Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:48:54 (38628): wrapper (7.7.26015): starting
04:48:54 (38628): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 04:48:54] Arguments: --nthreads 12
[2025-11-22 04:48:54] Threads: 12
[2025-11-22 04:48:54] Checking for CVMFS
[2025-11-22 04:48:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 04:48:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 04:48:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 04:49:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 04:49:01] 2.13.3.0 5957 681 99612 153159 0 79 4614623 102400000 713 130560 29 3107733 99.994 30844 7 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 04:49:01] CVMFS is ok
[2025-11-22 04:49:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 04:49:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 04:49:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 04:49:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 04:49:01] Further information can be found at the LHC@home message board.
[2025-11-22 04:49:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 04:49:01] Checking for apptainer binary...
[2025-11-22 04:49:01] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 04:49:01] apptainer is not installed, using version from CVMFS
[2025-11-22 04:49:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 04:49:02] crocidura-russula
[2025-11-22 04:49:02] apptainer works
[2025-11-22 04:49:02] Set ATHENA_PROC_NUMBER=12
[2025-11-22 04:49:02] Set ATHENA_CORE_NUMBER=12
[2025-11-22 04:49:02] Starting ATLAS job with PandaID=6893879636
[2025-11-22 04:49:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:19:31]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | could have reported an average CPU frequency of 3548 MHz (4 samples)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | ..............................
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . Timing measurements:
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . get job = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . initial setup = 15 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . payload setup = 9 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . stage-in = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . payload execution = 1655 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . stage-out = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . log creation = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | ..............................
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/1/PanDA_Pilot-6893879636/pilotlog.txt
[2025-11-22 05:19:31] 2025-11-22 05:19:19,145 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 05:19:31] - Log from pilotlog.txt -
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | sum of square deviations: 2865170.0
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | sum of deviations: -101208637.99999999
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | mean x: 1763787903.0
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | mean y: 716159.3333333334
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | intersect: 62304374016.80989
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | chi2: 0.022942965610533977
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | current memory leak: -35.32 B/s (using 21 data points, chi2=0.02)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | could have reported an average CPU frequency of 3548 MHz (4 samples)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | ..............................
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . Timing measurements:
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . get job = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . initial setup = 15 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . payload setup = 9 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . stage-in = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . payload execution = 1655 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . stage-out = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . log creation = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | ..............................
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/1/PanDA_Pilot-6893879636/pilotlog.txt
[2025-11-22 05:19:31] 2025-11-22 05:19:19,146 | WARNING  | 
[2025-11-22 05:19:31] [begin log extracts]
[2025-11-22 05:19:31] - Log from pilotlog.txt -
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | sum of square deviations: 2865170.0
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | sum of deviations: -101208637.99999999
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | mean x: 1763787903.0
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | mean y: 716159.3333333334
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | intersect: 62304374016.80989
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | chi2: 0.022942965610533977
[2025-11-22 05:19:31] 2025-11-22 05:19:19,138 | INFO     | current memory leak: -35.32 B/s (using 21 data points, chi2=0.02)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | could have reported an average CPU frequency of 3548 MHz (4 samples)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | ..............................
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . Timing measurements:
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . get job = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . initial setup = 15 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . payload setup = 9 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . stage-in = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . payload execution = 1655 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . stage-out = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | . log creation = 0 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | ..............................
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 05:19:31] 2025-11-22 05:19:19,139 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/1/PanDA_Pilot-6893879636/pilotlog.txt
[2025-11-22 05:19:31] [end log extracts]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,146 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,146 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 05:19:31] 2025-11-22 05:19:19,163 | INFO     | time since job start (1799s) is within the limit (172800.0s)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,364 | INFO     | 
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | job summary report
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | --------------------------------------------------
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | PanDA job id: 6893879636
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | task id: 47523449
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 05:17:14,481 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | pilot state: failed 
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | transexitcode: 65
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | exeerrorcode: 65
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | exitcode: 65
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algo
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | cpuconsumptiontime: 33 s
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | nevents: 0
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | neventsw: 0
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | pid: 8614
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | pgrp: 8614
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | corecount: 12
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | event service: False
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | sizes: {0: 2298755, 2: 2299017, 11: 2299045, 1667: 2327635, 1668: 2327635, 1785: 2327829}
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | --------------------------------------------------
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | 
[2025-11-22 05:19:31] 2025-11-22 05:19:19,365 | INFO     | executing command: ls -lF /virtma/boinc/slots/1
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | job 6893879636 has completed (purged errors)
[2025-11-22 05:19:31] 2025-11-22 05:19:19,377 | INFO     | overall cleanup function is called
[2025-11-22 05:19:31] 2025-11-22 05:19:20,384 | INFO     | --- collectZombieJob: --- 10, [8614]
[2025-11-22 05:19:31] 2025-11-22 05:19:20,384 | INFO     | zombie collector waiting for pid 8614
[2025-11-22 05:19:31] 2025-11-22 05:19:20,384 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:19:31] 2025-11-22 05:19:20,384 | INFO     | collected zombie processes
[2025-11-22 05:19:31] 2025-11-22 05:19:20,384 | INFO     | will attempt to kill all subprocesses of pid=8614
[2025-11-22 05:19:31] 2025-11-22 05:19:20,461 | INFO     | process IDs to be killed: [8614] (in reverse order)
[2025-11-22 05:19:31] 2025-11-22 05:19:20,491 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:19:31] 2025-11-22 05:19:20,491 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:19:31] 2025-11-22 05:19:20,494 | INFO     | did not find any defunct processes belonging to 8614
[2025-11-22 05:19:31] 2025-11-22 05:19:20,496 | INFO     | did not find any defunct processes belonging to 8614
[2025-11-22 05:19:31] 2025-11-22 05:19:20,497 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:19:31] 2025-11-22 05:19:20,497 | INFO     | ready for new job
[2025-11-22 05:19:31] 2025-11-22 05:19:20,497 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:19:31] 2025-11-22 05:19:20,498 | INFO     | ***************************************
[2025-11-22 05:19:31] 2025-11-22 05:19:20,498 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:19:31] 2025-11-22 05:19:20,498 | INFO     | ***************************************
[2025-11-22 05:19:31] 2025-11-22 05:19:20,498 | INFO     | 
[2025-11-22 05:19:31] 2025-11-22 05:19:20,499 | INFO     | architecture information:
[2025-11-22 05:19:31] 2025-11-22 05:19:20,499 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:19:31] 2025-11-22 05:19:20,506 | INFO     | cat /etc/os-release:
[2025-11-22 05:19:31] NAME="CentOS Linux"
[2025-11-22 05:19:31] VERSION="7 (Core)"
[2025-11-22 05:19:31] ID="centos"
[2025-11-22 05:19:31] ID_LIKE="rhel fedora"
[2025-11-22 05:19:31] VERSION_ID="7"
[2025-11-22 05:19:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:19:31] ANSI_COLOR="0;31"
[2025-11-22 05:19:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:19:31] HOME_URL="https://www.centos.org/"
[2025-11-22 05:19:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:19:31] 
[2025-11-22 05:19:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:19:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:19:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:19:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:19:31] 
[2025-11-22 05:19:31] 2025-11-22 05:19:20,506 | INFO     | ***************************************
[2025-11-22 05:19:31] 2025-11-22 05:19:21,009 | INFO     | executing command: df -mP /virtma/boinc/slots/1
[2025-11-22 05:19:31] 2025-11-22 05:19:21,016 | INFO     | sufficient remaining disk space (954412826624 B)
[2025-11-22 05:19:31] 2025-11-22 05:19:21,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | INFO     | update_server=False
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:19:31] 2025-11-22 05:19:21,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:19:31] 2025-11-22 05:19:21,085 | INFO     | all data control threads have been joined
[2025-11-22 05:19:31] 2025-11-22 05:19:21,149 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 05:19:31] 2025-11-22 05:19:21,149 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 05:19:31] 2025-11-22 05:19:21,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:19:31] 2025-11-22 05:19:21,149 | INFO     | will abort loop
[2025-11-22 05:19:31] 2025-11-22 05:19:21,840 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:19:31] 2025-11-22 05:19:22,009 | INFO     | all payload control threads have been joined
[2025-11-22 05:19:31] 2025-11-22 05:19:22,022 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,022 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,069 | INFO     | all job control threads have been joined
[2025-11-22 05:19:31] 2025-11-22 05:19:22,090 | INFO     | [data] control thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,154 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,154 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,207 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,409 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,752 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:22,886 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:23,014 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:19:31] 2025-11-22 05:19:23,014 | INFO     | [payload] control thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:23,074 | INFO     | [job] control thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:23,408 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:23,424 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:23,466 | INFO     | [job] validate thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:23,846 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:25,022 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:19:31] 2025-11-22 05:19:25,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136015816512)>', '<ExcThread(monitor, started 140135622489856)>']
[2025-11-22 05:19:31] 2025-11-22 05:19:26,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:19:31] 2025-11-22 05:19:26,038 | INFO     | [monitor] control thread has ended
[2025-11-22 05:19:31] 2025-11-22 05:19:30,955 | INFO     | all workflow threads have been joined
[2025-11-22 05:19:31] 2025-11-22 05:19:30,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:19:31] 2025-11-22 05:19:30,955 | INFO     | traces error code: 0
[2025-11-22 05:19:31] 2025-11-22 05:19:30,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:19:31] 2025-11-22 05:19:30,995 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:19:31] 2025-11-22 05:19:30,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:19:31] 2025-11-22 05:19:30,998 [wrapper] pilotpid: 43574
[2025-11-22 05:19:31] 2025-11-22 05:19:31,000 [wrapper] Pilot exit status: 0
[2025-11-22 05:19:31] 2025-11-22 05:19:31,004 [wrapper] pandaids: 6893879636
[2025-11-22 05:19:31] 2025-11-22 05:19:31,024 [wrapper] cleanup supervisor_pilot 32296 43575
[2025-11-22 05:19:31] 2025-11-22 05:19:31,025 [wrapper] Test setup, not cleaning
[2025-11-22 05:19:31] 2025-11-22 05:19:31,027 [wrapper] apfmon messages muted
[2025-11-22 05:19:31] 2025-11-22 05:19:31,028 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:19:31] 2025-11-22 05:19:31,029 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:19:31]  *** Error codes and diagnostics ***
[2025-11-22 05:19:31]     "exeErrorCode": 65,
[2025-11-22 05:19:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2025-11-22 05:19:31]     "pilotErrorCode": 1305,
[2025-11-22 05:19:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2025-11-22 05:19:31]  *** Listing of results directory ***
[2025-11-22 05:19:31] total 405256
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc    576529 Nov 20 19:10 pilot3.tar.gz
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc      5112 Nov 20 19:15 queuedata.json
[2025-11-22 05:19:31] -rwx------ 1 boinc boinc     36292 Nov 20 19:16 runpilot2-wrapper.sh
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc       100 Nov 22 04:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:19:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 04:48 run_atlas
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc       105 Nov 22 04:48 job.xml
[2025-11-22 05:19:31] -rw-r--r-- 2 boinc boinc     15847 Nov 22 04:48 start_atlas.sh
[2025-11-22 05:19:31] drwxrwx--x 2 boinc boinc        68 Nov 22 04:48 shared
[2025-11-22 05:19:31] -rw-r--r-- 2 boinc boinc    590105 Nov 22 04:48 input.tar.gz
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc      8919 Nov 22 04:48 init_data.xml
[2025-11-22 05:19:31] -rw-r--r-- 2 boinc boinc 410296557 Nov 22 04:48 EVNT.47493127._000823.pool.root.1
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc         0 Nov 22 04:48 boinc_setup_complete
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc         0 Nov 22 04:48 boinc_lockfile
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc      2785 Nov 22 04:49 pandaJob.out
[2025-11-22 05:19:31] -rw------- 1 boinc boinc    989752 Nov 22 04:49 agis_schedconf.cvmfs.json
[2025-11-22 05:19:31] -rw------- 1 boinc boinc   1526164 Nov 22 04:49 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:19:31] drwx------ 5 boinc boinc      4096 Nov 22 04:49 pilot3
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc       525 Nov 22 05:17 boinc_task_state.xml
[2025-11-22 05:19:31] -rw------- 1 boinc boinc      1012 Nov 22 05:17 memory_monitor_summary.json
[2025-11-22 05:19:31] -rw------- 1 boinc boinc     78849 Nov 22 05:17 log.47523449._008228.job.log.tgz.1
[2025-11-22 05:19:31] -rw------- 1 boinc boinc        95 Nov 22 05:18 pilot_heartbeat.json
[2025-11-22 05:19:31] -rw------- 1 boinc boinc      9153 Nov 22 05:19 heartbeat.json
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc        24 Nov 22 05:19 wrapper_checkpoint.txt
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc      8192 Nov 22 05:19 boinc_mmap_file
[2025-11-22 05:19:31] -rw------- 1 boinc boinc      4738 Nov 22 05:19 pilotlog.txt
[2025-11-22 05:19:31] -rw------- 1 boinc boinc    305724 Nov 22 05:19 log.47523449._008228.job.log.1
[2025-11-22 05:19:31] -rw------- 1 boinc boinc       186 Nov 22 05:19 output.list
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc       620 Nov 22 05:19 runtime_log
[2025-11-22 05:19:31] -rw------- 1 boinc boinc    409600 Nov 22 05:19 result.tar.gz
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc      8661 Nov 22 05:19 runtime_log.err
[2025-11-22 05:19:31] -rw------- 1 boinc boinc       644 Nov 22 05:19 MFGMDmxJPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlQIKDmw49WYm.diag
[2025-11-22 05:19:31] -rw-r--r-- 1 boinc boinc     22309 Nov 22 05:19 stderr.txt
[2025-11-22 05:19:31] No HITS result produced
[2025-11-22 05:19:31]  *** Contents of shared directory: ***
[2025-11-22 05:19:31] total 401680
[2025-11-22 05:19:31] -rw-r--r-- 2 boinc boinc     15847 Nov 22 04:48 start_atlas.sh
[2025-11-22 05:19:31] -rw-r--r-- 2 boinc boinc    590105 Nov 22 04:48 input.tar.gz
[2025-11-22 05:19:31] -rw-r--r-- 2 boinc boinc 410296557 Nov 22 04:48 ATLAS.root_0
[2025-11-22 05:19:31] -rw------- 1 boinc boinc    409600 Nov 22 05:19 result.tar.gz
05:19:32 (38628): run_atlas exited; CPU time 48.195542
05:19:32 (38628): called boinc_finish(0)

</stderr_txt>
]]>

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