Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:23:31 (3971510): wrapper (7.7.26015): starting
00:23:31 (3971510): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 00:23:31] Arguments: --nthreads 3
[2025-11-22 00:23:31] Threads: 3
[2025-11-22 00:23:31] Checking for CVMFS
[2025-11-22 00:23:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:23:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:23:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:23:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:23:34] 2.9.2.0 3971706 0 30072 153149 3 1 34576293 36864001 0 130560 0 0 0.000 1291 1253 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 00:23:34] CVMFS is ok
[2025-11-22 00:23:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:23:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:23:34] Further information can be found at the LHC@home message board.
[2025-11-22 00:23:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:23:34] Checking for apptainer binary...
[2025-11-22 00:23:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:23:34] Running /usr/bin/apptainer --version
[2025-11-22 00:23:34] apptainer version 1.4.1-1.1
[2025-11-22 00:23:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:23:34] thA335
[2025-11-22 00:23:34] apptainer works
[2025-11-22 00:23:34] Set ATHENA_PROC_NUMBER=3
[2025-11-22 00:23:34] Set ATHENA_CORE_NUMBER=3
[2025-11-22 00:23:34] Starting ATLAS job with PandaID=6895323829
[2025-11-22 00:23:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:27:54]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | INFO     | sufficient remaining disk space (827866480640 B)
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | INFO     | update_server=False
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:27:54] 2025-11-21 23:27:06,844 | INFO     | aborting loop
[2025-11-22 00:27:54] 2025-11-21 23:27:07,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:27:54] 2025-11-21 23:27:07,701 | INFO     | all job control threads have been joined
[2025-11-22 00:27:54] 2025-11-21 23:27:07,805 | INFO     | all data control threads have been joined
[2025-11-22 00:27:54] 2025-11-21 23:27:07,846 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:07,849 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:07,850 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:08,248 | INFO     | all payload control threads have been joined
[2025-11-22 00:27:54] 2025-11-21 23:27:08,327 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:08,366 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:08,707 | INFO     | [job] control thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:08,811 | INFO     | [data] control thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:08,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,004 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,121 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,196 | INFO     | [job] validate thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,254 | INFO     | [payload] control thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,270 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,333 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,565 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:09,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:27:54] 2025-11-21 23:27:13,878 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:27:54] 2025-11-21 23:27:36,906 | INFO     | PID=3975784 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:27:54] 2025-11-21 23:27:36,907 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:27:54] 2025-11-21 23:27:36,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:27:54] 2025-11-21 23:27:36,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:27:54] 2025-11-21 23:27:48,018 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:27:54] 2025-11-21 23:27:49,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220203738944)>', '<ExcThread(monitor, started 140219709896448)>']
[2025-11-22 00:27:54] 2025-11-21 23:27:49,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:27:54] 2025-11-21 23:27:49,976 | INFO     | [monitor] control thread has ended
[2025-11-22 00:27:54] 2025-11-21 23:27:54,751 | INFO     | all workflow threads have been joined
[2025-11-22 00:27:54] 2025-11-21 23:27:54,752 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:27:54] 2025-11-21 23:27:54,752 | INFO     | traces error code: 0
[2025-11-22 00:27:54] 2025-11-21 23:27:54,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:27:54] 2025-11-21 23:27:54,814 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:27:54] 2025-11-21 23:27:54,817 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:27:54] 2025-11-21 23:27:54,820 [wrapper] pilotpid: 3975784
[2025-11-22 00:27:54] 2025-11-21 23:27:54,822 [wrapper] Pilot exit status: 0
[2025-11-22 00:27:54] 2025-11-21 23:27:54,830 [wrapper] pandaids: 6895323829
[2025-11-22 00:27:54] 2025-11-21 23:27:54,850 [wrapper] cleanup supervisor_pilot 3975790 3975785
[2025-11-22 00:27:54] 2025-11-21 23:27:54,853 [wrapper] Test setup, not cleaning
[2025-11-22 00:27:54] 2025-11-21 23:27:54,855 [wrapper] apfmon messages muted
[2025-11-22 00:27:54] 2025-11-21 23:27:54,858 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:27:54] 2025-11-21 23:27:54,861 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:27:54]  *** Error codes and diagnostics ***
[2025-11-22 00:27:54]     "exeErrorCode": 65,
[2025-11-22 00:27:54]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 00:27:54]     "pilotErrorCode": 1305,
[2025-11-22 00:27:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 00:27:54]  *** Listing of results directory ***
[2025-11-22 00:27:54] total 407488
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:05 queuedata.json
[2025-11-22 00:27:54] -rwx------ 1 boinc boinc     36292 Nov 21 15:07 runpilot2-wrapper.sh
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc       100 Nov 22 00:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:27:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 00:23 run_atlas
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc       105 Nov 22 00:23 job.xml
[2025-11-22 00:27:54] -rw-r--r-- 2 boinc boinc 413063512 Nov 22 00:23 EVNT.47483658._000014.pool.root.1
[2025-11-22 00:27:54] -rw-r--r-- 2 boinc boinc    590102 Nov 22 00:23 input.tar.gz
[2025-11-22 00:27:54] -rw-r--r-- 2 boinc boinc     15847 Nov 22 00:23 start_atlas.sh
[2025-11-22 00:27:54] drwxrwx--x 2 boinc boinc      4096 Nov 22 00:23 shared
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc         0 Nov 22 00:23 boinc_setup_complete
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc      6194 Nov 22 00:23 init_data.xml
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc         0 Nov 22 00:23 boinc_lockfile
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc      2784 Nov 22 00:23 pandaJob.out
[2025-11-22 00:27:54] -rw------- 1 boinc boinc    989798 Nov 22 00:23 agis_schedconf.cvmfs.json
[2025-11-22 00:27:54] -rw------- 1 boinc boinc   1526164 Nov 22 00:23 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:27:54] drwx------ 5 boinc boinc      4096 Nov 22 00:23 pilot3
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc       522 Nov 22 00:24 boinc_task_state.xml
[2025-11-22 00:27:54] -rw------- 1 boinc boinc       955 Nov 22 00:24 memory_monitor_summary.json
[2025-11-22 00:27:54] -rw------- 1 boinc boinc     55876 Nov 22 00:24 log.47556137._000138.job.log.tgz.1
[2025-11-22 00:27:54] -rw------- 1 boinc boinc        95 Nov 22 00:26 pilot_heartbeat.json
[2025-11-22 00:27:54] -rw------- 1 boinc boinc      8408 Nov 22 00:27 heartbeat.json
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc      8192 Nov 22 00:27 boinc_mmap_file
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc        22 Nov 22 00:27 wrapper_checkpoint.txt
[2025-11-22 00:27:54] -rw------- 1 boinc boinc      4752 Nov 22 00:27 pilotlog.txt
[2025-11-22 00:27:54] -rw------- 1 boinc boinc     93607 Nov 22 00:27 log.47556137._000138.job.log.1
[2025-11-22 00:27:54] -rw------- 1 boinc boinc       186 Nov 22 00:27 output.list
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc       620 Nov 22 00:27 runtime_log
[2025-11-22 00:27:54] -rw------- 1 boinc boinc    174080 Nov 22 00:27 result.tar.gz
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc      8744 Nov 22 00:27 runtime_log.err
[2025-11-22 00:27:54] -rw------- 1 boinc boinc       648 Nov 22 00:27 IHUKDmGygg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmSJKDmwP8ZYo.diag
[2025-11-22 00:27:54] -rw-r--r-- 1 boinc boinc      8115 Nov 22 00:27 stderr.txt
[2025-11-22 00:27:54] No HITS result produced
[2025-11-22 00:27:54]  *** Contents of shared directory: ***
[2025-11-22 00:27:54] total 404156
[2025-11-22 00:27:54] -rw-r--r-- 2 boinc boinc 413063512 Nov 22 00:23 ATLAS.root_0
[2025-11-22 00:27:54] -rw-r--r-- 2 boinc boinc    590102 Nov 22 00:23 input.tar.gz
[2025-11-22 00:27:54] -rw-r--r-- 2 boinc boinc     15847 Nov 22 00:23 start_atlas.sh
[2025-11-22 00:27:54] -rw------- 1 boinc boinc    174080 Nov 22 00:27 result.tar.gz
00:27:56 (3971510): run_atlas exited; CPU time 31.568822
00:27:56 (3971510): called boinc_finish(0)

</stderr_txt>
]]>

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