Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:20:05 (20312): wrapper (7.7.26015): starting
18:20:05 (20312): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 18:20:05] Arguments: --nthreads 8
[2025-11-21 18:20:05] Threads: 8
[2025-11-21 18:20:05] Checking for CVMFS
[2025-11-21 18:20:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 18:20:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 18:20:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 18:20:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 18:20:06] 2.11.2.0 2804 33541 79008 153148 1 81 19903899 20275200 1 130560 0 3065572 99.234 2588444 28335 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 18:20:06] CVMFS is ok
[2025-11-21 18:20:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 18:20:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 18:20:06] Further information can be found at the LHC@home message board.
[2025-11-21 18:20:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:20:06] Checking for apptainer binary...
[2025-11-21 18:20:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 18:20:06] Running /usr/bin/apptainer --version
[2025-11-21 18:20:06] apptainer version 1.3.2-1.el7
[2025-11-21 18:20:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:20:08] c-204-3.aglt2.org
[2025-11-21 18:20:08] apptainer works
[2025-11-21 18:20:08] Set ATHENA_PROC_NUMBER=8
[2025-11-21 18:20:08] Set ATHENA_CORE_NUMBER=8
[2025-11-21 18:20:08] Starting ATLAS job with PandaID=6895323828
[2025-11-21 18:20:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:12:34 (9286): wrapper (7.7.26015): starting
00:12:34 (9286): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:12:34] Arguments: --nthreads 8
[2025-11-22 00:12:34] Threads: 8
[2025-11-22 00:12:34] This job has been restarted, cleaning up previous attempt
[2025-11-22 00:12:34] Checking for CVMFS
[2025-11-22 00:12:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:12:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:12:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:12:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:12:35] 2.11.2.0 2804 33894 78852 153160 1 1 10217568 20275200 1 130560 0 3210474 99.268 2606736 28378 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:12:35] CVMFS is ok
[2025-11-22 00:12:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:12:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:12:35] Further information can be found at the LHC@home message board.
[2025-11-22 00:12:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:12:35] Checking for apptainer binary...
[2025-11-22 00:12:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:12:35] Running /usr/bin/apptainer --version
[2025-11-22 00:12:35] apptainer version 1.3.2-1.el7
[2025-11-22 00:12:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:12:37] c-204-3.aglt2.org
[2025-11-22 00:12:37] apptainer works
[2025-11-22 00:12:37] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:12:37] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:12:37] Starting ATLAS job with PandaID=6895323828
[2025-11-22 00:12:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:35:17]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:35:17] 2025-11-22 17:34:16,368 | INFO     | time since job start (44479s) is within the limit (172800.0s)
[2025-11-22 12:35:17] 2025-11-22 17:34:18,070 | INFO     | monitor loop #3269: job 0:6895323828 is in state 'finished'
[2025-11-22 12:35:17] 2025-11-22 17:34:18,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 12:35:17] 2025-11-22 17:34:18,374 | INFO     | time since job start (44481s) is within the limit (172800.0s)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,011 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 12:35:17] 2025-11-22 17:34:20,015 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-22 12:35:17] 2025-11-22 17:34:20,017 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895323828/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,017 | INFO     | extracted standard info from prmon json
[2025-11-22 12:35:17] 2025-11-22 17:34:20,018 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:35:17] 2025-11-22 17:34:20,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:35:17] 2025-11-22 17:34:20,030 | INFO     | fitting pss+swap vs Time
[2025-11-22 12:35:17] 2025-11-22 17:34:20,031 | INFO     | sum of square deviations: 120132598990.57883
[2025-11-22 12:35:17] 2025-11-22 17:34:20,042 | INFO     | sum of deviations: 904393881153.637
[2025-11-22 12:35:17] 2025-11-22 17:34:20,042 | INFO     | mean x: 1763810614.6556928
[2025-11-22 12:35:17] 2025-11-22 17:34:20,043 | INFO     | mean y: 3142668.412894376
[2025-11-22 12:35:17] 2025-11-22 17:34:20,043 | INFO     | intersect: -13275347440.117455
[2025-11-22 12:35:17] 2025-11-22 17:34:20,044 | INFO     | chi2: 5.261840390702341
[2025-11-22 12:35:17] 2025-11-22 17:34:20,044 | INFO     | sum of square deviations: 117677796423.41502
[2025-11-22 12:35:17] 2025-11-22 17:34:20,065 | INFO     | sum of deviations: 1147498712527.6135
[2025-11-22 12:35:17] 2025-11-22 17:34:20,065 | INFO     | mean x: 1763810462.160221
[2025-11-22 12:35:17] 2025-11-22 17:34:20,066 | INFO     | mean y: 3157756.917127072
[2025-11-22 12:35:17] 2025-11-22 17:34:20,066 | INFO     | intersect: -17196095594.06479
[2025-11-22 12:35:17] 2025-11-22 17:34:20,067 | INFO     | chi2: 2.5435902673430775
[2025-11-22 12:35:17] 2025-11-22 17:34:20,067 | INFO     | current chi2=2.5435902673430775 (change=51.659684093846806 %)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,067 | INFO     | sum of square deviations: 115256580700.8732
[2025-11-22 12:35:17] 2025-11-22 17:34:20,078 | INFO     | sum of deviations: 1145674792953.2407
[2025-11-22 12:35:17] 2025-11-22 17:34:20,079 | INFO     | mean x: 1763810309.6620307
[2025-11-22 12:35:17] 2025-11-22 17:34:20,079 | INFO     | mean y: 3157637.9721835884
[2025-11-22 12:35:17] 2025-11-22 17:34:20,079 | INFO     | intersect: -17529489947.464375
[2025-11-22 12:35:17] 2025-11-22 17:34:20,080 | INFO     | chi2: 2.5161561468188416
[2025-11-22 12:35:17] 2025-11-22 17:34:20,080 | INFO     | current chi2=2.5161561468188416 (change=1.0785589517486383 %)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,080 | INFO     | right removable region: 718
[2025-11-22 12:35:17] 2025-11-22 17:34:20,081 | INFO     | sum of square deviations: 117677504843.41498
[2025-11-22 12:35:17] 2025-11-22 17:34:20,091 | INFO     | sum of deviations: 678480713936.5746
[2025-11-22 12:35:17] 2025-11-22 17:34:20,092 | INFO     | mean x: 1763810767.160221
[2025-11-22 12:35:17] 2025-11-22 17:34:20,092 | INFO     | mean y: 3156679.658839779
[2025-11-22 12:35:17] 2025-11-22 17:34:20,092 | INFO     | intersect: -10166260067.78378
[2025-11-22 12:35:17] 2025-11-22 17:34:20,093 | INFO     | chi2: 2.8887942972819154
[2025-11-22 12:35:17] 2025-11-22 17:34:20,093 | INFO     | current chi2=2.8887942972819154 (change=45.09916525810232 %)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,094 | INFO     | sum of square deviations: 115256218361.19577
[2025-11-22 12:35:17] 2025-11-22 17:34:20,104 | INFO     | sum of deviations: 628377523140.575
[2025-11-22 12:35:17] 2025-11-22 17:34:20,105 | INFO     | mean x: 1763810919.6606398
[2025-11-22 12:35:17] 2025-11-22 17:34:20,105 | INFO     | mean y: 3159834.055632823
[2025-11-22 12:35:17] 2025-11-22 17:34:20,105 | INFO     | intersect: -9613146797.759089
[2025-11-22 12:35:17] 2025-11-22 17:34:20,106 | INFO     | chi2: 2.8362049819050172
[2025-11-22 12:35:17] 2025-11-22 17:34:20,106 | INFO     | current chi2=2.8362049819050172 (change=1.8204589861721816 %)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,106 | INFO     | left removable region: 20
[2025-11-22 12:35:17] 2025-11-22 17:34:20,107 | INFO     | sum of square deviations: 105449470364.05136
[2025-11-22 12:35:17] 2025-11-22 17:34:20,117 | INFO     | sum of deviations: 807368406652.4789
[2025-11-22 12:35:17] 2025-11-22 17:34:20,117 | INFO     | mean x: 1763810889.1690545
[2025-11-22 12:35:17] 2025-11-22 17:34:20,117 | INFO     | mean y: 3179059.5128939827
[2025-11-22 12:35:17] 2025-11-22 17:34:20,117 | INFO     | intersect: -13501347632.829613
[2025-11-22 12:35:17] 2025-11-22 17:34:20,118 | INFO     | chi2: 0.05097951291621867
[2025-11-22 12:35:17] 2025-11-22 17:34:20,118 | INFO     | current memory leak: 7.66 B/s (using 698 data points, chi2=0.05)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | could have reported an average CPU frequency of 2176 MHz (28 samples)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | ..............................
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | . Timing measurements:
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | . get job = 0 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | . initial setup = 2 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | . payload setup = 9 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | . stage-in = 0 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,119 | INFO     | . payload execution = 44440 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,120 | INFO     | . stage-out = 3 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,120 | INFO     | . log creation = 0 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,120 | INFO     | ..............................
[2025-11-22 12:35:17] 2025-11-22 17:34:20,209 | INFO     | 
[2025-11-22 12:35:17] 2025-11-22 17:34:20,209 | INFO     | job summary report
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | --------------------------------------------------
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | PanDA job id: 6895323828
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | task id: 47556137
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | errors: (none)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | pilot state: finished 
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | transexitcode: 0
[2025-11-22 12:35:17] 2025-11-22 17:34:20,210 | INFO     | exeerrorcode: 0
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | exeerrordiag: 
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | exitcode: 0
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | exitmsg: OK
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | cpuconsumptiontime: 346002 s
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | nevents: 1000
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | neventsw: 0
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | pid: 19859
[2025-11-22 12:35:17] 2025-11-22 17:34:20,211 | INFO     | pgrp: 19859
[2025-11-22 12:35:17] 2025-11-22 17:34:20,212 | INFO     | corecount: 8
[2025-11-22 12:35:17] 2025-11-22 17:34:20,212 | INFO     | event service: False
[2025-11-22 12:35:17] 2025-11-22 17:34:20,212 | INFO     | sizes: {0: 2297975, 1: 2298831, 7: 2299093, 12: 2299121, 44454: 2344904, 44459: 2354082, 44465: 2354272}
[2025-11-22 12:35:17] 2025-11-22 17:34:20,212 | INFO     | --------------------------------------------------
[2025-11-22 12:35:17] 2025-11-22 17:34:20,212 | INFO     | 
[2025-11-22 12:35:17] 2025-11-22 17:34:20,212 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 12:35:17] 2025-11-22 17:34:20,244 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,245 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,245 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,245 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,246 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 12:35:17] 2025-11-22 17:34:20,249 | INFO     | job 6895323828 has completed (purged errors)
[2025-11-22 12:35:17] 2025-11-22 17:34:20,249 | INFO     | overall cleanup function is called
[2025-11-22 12:35:17] 2025-11-22 17:34:21,265 | INFO     | --- collectZombieJob: --- 10, [19859]
[2025-11-22 12:35:17] 2025-11-22 17:34:21,265 | INFO     | zombie collector waiting for pid 19859
[2025-11-22 12:35:17] 2025-11-22 17:34:21,266 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 12:35:17] 2025-11-22 17:34:21,266 | INFO     | collected zombie processes
[2025-11-22 12:35:17] 2025-11-22 17:34:21,266 | INFO     | will attempt to kill all subprocesses of pid=19859
[2025-11-22 12:35:17] 2025-11-22 17:34:21,362 | INFO     | process IDs to be killed: [19859] (in reverse order)
[2025-11-22 12:35:17] 2025-11-22 17:34:21,425 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 12:35:17] 2025-11-22 17:34:21,426 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 12:35:17] 2025-11-22 17:34:21,432 | INFO     | did not find any defunct processes belonging to 19859
[2025-11-22 12:35:17] 2025-11-22 17:34:21,435 | INFO     | did not find any defunct processes belonging to 19859
[2025-11-22 12:35:17] 2025-11-22 17:34:21,438 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 12:35:17] 2025-11-22 17:34:21,438 | INFO     | ready for new job
[2025-11-22 12:35:17] 2025-11-22 17:34:21,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 12:35:17] 2025-11-22 17:34:21,442 | INFO     | ***************************************
[2025-11-22 12:35:17] 2025-11-22 17:34:21,442 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 12:35:17] 2025-11-22 17:34:21,442 | INFO     | ***************************************
[2025-11-22 12:35:17] 2025-11-22 17:34:21,442 | INFO     | 
[2025-11-22 12:35:17] 2025-11-22 17:34:21,443 | INFO     | architecture information:
[2025-11-22 12:35:17] 2025-11-22 17:34:21,444 | INFO     | executing command: cat /etc/os-release
[2025-11-22 12:35:17] 2025-11-22 17:34:21,464 | INFO     | cat /etc/os-release:
[2025-11-22 12:35:17] NAME="CentOS Linux"
[2025-11-22 12:35:17] VERSION="7 (Core)"
[2025-11-22 12:35:17] ID="centos"
[2025-11-22 12:35:17] ID_LIKE="rhel fedora"
[2025-11-22 12:35:17] VERSION_ID="7"
[2025-11-22 12:35:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 12:35:17] ANSI_COLOR="0;31"
[2025-11-22 12:35:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 12:35:17] HOME_URL="https://www.centos.org/"
[2025-11-22 12:35:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 12:35:17] 
[2025-11-22 12:35:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 12:35:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 12:35:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 12:35:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 12:35:17] 
[2025-11-22 12:35:17] 2025-11-22 17:34:21,464 | INFO     | ***************************************
[2025-11-22 12:35:17] 2025-11-22 17:34:21,968 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 12:35:17] 2025-11-22 17:34:21,990 | INFO     | sufficient remaining disk space (17040408576 B)
[2025-11-22 12:35:17] 2025-11-22 17:34:21,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 12:35:17] 2025-11-22 17:34:21,991 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 12:35:17] 2025-11-22 17:34:21,992 | INFO     | update_server=False
[2025-11-22 12:35:17] 2025-11-22 17:34:21,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 12:35:17] 2025-11-22 17:34:21,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:35:17] 2025-11-22 17:34:21,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 12:35:17] 2025-11-22 17:34:21,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:35:17] 2025-11-22 17:34:21,993 | INFO     | aborting loop
[2025-11-22 12:35:17] 2025-11-22 17:34:22,205 | INFO     | all data control threads have been joined
[2025-11-22 12:35:17] 2025-11-22 17:34:22,893 | INFO     | all payload control threads have been joined
[2025-11-22 12:35:17] 2025-11-22 17:34:22,997 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:22,997 | INFO     | [job] retrieve thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:22,999 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,211 | INFO     | [data] control thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,260 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,276 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,277 | INFO     | [job] validate thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,348 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,517 | INFO     | all job control threads have been joined
[2025-11-22 12:35:17] 2025-11-22 17:34:23,892 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,899 | INFO     | [payload] control thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:23,994 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:24,085 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:24,362 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:24,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 12:35:17] 2025-11-22 17:34:24,508 | INFO     | [payload] validate_post thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:24,523 | INFO     | [job] control thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:28,390 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:35:17] 2025-11-22 17:34:51,595 | INFO     | PID=13363 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 12:35:17] 2025-11-22 17:34:51,596 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:35:17] 2025-11-22 17:34:51,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:35:17] 2025-11-22 17:34:51,596 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:35:17] 2025-11-22 17:35:10,422 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:35:17] 2025-11-22 17:35:12,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148927936320)>', '<ExcThread(monitor, started 140148087953152)>']
[2025-11-22 12:35:17] 2025-11-22 17:35:12,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:35:17] 2025-11-22 17:35:12,701 | INFO     | [monitor] control thread has ended
[2025-11-22 12:35:17] 2025-11-22 17:35:17,056 | INFO     | all workflow threads have been joined
[2025-11-22 12:35:17] 2025-11-22 17:35:17,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:35:17] 2025-11-22 17:35:17,057 | INFO     | traces error code: 0
[2025-11-22 12:35:17] 2025-11-22 17:35:17,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:35:17] 2025-11-22 17:35:17,164 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:35:17] 2025-11-22 17:35:17,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:35:17] 2025-11-22 17:35:17,174 [wrapper] pilotpid: 13363
[2025-11-22 12:35:17] 2025-11-22 17:35:17,180 [wrapper] Pilot exit status: 0
[2025-11-22 12:35:17] 2025-11-22 17:35:17,199 [wrapper] pandaids: 6895323828 6895323828
[2025-11-22 12:35:17] 2025-11-22 17:35:17,257 [wrapper] cleanup supervisor_pilot  4862 13364
[2025-11-22 12:35:17] 2025-11-22 17:35:17,263 [wrapper] Test setup, not cleaning
[2025-11-22 12:35:17] 2025-11-22 17:35:17,268 [wrapper] apfmon messages muted
[2025-11-22 12:35:17] 2025-11-22 17:35:17,273 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:35:17] 2025-11-22 17:35:17,278 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:35:17]  *** Error codes and diagnostics ***
[2025-11-22 12:35:17]     "exeErrorCode": 0,
[2025-11-22 12:35:17]     "exeErrorDiag": "",
[2025-11-22 12:35:17]     "pilotErrorCode": 0,
[2025-11-22 12:35:17]     "pilotErrorDiag": "",
[2025-11-22 12:35:17]  *** Listing of results directory ***
[2025-11-22 12:35:17] total 1735228
[2025-11-22 12:35:17] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 08:51 pilot3.tar.gz
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 09:05 queuedata.json
[2025-11-22 12:35:17] -rwx------ 1 boincer umatlas     36292 Nov 21 09:07 runpilot2-wrapper.sh
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas       100 Nov 21 18:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:35:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 18:20 run_atlas
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas       105 Nov 21 18:20 job.xml
[2025-11-22 12:35:17] -rw-r--r-- 3 boincer umatlas 413063512 Nov 21 18:20 EVNT.47483658._000014.pool.root.1
[2025-11-22 12:35:17] -rw-r--r-- 3 boincer umatlas 413063512 Nov 21 18:20 ATLAS.root_0
[2025-11-22 12:35:17] drwxrwx--x 2 boincer umatlas      4096 Nov 21 18:20 shared
[2025-11-22 12:35:17] -rw-r--r-- 2 boincer umatlas    590102 Nov 21 18:20 input.tar.gz
[2025-11-22 12:35:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:20 start_atlas.sh
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas         0 Nov 21 18:20 boinc_lockfile
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 00:12 pandaJob.out
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas        57 Nov 22 00:12 setup.sh.local
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas    989752 Nov 22 00:12 agis_schedconf.cvmfs.json
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas       533 Nov 22 12:27 boinc_task_state.xml
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas      5910 Nov 22 12:29 init_data.xml
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas 930606396 Nov 22 12:33 HITS.47556137._000137.pool.root.1
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas        96 Nov 22 12:34 pilot_heartbeat.json
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas      1062 Nov 22 12:34 memory_monitor_summary.json
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas   1526164 Nov 22 12:34 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas   1979860 Nov 22 12:34 log.47556137._000137.job.log.tgz.1
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas      8652 Nov 22 12:34 heartbeat.json
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas        29 Nov 22 12:35 wrapper_checkpoint.txt
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas      4746 Nov 22 12:35 pilotlog.txt
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 12:35 boinc_mmap_file
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas   6126596 Nov 22 12:35 log.47556137._000137.job.log.1
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas       353 Nov 22 12:35 output.list
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas       620 Nov 22 12:35 runtime_log
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas   8130560 Nov 22 12:35 result.tar.gz
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas      9423 Nov 22 12:35 runtime_log.err
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas       792 Nov 22 12:35 EoSKDmGygg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlSJKDmsKdEVo.diag
[2025-11-22 12:35:17] -rw-r--r-- 1 boincer umatlas     23446 Nov 22 12:35 stderr.txt
[2025-11-22 12:35:17] HITS file was successfully produced:
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas 930606396 Nov 22 12:33 shared/HITS.pool.root.1
[2025-11-22 12:35:17]  *** Contents of shared directory: ***
[2025-11-22 12:35:17] total 1320720
[2025-11-22 12:35:17] -rw-r--r-- 3 boincer umatlas 413063512 Nov 21 18:20 ATLAS.root_0
[2025-11-22 12:35:17] -rw-r--r-- 2 boincer umatlas    590102 Nov 21 18:20 input.tar.gz
[2025-11-22 12:35:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:20 start_atlas.sh
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas 930606396 Nov 22 12:33 HITS.pool.root.1
[2025-11-22 12:35:17] -rw------- 1 boincer umatlas   8130560 Nov 22 12:35 result.tar.gz
12:35:18 (9286): run_atlas exited; CPU time 343493.902053
12:35:18 (9286): called boinc_finish(0)

</stderr_txt>
]]>

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