Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:10:21 (21383): wrapper (7.7.26015): starting
01:10:21 (21383): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:10:21] Arguments: --nthreads 8
[2025-11-25 01:10:21] Threads: 8
[2025-11-25 01:10:21] Checking for CVMFS
[2025-11-25 01:10:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:10:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:10:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:10:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:10:25] 2.11.2.0 19422 283172 142168 153263 3 85 23693450 25165824 1060 130560 12 137639643 99.872 84379399 2901 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:10:25] CVMFS is ok
[2025-11-25 01:10:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:10:25] Checking for apptainer binary...
[2025-11-25 01:10:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:10:25] Running /usr/bin/apptainer --version
[2025-11-25 01:10:25] apptainer version 1.3.2-1.el7
[2025-11-25 01:10:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:10:37] cg-vwn320.simple-grid.lan
[2025-11-25 01:10:37] apptainer works
[2025-11-25 01:10:37] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:10:37] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:10:37] Starting ATLAS job with PandaID=6894245879
[2025-11-25 01:10:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:27:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:27:09] 2025-11-25 23:26:05,798 | INFO     | PID=25106 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 00:27:09] 2025-11-25 23:26:05,798 | INFO     | .. there are 9 such processes running
[2025-11-26 00:27:09] 2025-11-25 23:26:06,799 | INFO     | time since job start (83431s) is within the limit (172800.0s)
[2025-11-26 00:27:09] 2025-11-25 23:26:08,175 | INFO     | monitor loop #5634: job 0:6894245879 is in state 'finished'
[2025-11-26 00:27:09] 2025-11-25 23:26:08,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:27:09] 2025-11-25 23:26:08,808 | INFO     | time since job start (83433s) is within the limit (172800.0s)
[2025-11-26 00:27:09] 2025-11-25 23:26:10,680 | INFO     | monitor loop #5635: job 0:6894245879 is in state 'finished'
[2025-11-26 00:27:09] 2025-11-25 23:26:10,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:27:09] 2025-11-25 23:26:10,815 | INFO     | time since job start (83435s) is within the limit (172800.0s)
[2025-11-26 00:27:09] 2025-11-25 23:26:12,821 | INFO     | time since job start (83437s) is within the limit (172800.0s)
[2025-11-26 00:27:09] 2025-11-25 23:26:13,187 | INFO     | monitor loop #5636: job 0:6894245879 is in state 'finished'
[2025-11-26 00:27:09] 2025-11-25 23:26:13,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:27:09] 2025-11-25 23:26:14,827 | INFO     | time since job start (83439s) is within the limit (172800.0s)
[2025-11-26 00:27:09] 2025-11-25 23:26:15,690 | INFO     | monitor loop #5637: job 0:6894245879 is in state 'finished'
[2025-11-26 00:27:09] 2025-11-25 23:26:15,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:27:09] 2025-11-25 23:26:16,838 | INFO     | time since job start (83441s) is within the limit (172800.0s)
[2025-11-26 00:27:09] 2025-11-25 23:26:17,253 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 00:27:09] 2025-11-25 23:26:17,254 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 00:27:09] 2025-11-25 23:26:17,257 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6894245879/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 00:27:09] 2025-11-25 23:26:17,257 | INFO     | extracted standard info from prmon json
[2025-11-26 00:27:09] 2025-11-25 23:26:17,257 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 00:27:09] 2025-11-25 23:26:17,258 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 00:27:09] 2025-11-25 23:26:17,289 | INFO     | fitting pss+swap vs Time
[2025-11-26 00:27:09] 2025-11-25 23:26:17,292 | INFO     | sum of square deviations: 774855533766.2655
[2025-11-26 00:27:09] 2025-11-25 23:26:17,389 | INFO     | sum of deviations: 3587914228366.073
[2025-11-26 00:27:09] 2025-11-25 23:26:17,389 | INFO     | mean x: 1764071651.1429625
[2025-11-26 00:27:09] 2025-11-25 23:26:17,389 | INFO     | mean y: 2825299.5151068536
[2025-11-26 00:27:09] 2025-11-25 23:26:17,389 | INFO     | intersect: -8165584812.017123
[2025-11-26 00:27:09] 2025-11-25 23:26:17,391 | INFO     | chi2: 31.315666490589507
[2025-11-26 00:27:09] 2025-11-25 23:26:17,394 | INFO     | sum of square deviations: 766322488674.7094
[2025-11-26 00:27:09] 2025-11-25 23:26:17,452 | INFO     | sum of deviations: 4036335720410.5654
[2025-11-26 00:27:09] 2025-11-25 23:26:17,452 | INFO     | mean x: 1764071498.6471894
[2025-11-26 00:27:09] 2025-11-25 23:26:17,453 | INFO     | mean y: 2833312.451923077
[2025-11-26 00:27:09] 2025-11-25 23:26:17,453 | INFO     | intersect: -9288796397.726566
[2025-11-26 00:27:09] 2025-11-25 23:26:17,454 | INFO     | chi2: 28.098710829542647
[2025-11-26 00:27:09] 2025-11-25 23:26:17,455 | INFO     | current chi2=28.098710829542647 (change=10.272671865417808 %)
[2025-11-26 00:27:09] 2025-11-25 23:26:17,455 | INFO     | right removable region: 1351
[2025-11-26 00:27:09] 2025-11-25 23:26:17,457 | INFO     | sum of square deviations: 766321542564.7095
[2025-11-26 00:27:09] 2025-11-25 23:26:17,515 | INFO     | sum of deviations: 3005789071349.6265
[2025-11-26 00:27:09] 2025-11-25 23:26:17,515 | INFO     | mean x: 1764071803.6471894
[2025-11-26 00:27:09] 2025-11-25 23:26:17,515 | INFO     | mean y: 2835702.175295858
[2025-11-26 00:27:09] 2025-11-25 23:26:17,515 | INFO     | intersect: -6916489220.797231
[2025-11-26 00:27:09] 2025-11-25 23:26:17,517 | INFO     | chi2: 26.17365724102393
[2025-11-26 00:27:09] 2025-11-25 23:26:17,518 | INFO     | current chi2=26.17365724102393 (change=16.419925953390692 %)
[2025-11-26 00:27:09] 2025-11-25 23:26:17,518 | INFO     | left removable region: 10
[2025-11-26 00:27:09] 2025-11-25 23:26:17,520 | INFO     | sum of square deviations: 747768924653.1127
[2025-11-26 00:27:09] 2025-11-25 23:26:17,577 | INFO     | sum of deviations: 3021170141277.1636
[2025-11-26 00:27:09] 2025-11-25 23:26:17,577 | INFO     | mean x: 1764071773.1565995
[2025-11-26 00:27:09] 2025-11-25 23:26:17,577 | INFO     | mean y: 2855215.4563758387
[2025-11-26 00:27:09] 2025-11-25 23:26:17,577 | INFO     | intersect: -7124428083.462397
[2025-11-26 00:27:09] 2025-11-25 23:26:17,579 | INFO     | chi2: 17.966910579782905
[2025-11-26 00:27:09] 2025-11-25 23:26:17,579 | INFO     | current memory leak: 4.04 B/s (using 1341 data points, chi2=17.97)
[2025-11-26 00:27:09] 2025-11-25 23:26:17,581 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | ..............................
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | . Timing measurements:
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | . get job = 0 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | . initial setup = 14 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | . payload setup = 177 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | . stage-in = 0 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | . payload execution = 82929 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,582 | INFO     | . stage-out = 4 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,583 | INFO     | . log creation = 2 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,583 | INFO     | ..............................
[2025-11-26 00:27:09] 2025-11-25 23:26:17,709 | INFO     | 
[2025-11-26 00:27:09] 2025-11-25 23:26:17,709 | INFO     | job summary report
[2025-11-26 00:27:09] 2025-11-25 23:26:17,709 | INFO     | --------------------------------------------------
[2025-11-26 00:27:09] 2025-11-25 23:26:17,709 | INFO     | PanDA job id: 6894245879
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | task id: 47533967
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | errors: (none)
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | pilot state: finished 
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | transexitcode: 0
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | exeerrorcode: 0
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | exeerrordiag: 
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | exitcode: 0
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | exitmsg: OK
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | cpuconsumptiontime: 333896 s
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | nevents: 1000
[2025-11-26 00:27:09] 2025-11-25 23:26:17,710 | INFO     | neventsw: 0
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | pid: 31588
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | pgrp: 31588
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | corecount: 8
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | event service: False
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | sizes: {0: 2283480, 1: 2284165, 2: 2284364, 13: 2284364, 24: 2284420, 34: 2284448, 45: 2284604, 56: 2284632, 67: 2284660, 77: 2284688, 88: 2284744, 99: 2285052, 11
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | --------------------------------------------------
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | 
[2025-11-26 00:27:09] 2025-11-25 23:26:17,711 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 00:27:09] 2025-11-25 23:26:18,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,119 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,119 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 00:27:09] 2025-11-25 23:26:18,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 00:27:09] 2025-11-25 23:26:18,121 | INFO     | job 6894245879 has completed (purged errors)
[2025-11-26 00:27:09] 2025-11-25 23:26:18,121 | INFO     | overall cleanup function is called
[2025-11-26 00:27:09] 2025-11-25 23:26:19,139 | INFO     | --- collectZombieJob: --- 10, [31588]
[2025-11-26 00:27:09] 2025-11-25 23:26:19,139 | INFO     | zombie collector waiting for pid 31588
[2025-11-26 00:27:09] 2025-11-25 23:26:19,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 00:27:09] 2025-11-25 23:26:19,140 | INFO     | collected zombie processes
[2025-11-26 00:27:09] 2025-11-25 23:26:19,140 | INFO     | will attempt to kill all subprocesses of pid=31588
[2025-11-26 00:27:09] 2025-11-25 23:26:19,269 | INFO     | process IDs to be killed: [31588] (in reverse order)
[2025-11-26 00:27:09] 2025-11-25 23:26:19,907 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 00:27:09] 2025-11-25 23:26:19,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 00:27:09] 2025-11-25 23:26:19,911 | INFO     | did not find any defunct processes belonging to 31588
[2025-11-26 00:27:09] 2025-11-25 23:26:19,914 | INFO     | did not find any defunct processes belonging to 31588
[2025-11-26 00:27:09] 2025-11-25 23:26:19,954 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 00:27:09] 2025-11-25 23:26:19,955 | INFO     | ready for new job
[2025-11-26 00:27:09] 2025-11-25 23:26:19,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 00:27:09] 2025-11-25 23:26:19,961 | INFO     | ***************************************
[2025-11-26 00:27:09] 2025-11-25 23:26:19,961 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 00:27:09] 2025-11-25 23:26:19,961 | INFO     | ***************************************
[2025-11-26 00:27:09] 2025-11-25 23:26:19,961 | INFO     | 
[2025-11-26 00:27:09] 2025-11-25 23:26:19,966 | INFO     | pilot is running in a VM
[2025-11-26 00:27:09] 2025-11-25 23:26:19,967 | INFO     | architecture information:
[2025-11-26 00:27:09] 2025-11-25 23:26:19,976 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:27:09] 2025-11-25 23:26:20,145 | INFO     | cat /etc/os-release:
[2025-11-26 00:27:09] NAME="CentOS Linux"
[2025-11-26 00:27:09] VERSION="7 (Core)"
[2025-11-26 00:27:09] ID="centos"
[2025-11-26 00:27:09] ID_LIKE="rhel fedora"
[2025-11-26 00:27:09] VERSION_ID="7"
[2025-11-26 00:27:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:27:09] ANSI_COLOR="0;31"
[2025-11-26 00:27:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:27:09] HOME_URL="https://www.centos.org/"
[2025-11-26 00:27:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:27:09] 
[2025-11-26 00:27:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:27:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:27:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:27:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:27:09] 
[2025-11-26 00:27:09] 2025-11-25 23:26:20,146 | INFO     | ***************************************
[2025-11-26 00:27:09] 2025-11-25 23:26:20,649 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 00:27:09] 2025-11-25 23:26:20,841 | INFO     | sufficient remaining disk space (495034826752 B)
[2025-11-26 00:27:09] 2025-11-25 23:26:20,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:27:09] 2025-11-25 23:26:20,841 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:27:09] 2025-11-25 23:26:20,841 | INFO     | update_server=False
[2025-11-26 00:27:09] 2025-11-25 23:26:20,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:27:09] 2025-11-25 23:26:20,847 | INFO     | all data control threads have been joined
[2025-11-26 00:27:09] 2025-11-25 23:26:21,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:27:09] 2025-11-25 23:26:21,665 | INFO     | all payload control threads have been joined
[2025-11-26 00:27:09] 2025-11-25 23:26:21,718 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:27:09] 2025-11-25 23:26:21,718 | INFO     | aborting loop
[2025-11-26 00:27:09] 2025-11-25 23:26:21,847 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:21,853 | INFO     | [data] control thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:21,928 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:21,931 | INFO     | all job control threads have been joined
[2025-11-26 00:27:09] 2025-11-25 23:26:22,182 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:22,259 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:22,319 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:22,332 | INFO     | [job] validate thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:22,671 | INFO     | [payload] control thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:22,724 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:22,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:27:09] 2025-11-25 23:26:22,937 | INFO     | [job] control thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:23,060 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:23,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:27:09] 2025-11-25 23:26:23,240 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:23,252 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:23,628 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:23,734 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:27,169 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:27:09] 2025-11-25 23:26:50,000 | INFO     | PID=25106 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 00:27:09] 2025-11-25 23:26:50,000 | INFO     | .. there are 9 such processes running
[2025-11-26 00:27:09] 2025-11-25 23:26:50,001 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:27:09] 2025-11-25 23:26:50,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:27:09] 2025-11-25 23:26:50,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:27:09] 2025-11-25 23:27:00,062 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:27:09] 2025-11-25 23:27:00,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065748981568)>', '<ExcThread(monitor, started 140065166575360)>']
[2025-11-26 00:27:09] 2025-11-25 23:27:01,064 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:27:09] 2025-11-25 23:27:01,064 | INFO     | [monitor] control thread has ended
[2025-11-26 00:27:09] 2025-11-25 23:27:05,676 | INFO     | all workflow threads have been joined
[2025-11-26 00:27:09] 2025-11-25 23:27:05,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:27:09] 2025-11-25 23:27:05,676 | INFO     | traces error code: 0
[2025-11-26 00:27:09] 2025-11-25 23:27:05,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:27:09] 2025-11-25 23:27:05,981 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:27:09] 2025-11-25 23:27:06,072 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:27:09] 2025-11-25 23:27:06,175 [wrapper] pilotpid: 25106
[2025-11-26 00:27:09] 2025-11-25 23:27:06,289 [wrapper] Pilot exit status: 0
[2025-11-26 00:27:09] 2025-11-25 23:27:06,678 [wrapper] pandaids: 6894245879
[2025-11-26 00:27:09] 2025-11-25 23:27:07,143 [wrapper] cleanup supervisor_pilot 18145 25107
[2025-11-26 00:27:09] 2025-11-25 23:27:07,174 [wrapper] Test setup, not cleaning
[2025-11-26 00:27:09] 2025-11-25 23:27:07,246 [wrapper] apfmon messages muted
[2025-11-26 00:27:09] 2025-11-25 23:27:07,315 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:27:09] 2025-11-25 23:27:07,388 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:27:09]  *** Error codes and diagnostics ***
[2025-11-26 00:27:09]     "exeErrorCode": 0,
[2025-11-26 00:27:09]     "exeErrorDiag": "",
[2025-11-26 00:27:09]     "pilotErrorCode": 0,
[2025-11-26 00:27:09]     "pilotErrorDiag": "",
[2025-11-26 00:27:09]  *** Listing of results directory ***
[2025-11-26 00:27:09] total 1336736
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc      5112 Nov 21 02:19 queuedata.json
[2025-11-26 00:27:09] -rwx------. 1 boinc boinc     36292 Nov 21 02:20 runpilot2-wrapper.sh
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:27:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:10 run_atlas
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:10 job.xml
[2025-11-26 00:27:09] -rw-r--r--. 2 boinc boinc 411394296 Nov 25 01:10 EVNT.47493127._002085.pool.root.1
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc      6391 Nov 25 01:10 init_data.xml
[2025-11-26 00:27:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:10 start_atlas.sh
[2025-11-26 00:27:09] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:10 shared
[2025-11-26 00:27:09] -rw-r--r--. 2 boinc boinc    611282 Nov 25 01:10 input.tar.gz
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:10 boinc_lockfile
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc      2785 Nov 25 01:10 pandaJob.out
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc    991801 Nov 25 01:15 agis_schedconf.cvmfs.json
[2025-11-26 00:27:09] drwx------. 7 boinc boinc      4096 Nov 25 01:15 pilot3
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc       533 Nov 25 23:58 boinc_task_state.xml
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc 926192668 Nov 26 00:23 HITS.47533967._000570.pool.root.1
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc      1035 Nov 26 00:24 memory_monitor_summary.json
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc   1516240 Nov 26 00:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc   2469256 Nov 26 00:24 log.47533967._000570.job.log.tgz.1
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc      8628 Nov 26 00:26 heartbeat.json
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc      8192 Nov 26 00:26 boinc_mmap_file
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc        29 Nov 26 00:26 wrapper_checkpoint.txt
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc        95 Nov 26 00:26 pilot_heartbeat.json
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc      4884 Nov 26 00:27 pilotlog.txt
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc  11168181 Nov 26 00:27 log.47533967._000570.job.log.1
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc       353 Nov 26 00:27 output.list
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc       620 Nov 26 00:27 runtime_log
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc  13660160 Nov 26 00:27 result.tar.gz
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc      8817 Nov 26 00:27 runtime_log.err
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc       662 Nov 26 00:27 44iNDm2zUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4nIKDmsigagm.diag
[2025-11-26 00:27:09] -rw-r--r--. 1 boinc boinc     21508 Nov 26 00:27 stderr.txt
[2025-11-26 00:27:09] HITS file was successfully produced:
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc 926192668 Nov 26 00:23 shared/HITS.pool.root.1
[2025-11-26 00:27:09]  *** Contents of shared directory: ***
[2025-11-26 00:27:09] total 1320200
[2025-11-26 00:27:09] -rw-r--r--. 2 boinc boinc 411394296 Nov 25 01:10 ATLAS.root_0
[2025-11-26 00:27:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:10 start_atlas.sh
[2025-11-26 00:27:09] -rw-r--r--. 2 boinc boinc    611282 Nov 25 01:10 input.tar.gz
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc 926192668 Nov 26 00:23 HITS.pool.root.1
[2025-11-26 00:27:09] -rw-------. 1 boinc boinc  13660160 Nov 26 00:27 result.tar.gz
00:27:11 (21383): run_atlas exited; CPU time 334242.925156
00:27:11 (21383): called boinc_finish(0)

</stderr_txt>
]]>

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