Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:15:28 (3741144): wrapper (7.7.26015): starting
00:15:28 (3741144): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 00:15:28] Arguments: --nthreads 3
[2025-11-25 00:15:28] Threads: 3
[2025-11-25 00:15:28] Checking for CVMFS
[2025-11-25 00:15:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:15:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:15:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:15:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:15:28] 2.9.2.0 3609318 979 61648 153262 1 81 30360198 36864000 0 130560 0 359504 99.979 33031 9448 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 00:15:28] CVMFS is ok
[2025-11-25 00:15:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:15:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:15:28] Further information can be found at the LHC@home message board.
[2025-11-25 00:15:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:15:28] Checking for apptainer binary...
[2025-11-25 00:15:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:15:28] Running /usr/bin/apptainer --version
[2025-11-25 00:15:28] apptainer version 1.4.1-1.1
[2025-11-25 00:15:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:15:28] itA179
[2025-11-25 00:15:28] apptainer works
[2025-11-25 00:15:28] Set ATHENA_PROC_NUMBER=3
[2025-11-25 00:15:28] Set ATHENA_CORE_NUMBER=3
[2025-11-25 00:15:28] Starting ATLAS job with PandaID=6893848582
[2025-11-25 00:15:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:50:31 (3798418): wrapper (7.7.26015): starting
07:50:31 (3798418): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 07:50:31] Arguments: --nthreads 3
[2025-11-25 07:50:31] Threads: 3
[2025-11-25 07:50:31] This job has been restarted, cleaning up previous attempt
[2025-11-25 07:50:31] Checking for CVMFS
[2025-11-25 07:50:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:50:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:50:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:50:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:50:33] 2.9.2.0 3798544 0 30028 153273 3 1 30416519 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 07:50:33] CVMFS is ok
[2025-11-25 07:50:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:50:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:50:33] Further information can be found at the LHC@home message board.
[2025-11-25 07:50:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:50:33] Checking for apptainer binary...
[2025-11-25 07:50:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:50:33] Running /usr/bin/apptainer --version
[2025-11-25 07:50:33] apptainer version 1.4.1-1.1
[2025-11-25 07:50:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:50:33] itA179
[2025-11-25 07:50:33] apptainer works
[2025-11-25 07:50:33] Set ATHENA_PROC_NUMBER=3
[2025-11-25 07:50:33] Set ATHENA_CORE_NUMBER=3
[2025-11-25 07:50:33] Starting ATLAS job with PandaID=6893848582
[2025-11-25 07:50:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:56:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:56:20] 2025-11-25 14:55:29,782 | INFO     | number of running child processes to parent process 3809065: 1
[2025-11-25 15:56:20] 2025-11-25 14:55:29,782 | INFO     | maximum number of monitored processes: 9
[2025-11-25 15:56:20] 2025-11-25 14:55:30,886 | INFO     | time since job start (29089s) is within the limit (172800.0s)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,203 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 15:56:20] 2025-11-25 14:55:31,204 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3516.68025
[2025-11-25 15:56:20] 2025-11-25 14:55:31,205 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893848582/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,205 | INFO     | extracted standard info from prmon json
[2025-11-25 15:56:20] 2025-11-25 14:55:31,205 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:56:20] 2025-11-25 14:55:31,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:56:20] 2025-11-25 14:55:31,208 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:56:20] 2025-11-25 14:55:31,208 | INFO     | sum of square deviations: 33653609598.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,210 | INFO     | sum of deviations: 186516008828.99997
[2025-11-25 15:56:20] 2025-11-25 14:55:31,210 | INFO     | mean x: 1764067979.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,210 | INFO     | mean y: 2203165.6268343814
[2025-11-25 15:56:20] 2025-11-25 14:55:31,210 | INFO     | intersect: -9774665428.15616
[2025-11-25 15:56:20] 2025-11-25 14:55:31,211 | INFO     | chi2: 3.7779542058518203
[2025-11-25 15:56:20] 2025-11-25 14:55:31,211 | INFO     | sum of square deviations: 32606371358.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,213 | INFO     | sum of deviations: 256337487595.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,213 | INFO     | mean x: 1764067826.5
[2025-11-25 15:56:20] 2025-11-25 14:55:31,213 | INFO     | mean y: 2213303.529661017
[2025-11-25 15:56:20] 2025-11-25 14:55:31,213 | INFO     | intersect: -13866141124.116135
[2025-11-25 15:56:20] 2025-11-25 14:55:31,213 | INFO     | chi2: 2.3933572535857612
[2025-11-25 15:56:20] 2025-11-25 14:55:31,213 | INFO     | current chi2=2.3933572535857612 (change=36.64938421226501 %)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,213 | INFO     | sum of square deviations: 31581087018.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | sum of deviations: 251223734497.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | mean x: 1764067674.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | mean y: 2212542.875802998
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | intersect: -14030732830.889303
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | chi2: 2.393145192796252
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | current chi2=2.393145192796252 (change=0.008860390114831071 %)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | right removable region: 466
[2025-11-25 15:56:20] 2025-11-25 14:55:31,215 | INFO     | sum of square deviations: 32606371358.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,217 | INFO     | sum of deviations: 87217955305.99998
[2025-11-25 15:56:20] 2025-11-25 14:55:31,217 | INFO     | mean x: 1764068131.5
[2025-11-25 15:56:20] 2025-11-25 14:55:31,217 | INFO     | mean y: 2217603.7076271186
[2025-11-25 15:56:20] 2025-11-25 14:55:31,217 | INFO     | intersect: -4716443475.154085
[2025-11-25 15:56:20] 2025-11-25 14:55:31,217 | INFO     | chi2: 1.6993855207401936
[2025-11-25 15:56:20] 2025-11-25 14:55:31,217 | INFO     | current chi2=1.6993855207401936 (change=55.018366339434465 %)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,218 | INFO     | sum of square deviations: 31581087018.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,219 | INFO     | sum of deviations: 61875388307.999985
[2025-11-25 15:56:20] 2025-11-25 14:55:31,219 | INFO     | mean x: 1764068284.0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,219 | INFO     | mean y: 2221355.5310492506
[2025-11-25 15:56:20] 2025-11-25 14:55:31,219 | INFO     | intersect: -3454037449.370585
[2025-11-25 15:56:20] 2025-11-25 14:55:31,219 | INFO     | chi2: 1.4702356917311927
[2025-11-25 15:56:20] 2025-11-25 14:55:31,220 | INFO     | current chi2=1.4702356917311927 (change=13.484275710975288 %)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,220 | INFO     | left removable region: 20
[2025-11-25 15:56:20] 2025-11-25 14:55:31,220 | INFO     | sum of square deviations: 27509380907.5
[2025-11-25 15:56:20] 2025-11-25 14:55:31,221 | INFO     | sum of deviations: 111652336309.00003
[2025-11-25 15:56:20] 2025-11-25 14:55:31,221 | INFO     | mean x: 1764068253.5
[2025-11-25 15:56:20] 2025-11-25 14:55:31,221 | INFO     | mean y: 2233709.860986547
[2025-11-25 15:56:20] 2025-11-25 14:55:31,221 | INFO     | intersect: -7157590881.397394
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | chi2: 0.06944865154190855
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | current memory leak: 4.06 B/s (using 446 data points, chi2=0.07)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | could have reported an average CPU frequency of 3857 MHz (20 samples)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | ..............................
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . Timing measurements:
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . get job = 0 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . initial setup = 1 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . payload setup = 3 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . stage-in = 0 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . payload execution = 29062 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . stage-out = 0 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | . log creation = 0 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,222 | INFO     | ..............................
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | 
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | job summary report
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | --------------------------------------------------
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | PanDA job id: 6893848582
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | task id: 47523449
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | errors: (none)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | pilot state: finished 
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | transexitcode: 0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | exeerrorcode: 0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | exeerrordiag: 
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | exitcode: 0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | exitmsg: OK
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | cpuconsumptiontime: 85734 s
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | nevents: 1000
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | neventsw: 0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | pid: 3809065
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | pgrp: 3809065
[2025-11-25 15:56:20] 2025-11-25 14:55:31,252 | INFO     | corecount: 3
[2025-11-25 15:56:20] 2025-11-25 14:55:31,253 | INFO     | event service: False
[2025-11-25 15:56:20] 2025-11-25 14:55:31,253 | INFO     | sizes: {0: 2284313, 3: 2284575, 11: 2284603, 29069: 2323620, 29070: 2332625, 29073: 2332681, 29077: 2333055}
[2025-11-25 15:56:20] 2025-11-25 14:55:31,253 | INFO     | --------------------------------------------------
[2025-11-25 15:56:20] 2025-11-25 14:55:31,253 | INFO     | 
[2025-11-25 15:56:20] 2025-11-25 14:55:31,253 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-25 15:56:20] 2025-11-25 14:55:31,265 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,265 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,265 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,265 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,265 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | job 6893848582 has completed (purged errors)
[2025-11-25 15:56:20] 2025-11-25 14:55:31,266 | INFO     | overall cleanup function is called
[2025-11-25 15:56:20] 2025-11-25 14:55:32,274 | INFO     | --- collectZombieJob: --- 10, [3809065]
[2025-11-25 15:56:20] 2025-11-25 14:55:32,274 | INFO     | zombie collector waiting for pid 3809065
[2025-11-25 15:56:20] 2025-11-25 14:55:32,274 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:56:20] 2025-11-25 14:55:32,274 | INFO     | collected zombie processes
[2025-11-25 15:56:20] 2025-11-25 14:55:32,274 | INFO     | will attempt to kill all subprocesses of pid=3809065
[2025-11-25 15:56:20] 2025-11-25 14:55:32,315 | INFO     | process IDs to be killed: [3809065] (in reverse order)
[2025-11-25 15:56:20] 2025-11-25 14:55:32,339 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:56:20] 2025-11-25 14:55:32,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:56:20] 2025-11-25 14:55:32,341 | INFO     | did not find any defunct processes belonging to 3809065
[2025-11-25 15:56:20] 2025-11-25 14:55:32,342 | INFO     | did not find any defunct processes belonging to 3809065
[2025-11-25 15:56:20] 2025-11-25 14:55:32,342 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:56:20] 2025-11-25 14:55:32,342 | INFO     | ready for new job
[2025-11-25 15:56:20] 2025-11-25 14:55:32,342 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:56:20] 2025-11-25 14:55:32,343 | INFO     | ***************************************
[2025-11-25 15:56:20] 2025-11-25 14:55:32,343 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:56:20] 2025-11-25 14:55:32,343 | INFO     | ***************************************
[2025-11-25 15:56:20] 2025-11-25 14:55:32,343 | INFO     | 
[2025-11-25 15:56:20] 2025-11-25 14:55:32,344 | INFO     | architecture information:
[2025-11-25 15:56:20] 2025-11-25 14:55:32,344 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:56:20] 2025-11-25 14:55:32,352 | INFO     | cat /etc/os-release:
[2025-11-25 15:56:20] NAME="CentOS Linux"
[2025-11-25 15:56:20] VERSION="7 (Core)"
[2025-11-25 15:56:20] ID="centos"
[2025-11-25 15:56:20] ID_LIKE="rhel fedora"
[2025-11-25 15:56:20] VERSION_ID="7"
[2025-11-25 15:56:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:56:20] ANSI_COLOR="0;31"
[2025-11-25 15:56:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:56:20] HOME_URL="https://www.centos.org/"
[2025-11-25 15:56:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:56:20] 
[2025-11-25 15:56:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:56:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:56:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:56:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:56:20] 
[2025-11-25 15:56:20] 2025-11-25 14:55:32,352 | INFO     | ***************************************
[2025-11-25 15:56:20] 2025-11-25 14:55:32,855 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 15:56:20] 2025-11-25 14:55:32,867 | INFO     | sufficient remaining disk space (126149984256 B)
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | INFO     | update_server=False
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:56:20] 2025-11-25 14:55:32,868 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:56:20] 2025-11-25 14:55:33,133 | INFO     | all data control threads have been joined
[2025-11-25 15:56:20] 2025-11-25 14:55:33,266 | INFO     | all payload control threads have been joined
[2025-11-25 15:56:20] 2025-11-25 14:55:33,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:56:20] 2025-11-25 14:55:33,291 | INFO     | aborting loop
[2025-11-25 15:56:20] 2025-11-25 14:55:33,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:56:20] 2025-11-25 14:55:33,874 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:33,874 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,139 | INFO     | [data] control thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,261 | INFO     | all job control threads have been joined
[2025-11-25 15:56:20] 2025-11-25 14:55:34,271 | INFO     | [payload] control thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,296 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,524 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,596 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,779 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,874 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,975 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:34,978 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:35,003 | INFO     | [job] validate thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:35,259 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:35,266 | INFO     | [job] control thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:37,411 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:55:43,223 | INFO     | job.realtimelogging is not enabled
[2025-11-25 15:56:20] 2025-11-25 14:55:44,228 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:56:20] 2025-11-25 14:56:14,063 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:56:20] 2025-11-25 14:56:15,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686633256768)>', '<ExcThread(monitor, started 139686144104192)>']
[2025-11-25 15:56:20] 2025-11-25 14:56:15,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:56:20] 2025-11-25 14:56:15,082 | INFO     | [monitor] control thread has ended
[2025-11-25 15:56:20] 2025-11-25 14:56:20,094 | INFO     | all workflow threads have been joined
[2025-11-25 15:56:20] 2025-11-25 14:56:20,094 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:56:20] 2025-11-25 14:56:20,094 | INFO     | traces error code: 0
[2025-11-25 15:56:20] 2025-11-25 14:56:20,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:56:20] 2025-11-25 14:56:20,142 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:56:20] 2025-11-25 14:56:20,145 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:56:20] 2025-11-25 14:56:20,147 [wrapper] pilotpid: 3802615
[2025-11-25 15:56:20] 2025-11-25 14:56:20,150 [wrapper] Pilot exit status: 0
[2025-11-25 15:56:20] 2025-11-25 14:56:20,157 [wrapper] pandaids: 6893848582 6893848582
[2025-11-25 15:56:20] 2025-11-25 14:56:20,174 [wrapper] cleanup supervisor_pilot 3859731 3802616
[2025-11-25 15:56:20] 2025-11-25 14:56:20,176 [wrapper] Test setup, not cleaning
[2025-11-25 15:56:20] 2025-11-25 14:56:20,178 [wrapper] apfmon messages muted
[2025-11-25 15:56:20] 2025-11-25 14:56:20,181 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:56:20] 2025-11-25 14:56:20,183 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:56:20]  *** Error codes and diagnostics ***
[2025-11-25 15:56:20]     "exeErrorCode": 0,
[2025-11-25 15:56:20]     "exeErrorDiag": "",
[2025-11-25 15:56:20]     "pilotErrorCode": 0,
[2025-11-25 15:56:20]     "pilotErrorDiag": "",
[2025-11-25 15:56:20]  *** Listing of results directory ***
[2025-11-25 15:56:20] total 1709800
[2025-11-25 15:56:20] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:44 queuedata.json
[2025-11-25 15:56:20] -rwx------ 1 boinc boinc     36292 Nov 20 11:46 runpilot2-wrapper.sh
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc       100 Nov 25 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:56:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 00:15 run_atlas
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc       105 Nov 25 00:15 job.xml
[2025-11-25 15:56:20] -rw-r--r-- 3 boinc boinc 409464606 Nov 25 00:15 EVNT.47493127._000280.pool.root.1
[2025-11-25 15:56:20] -rw-r--r-- 3 boinc boinc 409464606 Nov 25 00:15 ATLAS.root_0
[2025-11-25 15:56:20] -rw-r--r-- 2 boinc boinc    590103 Nov 25 00:15 input.tar.gz
[2025-11-25 15:56:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:15 start_atlas.sh
[2025-11-25 15:56:20] drwxrwx--x 2 boinc boinc      4096 Nov 25 00:15 shared
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:15 boinc_setup_complete
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:15 boinc_lockfile
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc      6450 Nov 25 07:50 init_data.xml
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc      2786 Nov 25 07:50 pandaJob.out
[2025-11-25 15:56:20] -rw------- 1 boinc boinc    991801 Nov 25 07:50 agis_schedconf.cvmfs.json
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc       533 Nov 25 15:50 boinc_task_state.xml
[2025-11-25 15:56:20] -rw------- 1 boinc boinc 917430558 Nov 25 15:55 HITS.47523449._002798.pool.root.1
[2025-11-25 15:56:20] -rw------- 1 boinc boinc        96 Nov 25 15:55 pilot_heartbeat.json
[2025-11-25 15:56:20] -rw------- 1 boinc boinc      1038 Nov 25 15:55 memory_monitor_summary.json
[2025-11-25 15:56:20] -rw------- 1 boinc boinc   1516240 Nov 25 15:55 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:56:20] -rw------- 1 boinc boinc   1176199 Nov 25 15:55 log.47523449._002798.job.log.tgz.1
[2025-11-25 15:56:20] -rw------- 1 boinc boinc      8567 Nov 25 15:55 heartbeat.json
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc      8192 Nov 25 15:55 boinc_mmap_file
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc        29 Nov 25 15:55 wrapper_checkpoint.txt
[2025-11-25 15:56:20] -rw------- 1 boinc boinc      4628 Nov 25 15:56 pilotlog.txt
[2025-11-25 15:56:20] -rw------- 1 boinc boinc   4096627 Nov 25 15:56 log.47523449._002798.job.log.1
[2025-11-25 15:56:20] -rw------- 1 boinc boinc       353 Nov 25 15:56 output.list
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc       620 Nov 25 15:56 runtime_log
[2025-11-25 15:56:20] -rw------- 1 boinc boinc   5294080 Nov 25 15:56 result.tar.gz
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc      8983 Nov 25 15:56 runtime_log.err
[2025-11-25 15:56:20] -rw------- 1 boinc boinc       790 Nov 25 15:56 V1pKDmjMHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgXHKDmWCmhTm.diag
[2025-11-25 15:56:20] -rw-r--r-- 1 boinc boinc     23231 Nov 25 15:56 stderr.txt
[2025-11-25 15:56:20] HITS file was successfully produced:
[2025-11-25 15:56:20] -rw------- 1 boinc boinc 917430558 Nov 25 15:55 shared/HITS.pool.root.1
[2025-11-25 15:56:20]  *** Contents of shared directory: ***
[2025-11-25 15:56:20] total 1301576
[2025-11-25 15:56:20] -rw-r--r-- 3 boinc boinc 409464606 Nov 25 00:15 ATLAS.root_0
[2025-11-25 15:56:20] -rw-r--r-- 2 boinc boinc    590103 Nov 25 00:15 input.tar.gz
[2025-11-25 15:56:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:15 start_atlas.sh
[2025-11-25 15:56:20] -rw------- 1 boinc boinc 917430558 Nov 25 15:55 HITS.pool.root.1
[2025-11-25 15:56:20] -rw------- 1 boinc boinc   5294080 Nov 25 15:56 result.tar.gz
15:56:21 (3798418): run_atlas exited; CPU time 85761.903520
15:56:21 (3798418): called boinc_finish(0)

</stderr_txt>
]]>

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