Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:26:38 (69594): wrapper (7.7.26015): starting
01:26:38 (69594): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 01:26:38] Arguments: --nthreads 3
[2025-11-22 01:26:38] Threads: 3
[2025-11-22 01:26:38] Checking for CVMFS
[2025-11-22 01:26:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:26:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:26:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:26:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:26:39] 2.9.2.0 3971706 63 60272 153153 1 88 34591233 36864001 0 130560 0 876518 99.998 6628 5055 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 01:26:39] CVMFS is ok
[2025-11-22 01:26:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 01:26:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 01:26:39] Further information can be found at the LHC@home message board.
[2025-11-22 01:26:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:26:39] Checking for apptainer binary...
[2025-11-22 01:26:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:26:39] Running /usr/bin/apptainer --version
[2025-11-22 01:26:39] apptainer version 1.4.1-1.1
[2025-11-22 01:26:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:26:39] thA335
[2025-11-22 01:26:39] apptainer works
[2025-11-22 01:26:39] Set ATHENA_PROC_NUMBER=3
[2025-11-22 01:26:39] Set ATHENA_CORE_NUMBER=3
[2025-11-22 01:26:39] Starting ATLAS job with PandaID=6894245739
[2025-11-22 01:26:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 01:30:56]  *** The last 200 lines of the pilot log: ***
[2025-11-22 01:30:56] 2025-11-22 00:30:08,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 01:30:56] 2025-11-22 00:30:08,312 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 01:30:56] 2025-11-22 00:30:08,312 | INFO     | update_server=False
[2025-11-22 01:30:56] 2025-11-22 00:30:08,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 01:30:56] 2025-11-22 00:30:08,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:30:56] 2025-11-22 00:30:08,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:30:56] 2025-11-22 00:30:08,312 | INFO     | aborting loop
[2025-11-22 01:30:56] 2025-11-22 00:30:09,256 | INFO     | all job control threads have been joined
[2025-11-22 01:30:56] 2025-11-22 00:30:09,318 | INFO     | [job] retrieve thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:09,318 | INFO     | [job] queue monitor thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:09,319 | INFO     | [job] job monitor thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:09,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 01:30:56] 2025-11-22 00:30:09,328 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:09,371 | INFO     | all data control threads have been joined
[2025-11-22 01:30:56] 2025-11-22 00:30:09,404 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:09,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:09,731 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:09,762 | INFO     | all payload control threads have been joined
[2025-11-22 01:30:56] 2025-11-22 00:30:09,956 | INFO     | [data] copytool_in thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:10,262 | INFO     | [job] control thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:10,309 | INFO     | [payload] failed_post thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:10,377 | INFO     | [data] control thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:10,672 | INFO     | [payload] validate_post thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:10,740 | INFO     | [job] validate thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:10,768 | INFO     | [payload] control thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:11,330 | INFO     | [data] copytool_out thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:11,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 01:30:56] 2025-11-22 00:30:15,426 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 01:30:56] 2025-11-22 00:30:38,388 | INFO     | PID=73322 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 01:30:56] 2025-11-22 00:30:38,388 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 01:30:56] 2025-11-22 00:30:38,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 01:30:56] 2025-11-22 00:30:38,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 01:30:56] 2025-11-22 00:30:49,424 | INFO     | [monitor] cgroup control has ended
[2025-11-22 01:30:56] 2025-11-22 00:30:51,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140662130927424)>', '<ExcThread(monitor, started 140661630158592)>']
[2025-11-22 01:30:56] 2025-11-22 00:30:51,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 01:30:56] 2025-11-22 00:30:51,452 | INFO     | [monitor] control thread has ended
[2025-11-22 01:30:56] 2025-11-22 00:30:56,304 | INFO     | all workflow threads have been joined
[2025-11-22 01:30:56] 2025-11-22 00:30:56,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 01:30:56] 2025-11-22 00:30:56,305 | INFO     | traces error code: 0
[2025-11-22 01:30:56] 2025-11-22 00:30:56,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 01:30:56] 2025-11-22 00:30:56,351 [wrapper] ==== pilot stdout END ====
[2025-11-22 01:30:56] 2025-11-22 00:30:56,355 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 01:30:56] 2025-11-22 00:30:56,358 [wrapper] pilotpid: 73322
[2025-11-22 01:30:56] 2025-11-22 00:30:56,361 [wrapper] Pilot exit status: 0
[2025-11-22 01:30:56] 2025-11-22 00:30:56,368 [wrapper] pandaids: 6894245739
[2025-11-22 01:30:56] 2025-11-22 00:30:56,384 [wrapper] cleanup supervisor_pilot   73328 73323
[2025-11-22 01:30:56] 2025-11-22 00:30:56,387 [wrapper] Test setup, not cleaning
[2025-11-22 01:30:56] 2025-11-22 00:30:56,390 [wrapper] apfmon messages muted
[2025-11-22 01:30:56] 2025-11-22 00:30:56,392 [wrapper] ==== wrapper stdout END ====
[2025-11-22 01:30:56] 2025-11-22 00:30:56,395 [wrapper] ==== wrapper stderr END ====
[2025-11-22 01:30:56]  *** Error codes and diagnostics ***
[2025-11-22 01:30:56]     "exeErrorCode": 65,
[2025-11-22 01:30:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 01:30:56]     "pilotErrorCode": 1305,
[2025-11-22 01:30:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 01:30:56]  *** Listing of results directory ***
[2025-11-22 01:30:56] total 406444
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc    576529 Nov 21 02:08 pilot3.tar.gz
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc      5112 Nov 21 02:17 queuedata.json
[2025-11-22 01:30:56] -rwx------ 1 boinc boinc     36292 Nov 21 02:18 runpilot2-wrapper.sh
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc       100 Nov 22 01:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 01:30:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 01:26 run_atlas
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc       105 Nov 22 01:26 job.xml
[2025-11-22 01:30:56] -rw-r--r-- 2 boinc boinc 412009102 Nov 22 01:26 EVNT.47493127._002080.pool.root.1
[2025-11-22 01:30:56] drwxrwx--x 2 boinc boinc      4096 Nov 22 01:26 shared
[2025-11-22 01:30:56] -rw-r--r-- 2 boinc boinc    590100 Nov 22 01:26 input.tar.gz
[2025-11-22 01:30:56] -rw-r--r-- 2 boinc boinc     15847 Nov 22 01:26 start_atlas.sh
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc         0 Nov 22 01:26 boinc_setup_complete
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc      6194 Nov 22 01:26 init_data.xml
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc         0 Nov 22 01:26 boinc_lockfile
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc      2785 Nov 22 01:26 pandaJob.out
[2025-11-22 01:30:56] -rw------- 1 boinc boinc    989798 Nov 22 01:26 agis_schedconf.cvmfs.json
[2025-11-22 01:30:56] -rw------- 1 boinc boinc   1526164 Nov 22 01:26 agis_ddmendpoints.agis.ALL.json
[2025-11-22 01:30:56] drwx------ 5 boinc boinc      4096 Nov 22 01:26 pilot3
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc       523 Nov 22 01:27 boinc_task_state.xml
[2025-11-22 01:30:56] -rw------- 1 boinc boinc       964 Nov 22 01:27 memory_monitor_summary.json
[2025-11-22 01:30:56] -rw------- 1 boinc boinc     54337 Nov 22 01:28 log.47533967._000515.job.log.tgz.1
[2025-11-22 01:30:56] -rw------- 1 boinc boinc        95 Nov 22 01:29 pilot_heartbeat.json
[2025-11-22 01:30:56] -rw------- 1 boinc boinc      8404 Nov 22 01:30 heartbeat.json
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc      8192 Nov 22 01:30 boinc_mmap_file
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc        23 Nov 22 01:30 wrapper_checkpoint.txt
[2025-11-22 01:30:56] -rw------- 1 boinc boinc      4750 Nov 22 01:30 pilotlog.txt
[2025-11-22 01:30:56] -rw------- 1 boinc boinc     93658 Nov 22 01:30 log.47533967._000515.job.log.1
[2025-11-22 01:30:56] -rw------- 1 boinc boinc       186 Nov 22 01:30 output.list
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc       620 Nov 22 01:30 runtime_log
[2025-11-22 01:30:56] -rw------- 1 boinc boinc    163840 Nov 22 01:30 result.tar.gz
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc      8744 Nov 22 01:30 runtime_log.err
[2025-11-22 01:30:56] -rw------- 1 boinc boinc       649 Nov 22 01:30 MYXLDmUyUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmInIKDmezWfsn.diag
[2025-11-22 01:30:56] -rw-r--r-- 1 boinc boinc      8007 Nov 22 01:30 stderr.txt
[2025-11-22 01:30:56] No HITS result produced
[2025-11-22 01:30:56]  *** Contents of shared directory: ***
[2025-11-22 01:30:56] total 403116
[2025-11-22 01:30:56] -rw-r--r-- 2 boinc boinc 412009102 Nov 22 01:26 ATLAS.root_0
[2025-11-22 01:30:56] -rw-r--r-- 2 boinc boinc    590100 Nov 22 01:26 input.tar.gz
[2025-11-22 01:30:56] -rw-r--r-- 2 boinc boinc     15847 Nov 22 01:26 start_atlas.sh
[2025-11-22 01:30:56] -rw------- 1 boinc boinc    163840 Nov 22 01:30 result.tar.gz
01:30:58 (69594): run_atlas exited; CPU time 32.207109
01:30:58 (69594): called boinc_finish(0)

</stderr_txt>
]]>

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