52,142 [wrapper] pandaids: 6894270951
[2025-11-23 12:12:52] 2025-11-23 20:12:52,188 [wrapper] cleanup supervisor_pilot 1118875 86617
[2025-11-23 12:12:52] 2025-11-23 20:12:52,193 [wrapper] Test setup, not cleaning
[2025-11-23 12:12:52] 2025-11-23 20:12:52,194 [wrapper] apfmon messages muted
[2025-11-23 12:12:52] 2025-11-23 20:12:52,196 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:12:52] 2025-11-23 20:12:52,197 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:12:52]  *** Error codes and diagnostics ***
[2025-11-23 12:12:52]     "exeErrorCode": 0,
[2025-11-23 12:12:52]     "exeErrorDiag": "",
[2025-11-23 12:12:52]     "pilotErrorCode": 0,
[2025-11-23 12:12:52]     "pilotErrorDiag": "",
[2025-11-23 12:12:52]  *** Listing of results directory ***
[2025-11-23 12:12:52] total 1332908
[2025-11-23 12:12:52] -rw-r--r-- 1 root root    576529 Nov 20 23:07 pilot3.tar.gz
[2025-11-23 12:12:52] -rw-r--r-- 1 root root      5112 Nov 20 23:11 queuedata.json
[2025-11-23 12:12:52] -rwx------ 1 4871 1028     36292 Nov 20 23:14 runpilot2-wrapper.sh
[2025-11-23 12:12:52] -rw-r--r-- 1 root root       100 Nov 22 22:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:12:52] -rwxr-xr-x 1 root root      7986 Nov 22 22:43 run_atlas
[2025-11-23 12:12:52] -rw-r--r-- 1 root root       105 Nov 22 22:43 job.xml
[2025-11-23 12:12:52] -rw-r--r-- 2 root root 410258225 Nov 22 22:43 EVNT.47493127._002293.pool.root.1
[2025-11-23 12:12:52] -rw-r--r-- 2 root root     15847 Nov 22 22:43 start_atlas.sh
[2025-11-23 12:12:52] drwxrwx--x 2 root root      4096 Nov 22 22:43 shared
[2025-11-23 12:12:52] -rw-r--r-- 2 root root    590103 Nov 22 22:43 input.tar.gz
[2025-11-23 12:12:52] -rw-r--r-- 1 root root         0 Nov 22 22:43 boinc_lockfile
[2025-11-23 12:12:52] -rw-r--r-- 1 root root      2785 Nov 22 22:43 pandaJob.out
[2025-11-23 12:12:52] -rw------- 1 root root    989784 Nov 22 22:43 agis_schedconf.cvmfs.json
[2025-11-23 12:12:52] drwxr-xr-x 5  320  320      4096 Nov 22 22:43 pilot3
[2025-11-23 12:12:52] -rw-r--r-- 1 root root      7082 Nov 23 10:59 init_data.xml
[2025-11-23 12:12:52] -rw-r--r-- 1 root root       532 Nov 23 12:06 boinc_task_state.xml
[2025-11-23 12:12:52] -rw------- 1 root root 932928177 Nov 23 12:11 HITS.47533967._002642.pool.root.1
[2025-11-23 12:12:52] -rw------- 1 root root      1066 Nov 23 12:12 memory_monitor_summary.json
[2025-11-23 12:12:52] -rw------- 1 root root   1526164 Nov 23 12:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:12:52] -rw------- 1 root root        95 Nov 23 12:12 pilot_heartbeat.json
[2025-11-23 12:12:52] -rw------- 1 root root   1982426 Nov 23 12:12 log.47533967._002642.job.log.tgz.1
[2025-11-23 12:12:52] -rw------- 1 root root      8610 Nov 23 12:12 heartbeat.json
[2025-11-23 12:12:52] -rw-r--r-- 1 root root        29 Nov 23 12:12 wrapper_checkpoint.txt
[2025-11-23 12:12:52] -rw-r--r-- 1 root root      8192 Nov 23 12:12 boinc_mmap_file
[2025-11-23 12:12:52] -rw------- 1 root root       821 Nov 23 12:12 pilotlog.txt
[2025-11-23 12:12:52] -rw------- 1 root root   6913127 Nov 23 12:12 log.47533967._002642.job.log.1
[2025-11-23 12:12:52] -rw------- 1 root root       353 Nov 23 12:12 output.list
[2025-11-23 12:12:52] -rw-r--r-- 1 root root       620 Nov 23 12:12 runtime_log
[2025-11-23 12:12:52] -rw------- 1 root root   8919040 Nov 23 12:12 result.tar.gz
[2025-11-23 12:12:52] -rw-r--r-- 1 root root      9019 Nov 23 12:12 runtime_log.err
[2025-11-23 12:12:52] -rw------- 1 root root       663 Nov 23 12:12 FVFNDmQWag8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVQHKDmMBrfQn.diag
[2025-11-23 12:12:52] -rw-r--r-- 1 root root     21437 Nov 23 12:12 stderr.txt
[2025-11-23 12:12:52] HITS file was successfully produced:
[2025-11-23 12:12:52] -rw------- 1 root root 932928177 Nov 23 12:11 shared/HITS.pool.root.1
[2025-11-23 12:12:52]  *** Contents of shared directory: ***
[2025-11-23 12:12:52] total 1321024
[2025-11-23 12:12:52] -rw-r--r-- 2 root root 410258225 Nov 22 22:43 ATLAS.root_0
[2025-11-23 12:12:52] -rw-r--r-- 2 root root     15847 Nov 22 22:43 start_atlas.sh
[2025-11-23 12:12:52] -rw-r--r-- 2 root root    590103 Nov 22 22:43 input.tar.gz
[2025-11-23 12:12:52] -rw------- 1 root root 932928177 Nov 23 12:11 HITS.pool.root.1
[2025-11-23 12:12:52] -rw------- 1 root root   8919040 Nov 23 12:12 result.tar.gz
12:12:53 (82412): run_atlas exited; CPU time 134077.708400
12:12:53 (82412): called boinc_finish(0)

</stderr_txt>
]]>

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